View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6965_low_20 (Length: 291)
Name: NF6965_low_20
Description: NF6965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6965_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 14 - 213
Target Start/End: Original strand, 39036644 - 39036843
Alignment:
| Q |
14 |
cctgtgctgtctccttgcaagattgatttgtgaggttgagaaaatgtatatatatgtagggtttaggtttaggttagatattgggcttatgaatgggcct |
113 |
Q |
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| T |
39036644 |
cctgtgctgtctccttacacgattgatatgtgaggttgagaaaatgtatatatatgtagggtttaggtttaggttagatattgggcttatgaatgggcct |
39036743 |
T |
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| Q |
114 |
atgtctaaatcaataatttcttgaacgtggctttcacaccaccttaattaatattaacaatgaaataaaccctttactttacacgtacaaaacataaaaa |
213 |
Q |
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| T |
39036744 |
atgtctaaatcaataatttcttgaacgtggctttcacaccaccttaattaatattaacaatgaaataaaccctttactttacccgtacaaaacataaaaa |
39036843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 277
Target Start/End: Original strand, 39036918 - 39036979
Alignment:
| Q |
216 |
tatacaacgttcgaagaacttacnnnnnnnnttataaaaccataaacttcaacccacaggtt |
277 |
Q |
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| T |
39036918 |
tatacaactttcgaagaacttacaaaaaaaattataaaaccataaacttcaacccacaggtt |
39036979 |
T |
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