View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6965_high_4 (Length: 412)
Name: NF6965_high_4
Description: NF6965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6965_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 5 - 396
Target Start/End: Original strand, 4322531 - 4322922
Alignment:
| Q |
5 |
aatatcgaattaatccttttatttagcagaaaaaatttgattaattcttatcaaacaagtaaaatgtacatgcaacgatgaagctttatttaattaagat |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
4322531 |
aatatcgaattaatccttttatttagcagaattttttttattaattcttatcaaacaagtaaaatgtacatgcaacgcataagctttatttaattaagat |
4322630 |
T |
|
| Q |
105 |
atatgaagaaaatatacgtgaccttatatcctctttcaatgtatttgatagcaacaagttctcctgtcttcttgtctttagccaacctagtcactccaaa |
204 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4322631 |
atatgaagaaaatatacttgaccttatatcctctttcaatgtatttgatagcaacaagttctcctgtctttttgtctttagccaacctagtcactccaaa |
4322730 |
T |
|
| Q |
205 |
gtttccagaaccaaggtccttcaatatctcgtatctttcctcctccatttcacagtccaaataatactgttcaagtgacgatccaatgataaaaatgaat |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4322731 |
gtttccagaaccaaggtccttcaatatctcgtatctttcctcctccatttcacagtccaaataatactgttcaattgacgatccaatgataaaaatgaat |
4322830 |
T |
|
| Q |
305 |
gaaaaataagtgatttagtcaaaactgaaataacattgtaatgaaaatgagaaggagaaaaatgtgaattagaaattagacaaagaaaaagt |
396 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4322831 |
aaaacataagtgatttagtcaaaactgaaataacattgtaatgaaaatgagaaggagaaaaatgtgaattagaaattagacaaagaaaaagt |
4322922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 143 - 243
Target Start/End: Complemental strand, 41124498 - 41124398
Alignment:
| Q |
143 |
atgtatttgatagcaacaagttctcctgtcttcttgtctttagccaacctagtcactccaaagtttccagaaccaaggtccttcaatatctcgtatcttt |
242 |
Q |
| |
|
|||||||||| |||||||||||| || || || ||||||||||||||||||| || ||||| |||||||||||||| ||||||||| ||| ||||||| |
|
|
| T |
41124498 |
atgtatttgagagcaacaagttccccagtatttttgtctttagccaacctagcaacaccaaaatttccagaaccaagttccttcaatggctcatatcttt |
41124399 |
T |
|
| Q |
243 |
c |
243 |
Q |
| |
|
| |
|
|
| T |
41124398 |
c |
41124398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University