View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6963_low_5 (Length: 242)
Name: NF6963_low_5
Description: NF6963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6963_low_5 |
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| [»] chr8 (1 HSPs) |
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| [»] chr7 (4 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 56 - 242
Target Start/End: Complemental strand, 14541269 - 14541083
Alignment:
| Q |
56 |
cgaccccattagtttgcctcatattaaactcaatacgagagttttcaaaattactttgaaacacttgtctacaaacatctataatacatctaaatttact |
155 |
Q |
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| T |
14541269 |
cgaccacattagtttgcctcatattaaactcaatacgagagtttttaaaattactttgaaacacttgtctacaaacatctataatacatctaaatttact |
14541170 |
T |
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| Q |
156 |
attatcttctacatatgttctaaaagcatccacaatcttctaagagtctagagaaaaatatacattatcaaattgaaggtatgatgt |
242 |
Q |
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| T |
14541169 |
attatcttctacatatgttctaaaagcatccacaatcttctaagagtctagagaaaaatatacattatcaaattgaaggtatgatgt |
14541083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 77 - 242
Target Start/End: Complemental strand, 712314 - 712149
Alignment:
| Q |
77 |
tattaaactcaatacgagagttttcaaaattactttgaaacacttgtctacaaacatctataatacatctaaatttactattatcttctacatatgttct |
176 |
Q |
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| T |
712314 |
tattaaactcaacatgagagttttaaaatctattttgaaacaactatctacatgcaagtataatacatccaaattcacaactatcttctacacatgttct |
712215 |
T |
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| Q |
177 |
aaaagcatccacaatcttctaagagtctagagaaaaatatacattatcaaattgaaggtatgatgt |
242 |
Q |
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| T |
712214 |
aaaagcatccacaaccttcttagagtctagagcaaaatctacattatcaaattgaaggtatgatgt |
712149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 60 - 242
Target Start/End: Complemental strand, 717541 - 717359
Alignment:
| Q |
60 |
cccattagtttgcctcatattaaactcaatacgagagttttcaaaattactttgaaacacttgtctacaaacatctataatacatctaaatttactatta |
159 |
Q |
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| T |
717541 |
cccattagcttgtctcctattaaactcaacatgagagttttgaaatctactttggaataattgtctacattcaactataatacatccaaattcactacta |
717442 |
T |
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| Q |
160 |
tcttctacatatgttctaaaagcatccacaatcttctaagagtctagagaaaaatatacattatcaaattgaaggtatgatgt |
242 |
Q |
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| T |
717441 |
tctcctacacatcttctaaaagcatcaacaaccttcttagagtctagagctaaatctacattatcaaattgaaggtgtgatgt |
717359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 121 - 242
Target Start/End: Original strand, 36724254 - 36724375
Alignment:
| Q |
121 |
tgtctacaaacatctataatacatctaaatttactattatcttctacatatgttctaaaagcatccacaatcttctaagagtctagagaaaaatatacat |
220 |
Q |
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||||||||| |||||||||| |||||||||| |||| |||||| || |||||||| |||||||||| |||| ||||||||||||||||| | || |
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| T |
36724254 |
tgtctacaagcatctataatgcatctaaattcactactatcttatatgcttgttctaagagcatccacatccttcacagagtctagagaaaaatctgtat |
36724353 |
T |
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| Q |
221 |
tatcaaattgaaggtatgatgt |
242 |
Q |
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| T |
36724354 |
tatcaaattgaaggtctgatgt |
36724375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 42029828 - 42029917
Alignment:
| Q |
11 |
atcatcataaaaagttatatgggactagctgtatcaattcacgagcgaccccattagtttgcctcatattaaactcaatacgagagtttt |
100 |
Q |
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| T |
42029828 |
atcatcatcaaacattatataggactaaccgtatcaattcacgagcgaccccattaatttgcctcatattaaattcaacatgagagtttt |
42029917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 167
Target Start/End: Original strand, 2087389 - 2087499
Alignment:
| Q |
57 |
gaccccattagtttgcctcatattaaactcaatacgagagttttcaaaattactttgaaacacttgtctacaaacatctataatacatctaaatttacta |
156 |
Q |
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||||||||||||||||||| ||||||| | || | ||||||||| ||| |||||||||||| |||| ||| |||||||||||||| ||||| | | || |
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| T |
2087389 |
gaccccattagtttgcctcgtattaaatttaacatgagagttttgaaatctactttgaaacaagtgtcaacagacatctataatacaactaaactcaata |
2087488 |
T |
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| Q |
157 |
ttatcttctac |
167 |
Q |
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| T |
2087489 |
ctatcttctac |
2087499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 51080720 - 51080779
Alignment:
| Q |
46 |
aattcacgagcgaccccattagtttgcctcatattaaactcaatacgagagttttcaaaa |
105 |
Q |
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| T |
51080720 |
aattcatgagcgaccccattagattgcctcctattaaactcgacatgagagttttgaaaa |
51080779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 8267269 - 8267200
Alignment:
| Q |
173 |
ttctaaaagcatccacaatcttctaagagtctagagaaaaatatacattatcaaattgaaggtatgatgt |
242 |
Q |
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|||||||||||||||||| ||||| |||||||| | ||||| | |||||||| |||||||| |||||| |
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| T |
8267269 |
ttctaaaagcatccacaaccttcttagagtctaaaacaaaatccatattatcaagttgaaggtttgatgt |
8267200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 38998963 - 38998911
Alignment:
| Q |
53 |
gagcgaccccattagtttgcctcatattaaactcaatacgagagttttcaaaa |
105 |
Q |
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| T |
38998963 |
gagcgaccccattagcttgcctcctattaaactcgacatgagagttttgaaaa |
38998911 |
T |
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