View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6965_low_16 (Length: 319)
Name: NF6965_low_16
Description: NF6965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6965_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 6 - 312
Target Start/End: Complemental strand, 1256312 - 1256007
Alignment:
| Q |
6 |
actgcactgatttaacgtatcagtaagannnnnnnnaatgtgctgtgagttttcacttattgtctggaagttatttgtagacttttcttttgcatgttga |
105 |
Q |
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|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1256312 |
actgcactgatttaacgtatcagtaatattttttttaatgtgctgtgagttttcacttattgtctggaagttatttgtagacttttcttttgcatgttga |
1256213 |
T |
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| Q |
106 |
aaattggagaaattttatttcagtatttgatatttctggtgatctttgtggcttgattctgaaaagttgaaactacgatgcaaccacaattttggttgca |
205 |
Q |
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| T |
1256212 |
aaattggagaaattttatttcagtatt-gatatttctggtgatctctgtggcttgattctgaaaagttgacactacgatgcaaccacaattttggttgca |
1256114 |
T |
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| Q |
206 |
cttgatgccagtatcacattattactactgaatttggtgattgcccaaggtccaatattattagactatatgctaggaggcataagaggcgtaggacaca |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1256113 |
cttgatgccagtatcacattattactactgaatttggtgattgcccaaggtccaatattattagactatatgctaggaggcataagaggcgtaggacaca |
1256014 |
T |
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| Q |
306 |
ggttctg |
312 |
Q |
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|| |||| |
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| T |
1256013 |
ggatctg |
1256007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 6 - 312
Target Start/End: Complemental strand, 42191101 - 42190778
Alignment:
| Q |
6 |
actgcactgatttaacgtatcagtaagannnnnnnnaatgtgctgtgagttttcacttattgtctggaagttatttgtagacttttcttttgcatgttga |
105 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
42191101 |
actgcactgatttaacgtatcagtaagattttttt-aatgtgctgtgagttttcacttattgtctggaagttatttgtagagttttcttttgcatgttga |
42191003 |
T |
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| Q |
106 |
aaattggagaaattttatttcagtatttgatatttctggtgatctttgtggcttga-------------------ttctgaaaagttgaaactacgatgc |
186 |
Q |
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| T |
42191002 |
aaattggagaaattttatttcagtatt-gatatttctggtgatctctgtgtcttgagttccaaatcttacagggattctgaaaagttgaaactacgatac |
42190904 |
T |
|
| Q |
187 |
aaccacaattttggttgcacttgatgccagtatcacattattactactgaatttggtgattgcccaaggtccaatattattagactatatgctaggaggc |
286 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
42190903 |
aaccacaatttgggttgcacttgatgccagtatcacattattactagtgaatttggtgatcgcccaaggtccaatattattagactatatgctaggaggc |
42190804 |
T |
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| Q |
287 |
ataagaggcgtaggacacaggttctg |
312 |
Q |
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||||||||||||||||||||| |||| |
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| T |
42190803 |
ataagaggcgtaggacacaggatctg |
42190778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 6 - 231
Target Start/End: Complemental strand, 42191792 - 42191549
Alignment:
| Q |
6 |
actgcactgatttaacgtatcagtaagannnnnnnnaatgtgctgtgagttttcacttattgtctggaagttatttgtagacttttcttttgcatgttga |
105 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
42191792 |
actgcactgatttaacgtatcagtaagattttttttaatgtgctgtgagttttcacttattgtcgggaagttatttgtagagttttcttttgcatgttga |
42191693 |
T |
|
| Q |
106 |
aaattggagaaattttatttcagtatttgatatttctggtgatctttgtggctt-------------------gattctgaaaagttgaaactacgatgc |
186 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||| |||| |
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| T |
42191692 |
aaattggagaaattttatttcagta-ttgatatttctggtgatctctgtggcttgagttccaaatcttatagggattctgaaaagttgaaactacaatgc |
42191594 |
T |
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| Q |
187 |
aaccacaattttggttgcacttgatgccagtatcacattattact |
231 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
42191593 |
aaccacaatttgggttgcacttgatgccagtatcacattattact |
42191549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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