View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6965_low_11 (Length: 371)
Name: NF6965_low_11
Description: NF6965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6965_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 8 - 359
Target Start/End: Complemental strand, 34629396 - 34629045
Alignment:
| Q |
8 |
tggacatcagacataaacaattaggaaccaataatgctgctggaaaaggaccaaatgnnnnnnnnnnnnntttatgctgctgtataaaatattgtggtaa |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
34629396 |
tggacatcagacataaacaattaggaaccaataatgctgctggaaaaggaccaaatgaaaaaaagaaaaatttatgctgctgtataaaatattgtggtaa |
34629297 |
T |
|
| Q |
108 |
ttttttaataacatggatagttctagtagagtttatagttatgcggctcgtgagtaacctaccaccacttctttattagttggcatttaattagttgtgt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34629296 |
ttttttaataacatggatagttctagtagagtttatagttatgcggctcgtgagtaacctaccaccacttctttattagttggcatttaattagttgtgt |
34629197 |
T |
|
| Q |
208 |
tttgatggcttttttaccactaatttcccttgtaagttgtaagtgttttctaaactctctttgagcttagttgattgtctttgtcactggaatacatttg |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34629196 |
tttgatggcttttttaccactaatttcccttgtaagttgtaagtgttttctaaaccctctttgagcttagttgattgtctttgtcactggaatacatttg |
34629097 |
T |
|
| Q |
308 |
tggagctgttattcgatatcattttgttcttaaatttgtgaagcttgatgtc |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34629096 |
tggagctgttattcgatatcattttgttcttaaatttgtgaagcttgatgtc |
34629045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University