View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6965_high_14 (Length: 277)

Name: NF6965_high_14
Description: NF6965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6965_high_14
NF6965_high_14
[»] chr1 (15 HSPs)
chr1 (11-258)||(19279213-19279460)
chr1 (18-258)||(13080910-13081150)
chr1 (18-254)||(13271493-13271729)
chr1 (18-258)||(12963920-12964160)
chr1 (11-258)||(30368153-30368400)
chr1 (18-252)||(13086014-13086248)
chr1 (11-254)||(13244570-13244813)
chr1 (11-258)||(13070221-13070468)
chr1 (37-258)||(13204385-13204606)
chr1 (11-258)||(13094299-13094546)
chr1 (11-257)||(13100901-13101146)
chr1 (41-258)||(13007130-13007347)
chr1 (22-255)||(13065261-13065494)
chr1 (11-258)||(13129728-13129975)
chr1 (11-257)||(13161421-13161667)


Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 11 - 258
Target Start/End: Complemental strand, 19279460 - 19279213
Alignment:
Q  11 acctgtgtgtgaaacttccataatacagcagctgcaaccattttcatttgaaggaaagtaatatcttttccgagacagcttctcggacctgcattaaacg 110  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19279460 acctgtatgcgaaacttccataatacagcagctgcaaccattttcatttgaaggaaagtaatatcttttccgagacagcttctcggacctgcattaaacg 19279361  T
Q  111 ctatgaacttgtacgatggtacatgtataatttgtcctctattcgatatccatctctcgggccgaaattccaggcaatcatcaccccatatttgttccat 210  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  19279360 ctatgaacttgtacgatggtacatgtataatttgtcctctatccgatatccatctctcaggccgaaattctaggcaatcatcaccccatatttgttccat 19279261  T
Q  211 ccttcccattgcatacaaagagtatattaactttgtatttggactaac 258  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||    
T  19279260 ccttcccattgcatacaaagagtatattaactttgtatttagactaac 19279213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 18 - 258
Target Start/End: Complemental strand, 13081150 - 13080910
Alignment:
Q  18 tgtgaaacttccataatacagcagctgcaaccattttcatttgaaggaaagtaatatcttttccgagacagcttctcggacctgcattaaacgctatgaa 117  Q
    ||||||||||  |||| || |||||||||||||||||||||||||| ||| |||||||||| || ||||||||||| |||||||||||||||||||||||    
T  13081150 tgtgaaacttaaataaaactgcagctgcaaccattttcatttgaagaaaactaatatctttcccaagacagcttcttggacctgcattaaacgctatgaa 13081051  T
Q  118 cttgtacgatggtacatgtataatttgtcctctattcgatatccatctctcgggccgaaattccaggcaatcatcaccccatatttgttccatccttccc 217  Q
    ||| || || || || |||||||||||||||||||  |||||||||||||| |||  ||| |||| |||||| || ||||||||||| ||||||||||||    
T  13081050 cttataagacggcacttgtataatttgtcctctatctgatatccatctctcaggcttaaactccaagcaatcctctccccatatttgctccatccttccc 13080951  T
Q  218 attgcatacaaagagtatattaactttgtatttggactaac 258  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  13080950 attgcatacaaagaatatattaactttgtatttggactaac 13080910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 13271493 - 13271729
Alignment:
Q  18 tgtgaaacttccataatacagcagctgcaaccattttcatttgaaggaaagtaatatcttttccgagacagcttctcggacctgcattaaacgctatgaa 117  Q
    ||||||||||||||||||||| |||||||||||||||||||||||  ||  |||||||||| || ||||||||||| ||||||||||| || ||||||||    
T  13271493 tgtgaaacttccataatacagaagctgcaaccattttcatttgaataaagctaatatctttcccaagacagcttctaggacctgcattgaatgctatgaa 13271592  T
Q  118 cttgtacgatggtacatgtataatttgtcctctattcgatatccatctctcgggccgaaattccaggcaatcatcaccccatatttgttccatccttccc 217  Q
    |||||| |||||||||||||||||||||||| |||  |||||||||||||| |||  ||| |||| ||||||| |||||||||  |||||||| ||||||    
T  13271593 cttgtaagatggtacatgtataatttgtcctttatctgatatccatctctcaggcttaaactccaagcaatcaccaccccatacatgttccattcttccc 13271692  T
Q  218 attgcatacaaagagtatattaactttgtatttggac 254  Q
    ||||||||||||||||||||||||||||| |||||||    
T  13271693 attgcatacaaagagtatattaactttgtgtttggac 13271729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 258
Target Start/End: Complemental strand, 12964160 - 12963920
Alignment:
Q  18 tgtgaaacttccataatacagcagctgcaaccattttcatttgaaggaaagtaatatcttttccgagacagcttctcggacctgcattaaacgctatgaa 117  Q
    ||||||||||||| || |||  ||| |||||||||||||||||||  ||  |||||||||| || | ||| ||||| ||||||||||| || ||||||||    
T  12964160 tgtgaaacttccacaacacattagcagcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctaggacctgcattgaatgctatgaa 12964061  T
Q  118 cttgtacgatggtacatgtataatttgtcctctattcgatatccatctctcgggccgaaattccaggcaatcatcaccccatatttgttccatccttccc 217  Q
    ||| || ||||| || |||||||||| ||||||||| ||||||||||| || |||  |||||||| |||||| || ||||||||||||||||||||||||    
T  12964060 cttataagatggcacttgtataatttctcctctatttgatatccatctttcaggcttaaattccaagcaatcttctccccatatttgttccatccttccc 12963961  T
Q  218 attgcatacaaagagtatattaactttgtatttggactaac 258  Q
    |||||||||||||| ||||| ||||||||||||||||||||    
T  12963960 attgcatacaaagaatatatcaactttgtatttggactaac 12963920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 11 - 258
Target Start/End: Complemental strand, 30368400 - 30368153
Alignment:
Q  11 acctgtgtgtgaaacttccataatacagcagctgcaaccattttcatttgaaggaaagtaatatcttttccgagacagcttctcggacctgcattaaacg 110  Q
    |||||| |||||||||||||||| |  |||||||||||||| |||||||||| |||| ||| |||||| || | ||| ||||| || |||| ||| || |    
T  30368400 acctgtatgtgaaacttccataacaaggcagctgcaaccatcttcatttgaacgaaactaagatctttacccatacaacttctaggtcctgtattgaaag 30368301  T
Q  111 ctatgaacttgtacgatggtacatgtataatttgtcctctattcgatatccatctctcgggccgaaattccaggcaatcatcaccccatatttgttccat 210  Q
    ||||||||||||| ||||||||||||||||| |||||||| |  |||| ||||||||| |||  |||||||| |||||| || |||||||||| ||||||    
T  30368300 ctatgaacttgtaagatggtacatgtataatgtgtcctctctctgatacccatctctcaggcttaaattccatgcaatcttctccccatattttttccat 30368201  T
Q  211 ccttcccattgcatacaaagagtatattaactttgtatttggactaac 258  Q
    ||||||||| |||||||||||||| |||||||| ||||||||||||||    
T  30368200 ccttcccatagcatacaaagagtaaattaacttggtatttggactaac 30368153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 13086014 - 13086248
Alignment:
Q  18 tgtgaaacttccataatacagcagctgcaaccattttcatttgaaggaaagtaatatcttttccgagacagcttctcggacctgcattaaacgctatgaa 117  Q
    |||||||||||||||| | ||||||||||||||||||||||||||  |   |||||||||| || ||||| ||||  |||||||||||||| ||||||||    
T  13086014 tgtgaaacttccataacatagcagctgcaaccattttcatttgaacaatgctaatatctttcccaagacaacttcgaggacctgcattaaatgctatgaa 13086113  T
Q  118 cttgtacgatggtacatgtataatttgtcctctattcgatatccatctctcgggccgaaattccaggcaatcatcaccccatatttgttccatccttccc 217  Q
    |||| | ||||||||||| | ||| |||||| |||  ||||||||||||||||||  |||||| | || ||| | |||||||||||||| ||||||||||    
T  13086114 cttgcaagatggtacatgcaaaatatgtcctttatctgatatccatctctcgggcttaaattcgaagcgatccttaccccatatttgtttcatccttccc 13086213  T
Q  218 attgcatacaaagagtatattaactttgtatttgg 252  Q
    |||||||||||||||||||||||||| ||||||||    
T  13086214 attgcatacaaagagtatattaacttagtatttgg 13086248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 11 - 254
Target Start/End: Complemental strand, 13244813 - 13244570
Alignment:
Q  11 acctgtgtgtgaaacttccataatacagcagctgcaaccattttcatttgaaggaaagtaatatcttttccgagacagcttctcggacctgcattaaacg 110  Q
    |||||| || ||||||||||||| | || ||||||||||||||||||||||| |||  ||| |||||| || | ||| ||||| ||||||||||| || |    
T  13244813 acctgtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacgaagctaagatctttcccaatacaacttctaggacctgcattgaaag 13244714  T
Q  111 ctatgaacttgtacgatggtacatgtataatttgtcctctattcgatatccatctctcgggccgaaattccaggcaatcatcaccccatatttgttccat 210  Q
    ||||||||||||| || ||||||| ||||||   |||||||   ||||||||||| || |||  |||||||| ||||||||| ||||||||||||| |||    
T  13244713 ctatgaacttgtaagacggtacatttataatccctcctctagctgatatccatctttcaggcttaaattccaagcaatcatctccccatatttgttgcat 13244614  T
Q  211 ccttcccattgcatacaaagagtatattaactttgtatttggac 254  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||    
T  13244613 ccttcccattgcatacaaagaatatatcaactttgtatttggac 13244570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 11 - 258
Target Start/End: Complemental strand, 13070468 - 13070221
Alignment:
Q  11 acctgtgtgtgaaacttccataatacagcagctgcaaccattttcatttgaaggaaagtaatatcttttccgagacagcttctcggacctgcattaaacg 110  Q
    |||||| |||||||||||  ||| | ||||||||| ||||| |||||||||| |||| ||| |||||| || | ||| ||||||||||||| ||| || |    
T  13070468 acctgtatgtgaaacttctgtaacaaagcagctgcgaccatcttcatttgaatgaaactaagatctttacccaaacaacttctcggacctgtattgaaag 13070369  T
Q  111 ctatgaacttgtacgatggtacatgtataatttgtcctctattcgatatccatctctcgggccgaaattccaggcaatcatcaccccatatttgttccat 210  Q
    ||||||||||||| ||||| ||||||||||| |||||| | |  |||| ||||||||| |||  |||||||| ||| || || |||||||||||||||||    
T  13070368 ctatgaacttgtaagatggaacatgtataatgtgtcctgtctctgatacccatctctcaggcttaaattccatgcagtcttctccccatatttgttccat 13070269  T
Q  211 ccttcccattgcatacaaagagtatattaactttgtatttggactaac 258  Q
    ||||||||| || ||||||||||| | |||| ||||||||||||||||    
T  13070268 ccttcccatagcgtacaaagagtacaataaccttgtatttggactaac 13070221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 37 - 258
Target Start/End: Original strand, 13204385 - 13204606
Alignment:
Q  37 agcagctgcaaccattttcatttgaaggaaagtaatatcttttccgagacagcttctcggacctgcattaaacgctatgaacttgtacgatggtacatgt 136  Q
    ||||||||| ||||| |||||||||| |||| ||| |||||| || | ||| ||||| ||||||| ||| || |||||||||||||| ||||||||||||    
T  13204385 agcagctgcgaccatcttcatttgaatgaaactaagatctttacccaaacaacttctaggacctgtattgaaagctatgaacttgtaagatggtacatgt 13204484  T
Q  137 ataatttgtcctctattcgatatccatctctcgggccgaaattccaggcaatcatcaccccatatttgttccatccttcccattgcatacaaagagtata 236  Q
    ||||| |||||| | |  |||| ||||||||| |||  |||||||| ||| || || |||||||||||||||||||||||||| || ||||||||||| |    
T  13204485 ataatgtgtcctgtctctgatacccatctctcaggcttaaattccatgcagtcttctccccatatttgttccatccttcccatagcgtacaaagagtaca 13204584  T
Q  237 ttaactttgtatttggactaac 258  Q
     |||| ||||||||||||||||    
T  13204585 ataaccttgtatttggactaac 13204606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 11 - 258
Target Start/End: Original strand, 13094299 - 13094546
Alignment:
Q  11 acctgtgtgtgaaacttccataatacagcagctgcaaccattttcatttgaaggaaagtaatatcttttccgagacagcttctcggacctgcattaaacg 110  Q
    |||||| |||||||||||| ||| | ||||||||| ||||| |||||||||| |||| |||||||||| || | |||  |||| || ||||  || || |    
T  13094299 acctgtatgtgaaacttccgtaacaaagcagctgcgaccatcttcatttgaatgaaactaatatctttacctatacaaattctgggtcctgtgttgaaag 13094398  T
Q  111 ctatgaacttgtacgatggtacatgtataatttgtcctctattcgatatccatctctcgggccgaaattccaggcaatcatcaccccatatttgttccat 210  Q
    ||||||||||||| ||||||||||||||||| | ||| || |  |||||||||||||| |||  |||||||| ||| || || |||||||||||||||||    
T  13094399 ctatgaacttgtaagatggtacatgtataatatctcccctctcagatatccatctctcaggcttaaattccatgcagtcttctccccatatttgttccat 13094498  T
Q  211 ccttcccattgcatacaaagagtatattaactttgtatttggactaac 258  Q
    ||||||||| | |||||||||||| |||||  ||||||||||| ||||    
T  13094499 ccttcccatagaatacaaagagtaaattaaagttgtatttggagtaac 13094546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 11 - 257
Target Start/End: Original strand, 13100901 - 13101146
Alignment:
Q  11 acctgtgtgtgaaacttccataatacagcagctgcaaccattttcatttgaaggaaagtaatatcttttccgagacagcttctcggacctgcattaaacg 110  Q
    |||||| |||||||||||  ||| | ||||||||| ||||| |||||||||| |||  ||||||| || || | ||| ||||| || |||| ||| || |    
T  13100901 acctgtatgtgaaacttcggtaacaaagcagctgcgaccatcttcatttgaatgaagctaatatccttacccatacaacttctaggtcctg-attgaaag 13100999  T
Q  111 ctatgaacttgtacgatggtacatgtataatttgtcctctattcgatatccatctctcgggccgaaattccaggcaatcatcaccccatatttgttccat 210  Q
    ||||||||||||| ||||||||||||||||| |||||||| |  || | ||||||||| |||  |||||||| ||| || || |||||||||||||||||    
T  13101000 ctatgaacttgtaagatggtacatgtataatgtgtcctctctctgacacccatctctcaggcttaaattccatgcagtcttctccccatatttgttccat 13101099  T
Q  211 ccttcccattgcatacaaagagtatattaactttgtatttggactaa 257  Q
    ||||||||| || ||||||||||| | |||| |||||||||||||||    
T  13101100 ccttcccatagcgtacaaagagtacaataaccttgtatttggactaa 13101146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 41 - 258
Target Start/End: Original strand, 13007130 - 13007347
Alignment:
Q  41 gctgcaaccattttcatttgaaggaaagtaatatcttttccgagacagcttctcggacctgcattaaacgctatgaacttgtacgatggtacatgtataa 140  Q
    ||||| ||||| |||||||||| |||  ||||||| || || | ||| ||||| ||||||| ||| || |||||||||||||| ||||||||||||||||    
T  13007130 gctgcgaccatcttcatttgaatgaagctaatatccttgcccatacaacttctaggacctgtattgaaagctatgaacttgtaagatggtacatgtataa 13007229  T
Q  141 tttgtcctctattcgatatccatctctcgggccgaaattccaggcaatcatcaccccatatttgttccatccttcccattgcatacaaagagtatattaa 240  Q
    | |||||||| |  || | ||||||||| |||  |||||||| ||| || || |||||||||||||||||||||||||| || ||||||||||| | |||    
T  13007230 tgtgtcctctctctgacacccatctctcaggcttaaattccatgcagtcttctccccatatttgttccatccttcccatagcgtacaaagagtacaataa 13007329  T
Q  241 ctttgtatttggactaac 258  Q
    | ||||||||||||||||    
T  13007330 ccttgtatttggactaac 13007347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 22 - 255
Target Start/End: Complemental strand, 13065494 - 13065261
Alignment:
Q  22 aaacttccataatacagcagctgcaaccattttcatttgaaggaaagtaatatcttttccgagacagcttctcggacctgcattaaacgctatgaacttg 121  Q
    ||||||||||| || ||| || ||| |||| ||||||| || ||| || |||||||| || | ||| ||||| || |||||||| || ||||||||||||    
T  13065494 aaacttccatagtatagccgcggcagccatcttcatttcaacgaaggtgatatctttacccaaacaacttcttggccctgcattgaaagctatgaacttg 13065395  T
Q  122 tacgatggtacatgtataatttgtcctctattcgatatccatctctcgggccgaaattccaggcaatcatcaccccatatttgttccatccttcccattg 221  Q
    || || |||||||||||||||||||| || || |||||||||||||| |||  |||||||| ||| || || ||||||||||  ||||||||||||||||    
T  13065394 taagacggtacatgtataatttgtccgctttttgatatccatctctcaggcttaaattccatgcagtcttctccccatattttctccatccttcccattg 13065295  T
Q  222 catacaaagagtatattaactttgtatttggact 255  Q
     ||||||| |||||| || | |||||||||||||    
T  13065294 aatacaaatagtataatatccttgtatttggact 13065261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 258
Target Start/End: Original strand, 13129728 - 13129975
Alignment:
Q  11 acctgtgtgtgaaacttccataatacagcagctgcaaccattttcatttgaaggaaagtaatatcttttccgagacagcttctcggacctgcattaaacg 110  Q
    |||||| |||||||||||  ||| | ||||||||| ||||| |||||||||| |||| ||| |||||| || | |||  |||| || ||||  || || |    
T  13129728 acctgtatgtgaaacttctgtaacaaagcagctgcgaccatcttcatttgaatgaaactaagatctttacctatacaaattctgggtcctgtgttgaaag 13129827  T
Q  111 ctatgaacttgtacgatggtacatgtataatttgtcctctattcgatatccatctctcgggccgaaattccaggcaatcatcaccccatatttgttccat 210  Q
    ||| ||||||||| ||||||||||||||||| | ||| || |  |||||||||||||| |||  |||||||| ||| || || |||||||||||||||||    
T  13129828 ctacgaacttgtaagatggtacatgtataatatctcccctctcagatatccatctctcaggcttaaattccatgcagtcttctccccatatttgttccat 13129927  T
Q  211 ccttcccattgcatacaaagagtatattaactttgtatttggactaac 258  Q
    ||||||||| | |||||||||||| || ||  ||||||||||||||||    
T  13129928 ccttcccatagaatacaaagagtaaatcaaagttgtatttggactaac 13129975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 11 - 257
Target Start/End: Original strand, 13161421 - 13161667
Alignment:
Q  11 acctgtgtgtgaaacttccataatacagcagctgcaaccattttcatttgaaggaaagtaatatcttttccgagacagcttctcggacctgcattaaacg 110  Q
    |||||| |||||||||||| ||| | ||||||||| ||||| |||||||||| |||| ||| |||||| || | |||  |||| || ||||  || || |    
T  13161421 acctgtatgtgaaacttccgtaacaaagcagctgcgaccatcttcatttgaatgaaactaagatctttacctatacaaattctgggtcctgtgttgaaag 13161520  T
Q  111 ctatgaacttgtacgatggtacatgtataatttgtcctctattcgatatccatctctcgggccgaaattccaggcaatcatcaccccatatttgttccat 210  Q
     |||||||||||| || |||||||||||||| | ||| || |  |||||||||||||| |||  |||||||| ||| || || ||||||| |||||||||    
T  13161521 atatgaacttgtaagaaggtacatgtataatatctcccctctcagatatccatctctcaggcttaaattccatgcagtcttccccccatagttgttccat 13161620  T
Q  211 ccttcccattgcatacaaagagtatattaactttgtatttggactaa 257  Q
    ||| ||||| | ||||| |||||| |||||  |||||||||||||||    
T  13161621 cctgcccatagaatacatagagtacattaaacttgtatttggactaa 13161667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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