View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6965_high_1 (Length: 606)
Name: NF6965_high_1
Description: NF6965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6965_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 36 - 317
Target Start/End: Complemental strand, 3730979 - 3730696
Alignment:
| Q |
36 |
gatgaatatgttactacttacaattaggtctatttgtgatgttctgcgtttaatgaaactcttagatctaattgttcaatttttcagtaacttgccaaca |
135 |
Q |
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| T |
3730979 |
gatgaatatgttactacttacaattaggtctatttgtgatgttctgcgtttaatgaaactcttagatctaattgttcaatttttcagtaacttgccaaca |
3730880 |
T |
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| Q |
136 |
tttttgggtggtaattgcacatgttctgaatatggaggttgcttgatgagtgatgaaggcccctggaaaaattcagaattgttagaaatgattcaggttt |
235 |
Q |
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| T |
3730879 |
tttttgggtggtaattgcacatgttctgaatatggaggttgcttgatgagtgatcaaggcccctggaaaaattcagaattgttagaaatgattcaggttt |
3730780 |
T |
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| Q |
236 |
gtcaatatcaaga--gacattttaaactctttcaacaaaactagctttttgtatttttaattgtcttgtagaaacatgaaaatg |
317 |
Q |
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| T |
3730779 |
gtcaatatcaagaacgacattttaaactctttcaacaaaactagctttttgtatttttaattgtcttgtagaaacatgaaaatg |
3730696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 357 - 596
Target Start/End: Complemental strand, 3730696 - 3730457
Alignment:
| Q |
357 |
gtgcacataattgagagtttcataaattagagccattcaactaccatgttttcggccaagaacaaatttggttgattaaacacaaattcgttagctattt |
456 |
Q |
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| T |
3730696 |
gtgcacataattgagagtttcataaattagagccattcaactaccatgttttcggccaagaacaaatttggttgattaaacacaaattcgttagctattt |
3730597 |
T |
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| Q |
457 |
gtgaacaaacctttcatgattagtagcttttccggtagaaataaccgacaaggatgtaaaattattcatgcagacaacggaagagatggatggtgcgtgc |
556 |
Q |
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| T |
3730596 |
gtgaacaaacctttcatgattagtagcttttccggtagaaataaccgacaagtatgtaaaattattcatgcagacaacggaagagatggatggtgcgtgc |
3730497 |
T |
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| Q |
557 |
gaacacaacaatgtgatttcagaaggatcattgatgtcca |
596 |
Q |
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| T |
3730496 |
gaacacaacaatgtggtttcagaaggatcattgatgtcca |
3730457 |
T |
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