View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6965_low_22 (Length: 274)
Name: NF6965_low_22
Description: NF6965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6965_low_22 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 264
Target Start/End: Complemental strand, 29991016 - 29990770
Alignment:
| Q |
18 |
caatcaaagccaatccttcttgaaccaacttcttcaaatcaaattgctcatacttacctctacccaatatcatcttatacacaatatcttcaataagatt |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
29991016 |
caatcaaagccaatccttcttgaaccaacttcttcaaatcaaattgctcatacttacctctacccaatatcatcttatacacaatatcttcaataacatt |
29990917 |
T |
|
| Q |
118 |
ctctacaatctcactaacattcacaacctcacctaccaaagaagcttttttcaaagtgttaaccaaaatacccaactcctctgttctaataggacccgac |
217 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29990916 |
ctctacaatctcactgacattcacaacctcacctaccaaagaagcttttttcaaagtgttaaccaaaatacccaactcctctgttctaataggacccgac |
29990817 |
T |
|
| Q |
218 |
ttctcaacttttgaagcactaagaagtttcaaagtgcacagtttctt |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
29990816 |
ttctcaacttttgaagcactaagaagtttcaaagtgcagagtttctt |
29990770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 20 - 255
Target Start/End: Complemental strand, 29999718 - 29999483
Alignment:
| Q |
20 |
atcaaagccaatccttcttgaaccaacttcttcaaatcaaattgctcatacttacctctacccaatatcatcttatacacaatatcttcaataagattct |
119 |
Q |
| |
|
||||||| ||||| |||| || || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
29999718 |
atcaaagttaatccatctttaatcatcttcttcaagtcaaattgctcatacttacctctacccaatatcatcttatacacaatatcctcaataagattct |
29999619 |
T |
|
| Q |
120 |
ctacaatctcactaacattcacaacctcacctaccaaagaagcttttttcaaagtgttaaccaaaatacccaactcctctgttctaataggacccgactt |
219 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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|
| T |
29999618 |
cgacaatctcactaacattcacaacctcacctaccaaagaagctttcttcaaagtgttaaccaaaacacccaactcctcttttctaataggacccgactt |
29999519 |
T |
|
| Q |
220 |
ctcaacttttgaagcactaagaagtttcaaagtgca |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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|
| T |
29999518 |
ctcaacttttgaagcactaagaagtttcaaagtgca |
29999483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 30044996 - 30045233
Alignment:
| Q |
18 |
caatcaaagccaatccttcttgaaccaacttcttcaaatcaaattgctcatacttacctctacccaatatcatcttatacacaatatcttcaataagatt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| | ||| || |||| |||||||||||||||||| || ||||| |
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|
| T |
30044996 |
caatcaaagccaatccttcttgaaccaaactcttcaagtcaaattgctcatacttactccgaccaaacatcaacttatacacaatatcttctattagatt |
30045095 |
T |
|
| Q |
118 |
ctctacaatctcactaacattcacaacctcacctaccaaagaagcttttttcaaagtgttaaccaaaatacccaactcctctgttctaataggacccgac |
217 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||| |||||||||| ||||||||||||| ||| |
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|
| T |
30045096 |
ctctacaacctcactaacattcacaacctcaccaaccaaagcagctttcttcaaagtgttaaccaaaatactcaactcctcttttctaataggaccagac |
30045195 |
T |
|
| Q |
218 |
ttctcaacttttgaagcactaagaagtttcaaagtgca |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30045196 |
atctcaacttttgaagcactaagaagtttcaaagtgca |
30045233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 25 - 264
Target Start/End: Complemental strand, 29963404 - 29963165
Alignment:
| Q |
25 |
agccaatccttcttgaaccaacttcttcaaatcaaattgctcatacttacctctacccaatatcatcttatacacaatatcttcaataagattctctaca |
124 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29963404 |
agccattccttcttgaaccaacttctttaaatcaaattgctcatacttacccctacccaatatcatcttatacacaatatcttcaataagattctctaca |
29963305 |
T |
|
| Q |
125 |
atctcactaacattcacaacctcacctaccaaagaagcttttttcaaagtgttaaccaaaatacccaactcctctgttctaataggacccgacttctcaa |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||| | || | |||||||||| | ||||||||| | ||||||||||| || |||||| |
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|
| T |
29963304 |
atctcactaacattcacaacctcacctaccaaaacaactttctctaatgacttaaccaaaacatccaactccttcttcctaataggaccaaacatctcaa |
29963205 |
T |
|
| Q |
225 |
cttttgaagcactaagaagtttcaaagtgcacagtttctt |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
29963204 |
cttttgaagcactaagaagtttcaaagtgcaaagtttctt |
29963165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 25 - 264
Target Start/End: Original strand, 30011394 - 30011633
Alignment:
| Q |
25 |
agccaatccttcttgaaccaacttcttcaaatcaaattgctcatacttacctctacccaatatcatcttatacacaatatcttcaataagattctctaca |
124 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30011394 |
agccattccttcttgaaccaacttctttaaatcaaattgctcatacttacccctacccaatatcatcttatacacaatatcttcaataagattctctaca |
30011493 |
T |
|
| Q |
125 |
atctcactaacattcacaacctcacctaccaaagaagcttttttcaaagtgttaaccaaaatacccaactcctctgttctaataggacccgacttctcaa |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||| | || | |||||||||| | ||||||||| | ||||||||||| || |||||| |
|
|
| T |
30011494 |
atctcactaacattcacaacctcacctaccaaaacaactttctctaatgacttaaccaaaacatccaactccttcttcctaataggaccaaacatctcaa |
30011593 |
T |
|
| Q |
225 |
cttttgaagcactaagaagtttcaaagtgcacagtttctt |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
30011594 |
cttttgaagcactaagaagtttcaaagtgcaaagtttctt |
30011633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 30070826 - 30071063
Alignment:
| Q |
18 |
caatcaaagccaatccttcttgaaccaacttcttcaaatcaaattgctcatacttacctctacccaatatcatcttatacacaatatcttcaataagatt |
117 |
Q |
| |
|
|||||||| ||||| ||| ||||||||| || ||||| ||||||||||||||||||| | || || |||| |||||||||||||||||| || ||||| |
|
|
| T |
30070826 |
caatcaaaaccaattcttgttgaaccaaatttttcaagtcaaattgctcatacttactccgtccaaacatcaacttatacacaatatcttctattagatt |
30070925 |
T |
|
| Q |
118 |
ctctacaatctcactaacattcacaacctcacctaccaaagaagcttttttcaaagtgttaaccaaaatacccaactcctctgttctaataggacccgac |
217 |
Q |
| |
|
|||||| | |||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||| |||||||||| ||||||||||||| ||| |
|
|
| T |
30070926 |
ctctactacctcactaacattcacaacctcaccaaccaaagcagctttcttcaaagtgttaaccaaaatactcaactcctcttttctaataggaccagac |
30071025 |
T |
|
| Q |
218 |
ttctcaacttttgaagcactaagaagtttcaaagtgca |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30071026 |
atctcaacttttgaagcactaagaagtttcaaagtgca |
30071063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 20 - 255
Target Start/End: Complemental strand, 30006156 - 30005921
Alignment:
| Q |
20 |
atcaaagccaatccttcttgaaccaacttcttcaaatcaaattgctcatacttacctctacccaatatcatcttatacacaatatcttcaataagattct |
119 |
Q |
| |
|
|||||||||| | ||||| |||| ||||| |||| ||||||||||||||||||| | ||| || |||||||||||||||||||| ||||||||||||| |
|
|
| T |
30006156 |
atcaaagccattgcttctagaactaacttattcatgtcaaattgctcatacttactccgaccaaacatcatcttatacacaatatcctcaataagattct |
30006057 |
T |
|
| Q |
120 |
ctacaatctcactaacattcacaacctcacctaccaaagaagcttttttcaaagtgttaaccaaaatacccaactcctctgttctaataggacccgactt |
219 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||| | |||||| | ||||| ||||||||| | |||||| ||| | ||||||||||| || | |
|
|
| T |
30006056 |
ctacaacctcactaacattcacaacctcaccctccaaggcagctttctccaaagatataaccaaaacatccaacttctccttcctaataggaccaaacat |
30005957 |
T |
|
| Q |
220 |
ctcaacttttgaagcactaagaagtttcaaagtgca |
255 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |
|
|
| T |
30005956 |
ctcaacttttgaagcactaaaaagtttcaaagtgca |
30005921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 22 - 262
Target Start/End: Complemental strand, 29952302 - 29952062
Alignment:
| Q |
22 |
caaagccaatccttcttgaaccaacttcttcaaatcaaattgctcatacttacctctacccaatatcatcttatacacaatatcttcaataagattctct |
121 |
Q |
| |
|
|||||||||| | |||||||||| | |||| || |||||||| |||||||| | | ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
29952302 |
caaagccaatacgtcttgaaccaccctctttaagtcaaattgatcatacttgctccgacccaatatcatcttatacacaatatcctcaataagattctct |
29952203 |
T |
|
| Q |
122 |
acaatctcactaacattcacaacctcacctaccaaagaagcttttttcaaagtgttaaccaaaatacccaactcctctgttctaataggacccgacttct |
221 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||| |||||| | ||| | |||| ||||| | |||||| || | ||||||| ||| || ||| |
|
|
| T |
29952202 |
acaacctcactaacattcacaacctcactcaccaaagcagctttctccaatgacttaatcaaaacatccaacttttccttcctaatagaaccaaacatct |
29952103 |
T |
|
| Q |
222 |
caacttttgaagcactaagaagtttcaaagtgcacagtttc |
262 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
29952102 |
caacttttgaagcactaagaagttttaaagtgcaaagtttc |
29952062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 29944185 - 29943957
Alignment:
| Q |
18 |
caatcaaagccaatccttcttgaaccaacttcttcaaatcaaattgctcatacttacctctacccaatatcatcttatacacaatatcttcaataagatt |
117 |
Q |
| |
|
|||||||||||| | | |||||||||||| |||| | |||| || |||||||||| | |||||| | |||||||||||||||||| || |||| ||| |
|
|
| T |
29944185 |
caatcaaagccattacgtcttgaaccaacctctttaggtcaatatgatcatacttactccgacccaacaccatcttatacacaatatcctctataacatt |
29944086 |
T |
|
| Q |
118 |
ctctacaatctcactaacattcacaacctcacctaccaaagaagcttttttcaaagtgttaaccaaaatacccaactcctctgttctaataggacccgac |
217 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||| || |||||| | ||||| |||||||||| | |||||| ||| | ||||||||||| || |
|
|
| T |
29944085 |
ctctacagcctcactaacattcacaacctcaccctccagagcagctttctccaaagatttaaccaaaacatccaacttctccttcctaataggaccaaac |
29943986 |
T |
|
| Q |
218 |
ttctcaacttttgaagcactaagaagttt |
246 |
Q |
| |
|
|||||||||| ||||||||||||||||| |
|
|
| T |
29943985 |
atctcaactttcgaagcactaagaagttt |
29943957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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