View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6965_low_15 (Length: 335)
Name: NF6965_low_15
Description: NF6965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6965_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 13 - 318
Target Start/End: Complemental strand, 20506011 - 20505717
Alignment:
| Q |
13 |
aatatattattcaacttattacatacttacatagtaaaaacacagaatttattaaaacaagaacttaagttacataatcaagttcactagcaatgtaaaa |
112 |
Q |
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| T |
20506011 |
aatatattattcaacttattacatgcttacatagtaaaaacacagaatttatcaaaacaagaacttaagttacataatcaagttcactagcaatgtaaaa |
20505912 |
T |
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| Q |
113 |
attcaagcaaaagacttaataattccatcttcataagaattaaaggtctcagaaaatacaaaagcagaaacttgttggtccgtcaaaatcaaacgtcctc |
212 |
Q |
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| T |
20505911 |
attcaagcaacagacttaataattccatcttcataagaattaacagtctcagaaaatacaaaagcagaaatttgttggtcagtcaaaatcaaacgtcctc |
20505812 |
T |
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| Q |
213 |
caacttaaccattattataaaacccaatatttgaacaaaaactagaagatccatcaacacaaaatacaaacttataactaagaccatatttttgaatatt |
312 |
Q |
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| T |
20505811 |
caacttcaccat-----------ccaatatttgaacaaaaactagaagatccatcaacacaaaatacaaacttataactaagaccatatttttgaatgtt |
20505723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 151
Target Start/End: Complemental strand, 20476126 - 20476090
Alignment:
| Q |
115 |
tcaagcaaaagacttaataattccatcttcataagaa |
151 |
Q |
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| T |
20476126 |
tcaagcaacagacttaataattccagcttcataagaa |
20476090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 289
Target Start/End: Original strand, 13072097 - 13072191
Alignment:
| Q |
195 |
tcaaaatcaaacgtcctccaacttaaccattattataaaacccaatatttgaacaaaaactagaagatccatcaacacaaaatacaaacttataa |
289 |
Q |
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| T |
13072097 |
tcaaaatcaatcgtcctcccatctcaccaatcttataatacccaatatccgaacaattagtagtagatccattaacacaaaacacaaacttataa |
13072191 |
T |
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