View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6965_high_13 (Length: 300)
Name: NF6965_high_13
Description: NF6965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6965_high_13 |
 | |
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| [»] chr3 (28 HSPs) |
| |
|
| [»] scaffold0083 (1 HSPs) |
| |
|
| [»] scaffold0002 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 28)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 300
Target Start/End: Original strand, 9838362 - 9838644
Alignment:
| Q |
18 |
acaagcaaccatgctcaatcttcaggctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9838362 |
acaagcaaccatgctcaatcttcaggctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagat |
9838461 |
T |
|
| Q |
118 |
gttgtctttgatgctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaactaatcaggtgt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9838462 |
gttgtctttgatgctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaactaatcaggtgt |
9838561 |
T |
|
| Q |
218 |
ggaacttcctttcttctccttttaatagtttttacaaagagatcaattcccagatgaagatcatgtgtgatagcttgcaactt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9838562 |
ggaacttcctttcttctccttttaatagtttttacaaagagatcaattcccagatgaagatcatgtgtgatagcttgcaactt |
9838644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 300
Target Start/End: Original strand, 9849240 - 9849522
Alignment:
| Q |
18 |
acaagcaaccatgctcaatcttcaggctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9849240 |
acaagcaaccatgctcaatcttcaggctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagat |
9849339 |
T |
|
| Q |
118 |
gttgtctttgatgctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaactaatcaggtgt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9849340 |
gttgtctttgatgctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaactaatcaggtgt |
9849439 |
T |
|
| Q |
218 |
ggaacttcctttcttctccttttaatagtttttacaaagagatcaattcccagatgaagatcatgtgtgatagcttgcaactt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9849440 |
ggaacttcctttcttctccttttaatagtttttacaaagagatcaattcccagatgaagatcatgtgtgatagcttgcaactt |
9849522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 297
Target Start/End: Original strand, 10076767 - 10077046
Alignment:
| Q |
18 |
acaagcaaccatgctcaatcttcaggctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagat |
117 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10076767 |
acaaacaaccatgctcaatcttcaggctgtactagatgatgcagaggagaagcagatcagcaatccccatgtcagacagtggcttgataacttgaaagat |
10076866 |
T |
|
| Q |
118 |
gttgtctttgatgctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaactaatcaggtgt |
217 |
Q |
| |
|
| |||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
10076867 |
gctgtctttgatgccgaggacttgctcaacgaaatcagttacgattcactgcgatgcaaggtggagaatgcacaagctcaaaacaaaactaatcaggtgt |
10076966 |
T |
|
| Q |
218 |
ggaacttcctttcttctccttttaatagtttttacaaagagatcaattcccagatgaagatcatgtgtgatagcttgcaa |
297 |
Q |
| |
|
|||||||||||| |||||||||||||| || ||||||||||||||||| || | ||||||||||||||| || |||||| |
|
|
| T |
10076967 |
tgaacttcctttcatctccttttaatagcttctacaaagagatcaattctcaaacgaagatcatgtgtgaaaggttgcaa |
10077046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 29 - 287
Target Start/End: Original strand, 10580113 - 10580371
Alignment:
| Q |
29 |
tgctcaatcttcaggctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttga |
128 |
Q |
| |
|
|||||| |||||| | ||| || ||||||||||||||||||||||||| ||||| |||||||| ||||||||| |||||||||||| | || |||| |
|
|
| T |
10580113 |
tgctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaataatcctgctgtcaaactatggcttgatgacttgaaagatgctatcattga |
10580212 |
T |
|
| Q |
129 |
tgctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaactaatcaggtgtggaacttcctt |
228 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10580213 |
tgctgaggacttgctcaatgaaatcagttacgattccctgcgatgcaaggtggagaatacacaagctcaaaacaaaactaatcaggtgtggaacttcctt |
10580312 |
T |
|
| Q |
229 |
tcttctccttttaatagtttttacaaagagatcaattcccagatgaagatcatgtgtga |
287 |
Q |
| |
|
||||||||||||||||| || || | ||||||||||||||||||||||||||||||||| |
|
|
| T |
10580313 |
tcttctccttttaatagcttctatagagagatcaattcccagatgaagatcatgtgtga |
10580371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 29 - 297
Target Start/End: Complemental strand, 10376402 - 10376134
Alignment:
| Q |
29 |
tgctcaatcttcaggctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttga |
128 |
Q |
| |
|
|||||| |||||| | ||| || ||||||||||||||||||||||||| |||||| |||||| || ||||||||| |||||||||||| | ||||||| |
|
|
| T |
10376402 |
tgctcactcttcaagttgtgctggatgatgcagaggagaagcagatcatcaatccttctgtcaagcaatggcttgatgacttgaaagatgctatctttga |
10376303 |
T |
|
| Q |
129 |
tgctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaactaatcaggtgtggaacttcctt |
228 |
Q |
| |
|
||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
10376302 |
tgctgaggacttgctcaatgaaatcagttatgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaactaatcaggtgttgaacttcctt |
10376203 |
T |
|
| Q |
229 |
tcttctccttttaatagtttttacaaagagatcaattcccagatgaagatcatgtgtgatagcttgcaa |
297 |
Q |
| |
|
|||||||||||||| | || |||| |||||||||||| || |||||| |||||||||||||| ||||| |
|
|
| T |
10376202 |
tcttctccttttaacaccttctacagagagatcaattctcaaatgaaggtcatgtgtgatagcctgcaa |
10376134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 31 - 300
Target Start/End: Complemental strand, 10434599 - 10434330
Alignment:
| Q |
31 |
ctcaatcttcaggctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatg |
130 |
Q |
| |
|
|||| |||||| | ||| || ||||||||||||||||||||||||| ||| || ||||||||| ||||||||| |||||||||||| ||||||||||| |
|
|
| T |
10434599 |
ctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaacaaacctgctgtcaaacaatggcttgatgacttgaaagatgctgtctttgatg |
10434500 |
T |
|
| Q |
131 |
ctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaactaatcaggtgtggaacttcctttc |
230 |
Q |
| |
|
| ||||| |||||||||||||||||||| |||||||| |||| ||||||||||||| || | ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
10434499 |
ccgaggacttgctcaacgaaatcagttatgattcccttcgatccaaggtggagaatacacatgctcaaaacaaaactaatcaggtgttgaacttcctttc |
10434400 |
T |
|
| Q |
231 |
ttctccttttaatagtttttacaaagagatcaattcccagatgaagatcatgtgtgatagcttgcaactt |
300 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||| || ||||||||||||||||| |||||||||||| |
|
|
| T |
10434399 |
atctccttttaatagtttctacagagagatcaattctcaaatgaagatcatgtgtgaaagcttgcaactt |
10434330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 36 - 297
Target Start/End: Original strand, 8860805 - 8861066
Alignment:
| Q |
36 |
tcttcaggctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgag |
135 |
Q |
| |
|
|||||| ||||| || ||||||||||||||||||||||||| ||||| ||||||||| ||||||||| |||||||||||| | |||||||||||||| |
|
|
| T |
8860805 |
tcttcaagctgtgctggatgatgcagaggagaagcagatcaacaatcgtgctgtcaaacaatggcttgatgacttgaaagatgctctctttgatgctgag |
8860904 |
T |
|
| Q |
136 |
gatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaactaatcaggtgtggaacttcctttcttctc |
235 |
Q |
| |
|
|||||||||||| |||||||||| ||||| | ||||||||||||||| || || ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8860905 |
gatttgctcaaccaaatcagttatgattcattacgatgcaaggtggaggatacacaagctgcaaacaaaactaatcaggtgtggaacttcctttcttctc |
8861004 |
T |
|
| Q |
236 |
cttttaatagtttttacaaagagatcaattcccagatgaagatcatgtgtgatagcttgcaa |
297 |
Q |
| |
|
||||||| | || |||| ||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
8861005 |
cttttaacaccttctacagagagatcaattcccaaatgaagatcatgtgtgatagcttgcaa |
8861066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 29 - 297
Target Start/End: Original strand, 10088302 - 10088570
Alignment:
| Q |
29 |
tgctcaatcttcaggctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttga |
128 |
Q |
| |
|
|||||| |||||| | ||| || |||||||| |||||||||||||||| |||||| |||||||| ||||||||| |||||||||||| ||||||||| |
|
|
| T |
10088302 |
tgctcactcttcaagttgtgctggatgatgcggaggagaagcagatcaacaatcctgctgtcaaactatggcttgatgacttgaaagatgctgtctttga |
10088401 |
T |
|
| Q |
129 |
tgctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaactaatcaggtgtggaacttcctt |
228 |
Q |
| |
|
||||||||| ||||||| |||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||| | |||||||| |||||||||| |
|
|
| T |
10088402 |
tgctgaggacttgctcagcgaaatcagttatgattcccttcgatgcaaggtggagaatgcacaagctcaaaacaaaagttatcaggtgatgaacttcctt |
10088501 |
T |
|
| Q |
229 |
tcttctccttttaatagtttttacaaagagatcaattcccagatgaagatcatgtgtgatagcttgcaa |
297 |
Q |
| |
|
|| |||||||||||||| || |||| |||||||||||| || ||||||||||||||||| ||||||||| |
|
|
| T |
10088502 |
tcatctccttttaatagcttctacagagagatcaattctcaaatgaagatcatgtgtgaaagcttgcaa |
10088570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 29 - 297
Target Start/End: Original strand, 10195185 - 10195453
Alignment:
| Q |
29 |
tgctcaatcttcaggctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttga |
128 |
Q |
| |
|
|||||| |||||| | ||| || |||||||| |||||||||||||||| |||||| |||||||| ||||||||| |||||||||||| ||||||||| |
|
|
| T |
10195185 |
tgctcactcttcaagttgtgctggatgatgcggaggagaagcagatcaacaatcctgctgtcaaactatggcttgatgacttgaaagatgctgtctttga |
10195284 |
T |
|
| Q |
129 |
tgctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaactaatcaggtgtggaacttcctt |
228 |
Q |
| |
|
||||||||| ||| ||| |||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||| | |||||||| |||||||||| |
|
|
| T |
10195285 |
tgctgaggacttgttcagcgaaatcagttatgattcccttcgatgcaaggtggagaatgcacaagctcaaaacaaaagttatcaggtgatgaacttcctt |
10195384 |
T |
|
| Q |
229 |
tcttctccttttaatagtttttacaaagagatcaattcccagatgaagatcatgtgtgatagcttgcaa |
297 |
Q |
| |
|
|| |||||||||||||| || |||| |||||||||||| || ||||||||||||||||| ||||||||| |
|
|
| T |
10195385 |
tcatctccttttaatagcttctacagagagatcaattctcaaatgaagatcatgtgtgaaagcttgcaa |
10195453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 36 - 300
Target Start/End: Original strand, 10888825 - 10889089
Alignment:
| Q |
36 |
tcttcaggctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgag |
135 |
Q |
| |
|
|||||| ||||| || |||||||| |||||||||||||||| ||| | ||||||||| ||||||||| |||||||||||| |||||||||||| ||| |
|
|
| T |
10888825 |
tcttcaagctgtgctggatgatgctgaggagaagcagatcaacaaccgtgctgtcaaacaatggcttgatgacttgaaagatgctgtctttgatgcggag |
10888924 |
T |
|
| Q |
136 |
gatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaactaatcaggtgtggaacttcctttcttctc |
235 |
Q |
| |
|
|||||||| ||| |||| ||||| || || |||||||||||||||||||| || || | ||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
10888925 |
gatttgctgaaccaaattagttatgaatcattgcgatgcaaggtggagaatacacaatccacaaacaaaactagtcaggtgtggagcttcctttcttctc |
10889024 |
T |
|
| Q |
236 |
cttttaatagtttttacaaagagatcaattcccagatgaagatcatgtgtgatagcttgcaactt |
300 |
Q |
| |
|
||||||| | || |||| ||||||||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
10889025 |
cttttaacaccttctacagagagatcaattcccaaatgaagatcatgtgtaatagcttgcaactt |
10889089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 43 - 300
Target Start/End: Complemental strand, 11160560 - 11160303
Alignment:
| Q |
43 |
gctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgaggatttgc |
142 |
Q |
| |
|
||||| || |||||||||||||||||| |||||| ||| | ||||||||| ||||||||| |||||||||||| |||||||||||| |||||||||| |
|
|
| T |
11160560 |
gctgtgctggatgatgcagaggagaagtagatcaacaaccgtgctgtcaaacaatggcttgatgacttgaaagatgctgtctttgatgccgaggatttgc |
11160461 |
T |
|
| Q |
143 |
tcaacgaaatcagttacgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaactaatcaggtgtggaacttcctttcttctccttttaa |
242 |
Q |
| |
|
| || |||| ||||| || || ||||||||||||||||||||| || || | ||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
11160460 |
tgaatcaaattagttatgaatcactgcgatgcaaggtggagaatacacaatccacaaacaaaactagtcaggtgtggagcttcctttcttctccttttaa |
11160361 |
T |
|
| Q |
243 |
tagtttttacaaagagatcaattcccagatgaagatcatgtgtgatagcttgcaactt |
300 |
Q |
| |
|
| || || | ||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
11160360 |
caccttctatagagagatcaattcccaaatgaagatcatgtgtgatagcttgcaactt |
11160303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 29 - 298
Target Start/End: Complemental strand, 10364355 - 10364086
Alignment:
| Q |
29 |
tgctcaatcttcaggctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttga |
128 |
Q |
| |
|
|||||| |||||| | ||| || ||||| ||||| ||||||||||||| |||||| ||||||||| ||||||||| ||||||||||| ||||||||| |
|
|
| T |
10364355 |
tgctcactcttcaagttgtgctggatgacgcagaagagaagcagatcaacaatcctgctgtcaaacaatggcttgatggcttgaaagatgctgtctttga |
10364256 |
T |
|
| Q |
129 |
tgctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaactaatcaggtgtggaacttcctt |
228 |
Q |
| |
|
||| ||||||||||| ||||||||||||| |||||||||||||||| |||||| | | ||||| ||||| || |||||||||||||||||||||| |
|
|
| T |
10364255 |
tgccgaggatttgcttcacgaaatcagttatgattccctgcgatgcacaatggagagtaaacaagctggaaacagaagtaatcaggtgtggaacttcctt |
10364156 |
T |
|
| Q |
229 |
tcttctccttttaatagtttttacaaagagatcaattcccagatgaagatcatgtgtgatagcttgcaac |
298 |
Q |
| |
|
| |||||||| ||||| || || | ||||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
10364155 |
ttatctcctttcaatagcttctatagagagatcaattcccagatgaagatcatgtgtgaaagcctgcaac |
10364086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 17 - 144
Target Start/End: Original strand, 10085608 - 10085735
Alignment:
| Q |
17 |
cacaagcaaccatgctcaatcttcaggctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaaga |
116 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10085608 |
cacaaacaaccatgctcaatcttcaggctgtactagatgatgcaaaggagaagcagatcagtaatccccatgtcaaacagtggcttgataacttgaaaga |
10085707 |
T |
|
| Q |
117 |
tgttgtctttgatgctgaggatttgctc |
144 |
Q |
| |
|
|||| ||||||||||||| ||||||||| |
|
|
| T |
10085708 |
tgttttctttgatgctgaagatttgctc |
10085735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 17 - 144
Target Start/End: Original strand, 10192528 - 10192655
Alignment:
| Q |
17 |
cacaagcaaccatgctcaatcttcaggctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaaga |
116 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10192528 |
cacaaacaaccatgctcaatcttcaggctgtactagatgatgcaaaggagaagcagatcagtaatccccatgtcaaacagtggcttgataacttgaaaga |
10192627 |
T |
|
| Q |
117 |
tgttgtctttgatgctgaggatttgctc |
144 |
Q |
| |
|
|||| ||||||||||||| ||||||||| |
|
|
| T |
10192628 |
tgttttctttgatgctgaagatttgctc |
10192655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 36 - 287
Target Start/End: Complemental strand, 11149404 - 11149153
Alignment:
| Q |
36 |
tcttcaggctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgag |
135 |
Q |
| |
|
|||||| ||||| || |||||||| || ||||||||||||| |||||| ||||||||| ||||||||| |||||||||||| | |||||||||| ||| |
|
|
| T |
11149404 |
tcttcaagctgtgctggatgatgctgatgagaagcagatcaacaatcctgctgtcaaacaatggcttgatgacttgaaagatgctatctttgatgccgag |
11149305 |
T |
|
| Q |
136 |
gatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaactaatcaggtgtggaacttcctttcttctc |
235 |
Q |
| |
|
|||||||| || |||| ||||| || || ||||||||||||||||||||| || || | ||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
11149304 |
gatttgctgaatcaaattagttatgaatcactgcgatgcaaggtggagaatacacaatccacaaacaaaactagtcaggtgtggagcttcctttcttctc |
11149205 |
T |
|
| Q |
236 |
cttttaatagtttttacaaagagatcaattcccagatgaagatcatgtgtga |
287 |
Q |
| |
|
||||||| | | |||| ||||||||||||||| ||||||| ||||||||| |
|
|
| T |
11149204 |
cttttaacaccatctacagagagatcaattcccaaatgaagaccatgtgtga |
11149153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 23 - 300
Target Start/End: Original strand, 11768740 - 11769017
Alignment:
| Q |
23 |
caaccatgctcaatcttcaggctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgt |
122 |
Q |
| |
|
||||| |||||| ||||||||||| || |||||||| |||||||||||||| | ||||| ||||||||| ||||||||| |||||||||| | | | |
|
|
| T |
11768740 |
caaccctgctcacacttcaggctgtactggatgatgcggaggagaagcagatgaacaatcttgctgtcaaacaatggcttgatgacttgaaagacgctat |
11768839 |
T |
|
| Q |
123 |
ctttgatgctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaactaatcaggtgtggaac |
222 |
Q |
| |
|
|||||||||||||||||| ||| | |||| ||||| || ||||| ||||||||| ||||||| | ||||| ||||||||||||||||||||||||| |
|
|
| T |
11768840 |
ctttgatgctgaggatttactcgatcaaataagttatgactccctccgatgcaagatggagaagaaacaagctagaaacaaaactaatcaggtgtggaac |
11768939 |
T |
|
| Q |
223 |
ttcctttcttctccttttaatagtttttacaaagagatcaattcccagatgaagatcatgtgtgatagcttgcaactt |
300 |
Q |
| |
|
|| ||||| || |||||||| | | || ||||||||||||||| ||||||||||||||||| ||| |||||||| |
|
|
| T |
11768940 |
ttactttcatccccttttaaaaacatctatggagagatcaattcccatatgaagatcatgtgtgaaagcctgcaactt |
11769017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 36 - 287
Target Start/End: Complemental strand, 11131576 - 11131325
Alignment:
| Q |
36 |
tcttcaggctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgag |
135 |
Q |
| |
|
|||||| ||||| || |||||||| |||||||||||||||| ||| | ||||||| | ||| ||||| |||||||||||| | |||||||||| ||| |
|
|
| T |
11131576 |
tcttcaagctgtgctggatgatgctgaggagaagcagatcaacaaccgtgctgtcaaaaaatgggttgatgacttgaaagatgctatctttgatgcggag |
11131477 |
T |
|
| Q |
136 |
gatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaactaatcaggtgtggaacttcctttcttctc |
235 |
Q |
| |
|
|||||||| || |||| ||||| || || ||||||||||||||||||||| || ||||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
11131476 |
gatttgctgaatcaaattagttatgagtcactgcgatgcaaggtggagaatacacaagctgcaaacaaaactaatcaggtctggaacttcctttcttctc |
11131377 |
T |
|
| Q |
236 |
cttttaatagtttttacaaagagatcaattcccagatgaagatcatgtgtga |
287 |
Q |
| |
|
||||||| | | || ||||||||||||||| || |||| ||||||||| |
|
|
| T |
11131376 |
cttttaaaaacatctatggagagatcaattcccaaattaagaccatgtgtga |
11131325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 36 - 285
Target Start/End: Original strand, 13332423 - 13332672
Alignment:
| Q |
36 |
tcttcaggctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgag |
135 |
Q |
| |
|
||||||||| || || ||||||||||| ||||||| |||| ||| | ||||||||| ||| | ||| | ||||||||| ||| |||||||||| |
|
|
| T |
13332423 |
tcttcaggcggtgctggatgatgcagaacagaagcaaatcaccaacactgctgtcaaacaatggttggatcagctgaaagatgcaatctatgatgctgag |
13332522 |
T |
|
| Q |
136 |
gatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaactaatcaggtgtggaacttcctttcttctc |
235 |
Q |
| |
|
|||||||| ||| |||||| |||||| ||||||||||| ||||||||||| | ||||| |||||| ||||||||||| |||||| || |||| |||| |
|
|
| T |
13332523 |
gatttgcttaaccaaatcaattacgactccctgcgatgtaaggtggagaagaaacaagctgaaaacatgactaatcaggtttggaacctcttttcgtctc |
13332622 |
T |
|
| Q |
236 |
cttttaatagtttttacaaagagatcaattcccagatgaagatcatgtgt |
285 |
Q |
| |
|
||||||| | | | || |||||||||||| || |||||||| |||||| |
|
|
| T |
13332623 |
cttttaaaaatctctatggagagatcaattcacaaatgaagattatgtgt |
13332672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 126 - 285
Target Start/End: Original strand, 13289274 - 13289433
Alignment:
| Q |
126 |
tgatgctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaactaatcaggtgtggaacttc |
225 |
Q |
| |
|
|||||||||||||||||| ||| |||||| |||||| ||||||||||| ||||||||||| | ||||| |||||| ||||||||||| |||||| || |
|
|
| T |
13289274 |
tgatgctgaggatttgcttaaccaaatcaattacgactccctgcgatgtaaggtggagaagaaacaagctgaaaacatgactaatcaggtttggaacctc |
13289373 |
T |
|
| Q |
226 |
ctttcttctccttttaatagtttttacaaagagatcaattcccagatgaagatcatgtgt |
285 |
Q |
| |
|
|||| ||||||||||| | | | || |||||||||||| || |||||||| |||||| |
|
|
| T |
13289374 |
ttttcatctccttttaaaactctctatggagagatcaattcacaaatgaagattatgtgt |
13289433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 126 - 285
Target Start/End: Original strand, 13160589 - 13160748
Alignment:
| Q |
126 |
tgatgctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaactaatcaggtgtggaacttc |
225 |
Q |
| |
|
|||||||||||||||||| ||| |||||| |||||| ||||||||||| | ||||||||| | ||||| |||||| ||||||||||| |||||| || |
|
|
| T |
13160589 |
tgatgctgaggatttgcttaaccaaatcaattacgactccctgcgatgtacggtggagaagaaacaagctgaaaacatgactaatcaggtttggaacctc |
13160688 |
T |
|
| Q |
226 |
ctttcttctccttttaatagtttttacaaagagatcaattcccagatgaagatcatgtgt |
285 |
Q |
| |
|
|||| ||||||||||| | | | || |||||||||||| || |||||||| |||||| |
|
|
| T |
13160689 |
ttttcatctccttttaaaaatctctatggagagatcaattcacaaatgaagattatgtgt |
13160748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 36 - 285
Target Start/End: Original strand, 13170550 - 13170799
Alignment:
| Q |
36 |
tcttcaggctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgag |
135 |
Q |
| |
|
||||||||| ||||| ||||||||||| ||||||| |||| ||| | ||||||||| ||| | ||| | ||||||||| ||| |||||||||| |
|
|
| T |
13170550 |
tcttcaggcggttcttgatgatgcagaacagaagcaaatcaccaacactgctgtcaaacaatggatggatcaactgaaagatgcaatctatgatgctgag |
13170649 |
T |
|
| Q |
136 |
gatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaactaatcaggtgtggaacttcctttcttctc |
235 |
Q |
| |
|
|||||||| ||| |||||| |||||| ||||| ||||| ||||||||||| | || || |||||| ||||||||||| |||||| || |||| | || |
|
|
| T |
13170650 |
gatttgcttaaccaaatcaattacgactccctccgatgtaaggtggagaagatacaatctgaaaacatgactaatcaggtttggaacctcttttcatgtc |
13170749 |
T |
|
| Q |
236 |
cttttaatagtttttacaaagagatcaattcccagatgaagatcatgtgt |
285 |
Q |
| |
|
||||||| | | | || |||||||||||| || |||||||| |||||| |
|
|
| T |
13170750 |
cttttaaaaatctctatggagagatcaattcacaaatgaagattatgtgt |
13170799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 126 - 285
Target Start/End: Original strand, 13343698 - 13343857
Alignment:
| Q |
126 |
tgatgctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaactaatcaggtgtggaacttc |
225 |
Q |
| |
|
|||||||||||||||||| ||| |||||| ||||| ||||||||||| | ||||||||| | ||||| |||||| ||||||||||| |||||| || |
|
|
| T |
13343698 |
tgatgctgaggatttgcttaaccaaatcaactacgactccctgcgatgtacggtggagaagaaacaagctgaaaacatgactaatcaggtttggaacctc |
13343797 |
T |
|
| Q |
226 |
ctttcttctccttttaatagtttttacaaagagatcaattcccagatgaagatcatgtgt |
285 |
Q |
| |
|
|||| ||||| ||||| | | | || |||||||||||| || |||||||| |||||| |
|
|
| T |
13343798 |
ttttcgtctccgtttaaaaatctctatggagagatcaattcacaaatgaagattatgtgt |
13343857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 36 - 185
Target Start/End: Original strand, 10126435 - 10126584
Alignment:
| Q |
36 |
tcttcaggctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgag |
135 |
Q |
| |
|
|||| ||| ||| ||||||||||||||||||||||||||| ||| ||| ||||||| ||||| ||| || ||||||| ||| |||||||||| |
|
|
| T |
10126435 |
tcttgaggttgtactagatgatgcagaggagaagcagatcctcaaacccagaatcaaacaatggctggatcggttaaaagatgcaatctatgatgctgag |
10126534 |
T |
|
| Q |
136 |
gatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaa |
185 |
Q |
| |
|
||||||||||| ||||||| ||| || |||| ||||||||| ||||||| |
|
|
| T |
10126535 |
gatttgctcaatcaaatcagctacaatgccctacgatgcaagctggagaa |
10126584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 185
Target Start/End: Original strand, 10260205 - 10260354
Alignment:
| Q |
36 |
tcttcaggctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgag |
135 |
Q |
| |
|
|||| ||| ||| ||||||||||||||||||||||||||| ||| ||| ||||||| ||| | ||| || ||||||| ||| |||||||||| |
|
|
| T |
10260205 |
tcttgaggttgtactagatgatgcagaggagaagcagatcctcaaacccagaatcaaacaatggttggatcggttaaaagatgcaatctatgatgctgag |
10260304 |
T |
|
| Q |
136 |
gatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaa |
185 |
Q |
| |
|
||||||||||| ||||||| ||| || |||| ||||||||| ||||||| |
|
|
| T |
10260305 |
gatttgctcaataaaatcagctacaatgccctacgatgcaagctggagaa |
10260354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 182
Target Start/End: Original strand, 10526929 - 10527024
Alignment:
| Q |
87 |
tgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtgga |
182 |
Q |
| |
|
||||||||| |||||| || |||||||||||| | ||||||||||| |||||||| || |||||| |||||| | ||||| ||||||||||| |
|
|
| T |
10526929 |
tgtcaaacaatggcttcatgacttgaaagatgcaatatttgatgctgaagatttgcttgacttaatcagctacgatgctctgcggtgcaaggtgga |
10527024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 10517058 - 10517114
Alignment:
| Q |
87 |
tgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgaggatttgct |
143 |
Q |
| |
|
||||||||| ||||||||| |||||||||||| |||||||| |||| |||||||| |
|
|
| T |
10517058 |
tgtcaaacaatggcttgatgacttgaaagatgcaatctttgattctgaagatttgct |
10517114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 10541544 - 10541600
Alignment:
| Q |
87 |
tgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgaggatttgct |
143 |
Q |
| |
|
|||||| || ||||||||| |||||||||||| ||||||||||||| |||||||| |
|
|
| T |
10541544 |
tgtcaagcaatggcttgatgacttgaaagatgcaatctttgatgctgaagatttgct |
10541600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 11782478 - 11782422
Alignment:
| Q |
87 |
tgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgaggatttgct |
143 |
Q |
| |
|
||||||||| ||||||||| |||||||||||| | ||||||||||| |||||||| |
|
|
| T |
11782478 |
tgtcaaacaatggcttgatgacttgaaagatgcaatatttgatgctgaagatttgct |
11782422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 29 - 297
Target Start/End: Original strand, 26906409 - 26906677
Alignment:
| Q |
29 |
tgctcaatcttcaggctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttga |
128 |
Q |
| |
|
|||||| ||| |||| ||| || ||||||||||||||||| ||||||| |||||| ||||||||| ||||||||| |||||||||||| | ||||||| |
|
|
| T |
26906409 |
tgctcactctgcaggttgtgctggatgatgcagaggagaaacagatcaacaatcctgctgtcaaacaatggcttgatgacttgaaagatgctatctttga |
26906508 |
T |
|
| Q |
129 |
tgctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaactaatcaggtgtggaacttcctt |
228 |
Q |
| |
|
|| |||||| |||||||||||||| ||||| ||||||||||||||||| || |||||| || ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
26906509 |
tgttgaggacttgctcaacgaaattagttatgattccctgcgatgcaaagtcgagaatacacaagctcaaaacaaaactaatcaggtgttgaacttcctt |
26906608 |
T |
|
| Q |
229 |
tcttctccttttaatagtttttacaaagagatcaattcccagatgaagatcatgtgtgatagcttgcaa |
297 |
Q |
| |
|
|| |||||||||||||| || |||| |||||||||||| || |||||||| |||||||| ||| ||||| |
|
|
| T |
26906609 |
tcatctccttttaatagcttctacagagagatcaattctcaaatgaagataatgtgtgaaagcctgcaa |
26906677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 31 - 300
Target Start/End: Complemental strand, 50360 - 50094
Alignment:
| Q |
31 |
ctcaatcttcaggctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatg |
130 |
Q |
| |
|
|||| |||||| | ||| || |||||||| |||||||||||||||| |||||| |||||||| ||||||||| |||||||||||| ||||||||||| |
|
|
| T |
50360 |
ctcactcttcaagttgtgctggatgatgctgaggagaagcagatcaacaatcctgctgtcaaactatggcttgatgacttgaaagatgctgtctttgatg |
50261 |
T |
|
| Q |
131 |
ctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaactaatcaggtgtggaacttcctttc |
230 |
Q |
| |
|
||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| | |||||||| ||||||| |||| |
|
|
| T |
50260 |
ctgaggacttgctcagcgaaatcagttatgattccctgcgatgcaaggtggagaatgcaaaagctcaaagcaaaatttatcaggtgatgaacttcttttc |
50161 |
T |
|
| Q |
231 |
ttctccttttaatagtttttacaaagagatcaattcccagatgaagatcatgtgtgatagcttgcaactt |
300 |
Q |
| |
|
||| ||||||| | || ||||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
50160 |
atcttcttttaaaa---actatggagagatcaattcccagatgaagatcatgtgtgaaagcctgcaactt |
50094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 31 - 287
Target Start/End: Complemental strand, 44958264 - 44958008
Alignment:
| Q |
31 |
ctcaatcttcaggctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatg |
130 |
Q |
| |
|
|||| |||||||| ||| || |||||||||||||||||||| |||| ||| | ||||||||| ||||||||| |||||||| || | ||||||| |
|
|
| T |
44958264 |
ctcactcttcaggttgtgcttgatgatgcagaggagaagcaaatcaccaaccttactgtcaaacaatggcttgatgacttgaaaaatacaatatttgatg |
44958165 |
T |
|
| Q |
131 |
ctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaactaatcaggtgtggaacttcctttc |
230 |
Q |
| |
|
| ||||||||||||||| |||| || || ||||||||||| ||||| ||||||||| || ||| | ||||||||||||||||| |||||||||||||| |
|
|
| T |
44958164 |
ccgaggatttgctcaaccaaattagctatgattccctgcgttgcaaagtggagaatacacaagttgccaacaaaactaatcaggtctggaacttcctttc |
44958065 |
T |
|
| Q |
231 |
ttctccttttaatagtttttacaaagagatcaattcccagatgaagatcatgtgtga |
287 |
Q |
| |
|
||||||||||| | || || |||||||||||| || |||||||| |||||||| |
|
|
| T |
44958064 |
atctccttttaaaaacttctatggagagatcaattctcaaatgaagattatgtgtga |
44958008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 52 - 185
Target Start/End: Original strand, 11484552 - 11484685
Alignment:
| Q |
52 |
gatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgaggatttgctcaacgaaa |
151 |
Q |
| |
|
||||||||||| |||||||||||| | ||| | ||||||| ||||||||| |||||||||| |||||||||||||||||||||| || |||| |
|
|
| T |
11484552 |
gatgatgcagaagagaagcagatccttcaacccaaaatcaaacaatggcttgatcggttgaaagatgcaatctttgatgctgaggatttgcttaatgaaa |
11484651 |
T |
|
| Q |
152 |
tcagttacgattccctgcgatgcaaggtggagaa |
185 |
Q |
| |
|
|||| || ||| || ||||||||||||| ||||| |
|
|
| T |
11484652 |
tcagctatgatgccttgcgatgcaaggtagagaa |
11484685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 31 - 186
Target Start/End: Complemental strand, 31680294 - 31680139
Alignment:
| Q |
31 |
ctcaatcttcaggctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatg |
130 |
Q |
| |
|
|||| |||||| |||||||| |||||||| ||| |||||||||||| ||||| | ||||||||| ||||||||| | |||||||||| | | ||||| |
|
|
| T |
31680294 |
ctcactcttcatgctgttcttgatgatgctgagaagaagcagatcaacaatcttcctgtcaaacaatggcttgatgagttgaaagatgcaatatatgatg |
31680195 |
T |
|
| Q |
131 |
ctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaat |
186 |
Q |
| |
|
||||||||||||||||| | |||||||| |||| ||| || |||||||||||||| |
|
|
| T |
31680194 |
ctgaggatttgctcaaccagatcagttatgattgccttagaagcaaggtggagaat |
31680139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 126 - 285
Target Start/End: Complemental strand, 146399 - 146240
Alignment:
| Q |
126 |
tgatgctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaactaatcaggtgtggaacttc |
225 |
Q |
| |
|
|||||||||||||||||| ||| |||||| |||||| ||||||||||| | ||||||||| | ||||| |||||| ||||||||||| |||||| || |
|
|
| T |
146399 |
tgatgctgaggatttgcttaaccaaatcaattacgactccctgcgatgtacggtggagaagaaacaagctgaaaacatgactaatcaggtttggaacctc |
146300 |
T |
|
| Q |
226 |
ctttcttctccttttaatagtttttacaaagagatcaattcccagatgaagatcatgtgt |
285 |
Q |
| |
|
|||| ||||||||||| | | | || |||||||||||| || |||||||| |||||| |
|
|
| T |
146299 |
ttttcatctccttttaaaaatctctatggagagatcaattcacaaatgaagattatgtgt |
146240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 36 - 285
Target Start/End: Complemental strand, 136438 - 136189
Alignment:
| Q |
36 |
tcttcaggctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgag |
135 |
Q |
| |
|
||||||||| ||||| ||||||||||| ||||||| |||| ||| | ||||||||| ||| | ||| | ||||||||| ||| |||||||||| |
|
|
| T |
136438 |
tcttcaggcggttcttgatgatgcagaacagaagcaaatcaccaacactgctgtcaaacaatggatggatcaactgaaagatgcaatctatgatgctgag |
136339 |
T |
|
| Q |
136 |
gatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaactaatcaggtgtggaacttcctttcttctc |
235 |
Q |
| |
|
|||||||| ||| |||||| |||||| ||||| ||||| ||||||||||| | || || |||||| ||||||||||| |||||| || |||| | || |
|
|
| T |
136338 |
gatttgcttaaccaaatcaattacgactccctccgatgtaaggtggagaagatacaatctgaaaacatgactaatcaggtttggaacctcttttcatgtc |
136239 |
T |
|
| Q |
236 |
cttttaatagtttttacaaagagatcaattcccagatgaagatcatgtgt |
285 |
Q |
| |
|
||||||| | | | || |||||||||||| || |||||||| |||||| |
|
|
| T |
136238 |
cttttaaaaatctctatggagagatcaattcacaaatgaagattatgtgt |
136189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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