View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6965_low_23 (Length: 259)

Name: NF6965_low_23
Description: NF6965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6965_low_23
NF6965_low_23
[»] chr2 (24 HSPs)
chr2 (1-238)||(40308102-40308339)
chr2 (1-235)||(22484884-22485118)
chr2 (1-238)||(6496937-6497173)
chr2 (1-242)||(6124782-6125029)
chr2 (1-242)||(4169782-4170023)
chr2 (105-238)||(7807121-7807254)
chr2 (20-103)||(45159093-45159176)
chr2 (160-233)||(12819577-12819651)
chr2 (173-238)||(20537114-20537180)
chr2 (160-220)||(5371337-5371398)
chr2 (160-234)||(31235967-31236042)
chr2 (162-228)||(24585777-24585845)
chr2 (160-228)||(45158963-45159032)
chr2 (162-228)||(1005754-1005821)
chr2 (160-222)||(2319537-2319600)
chr2 (170-228)||(14824389-14824448)
chr2 (163-228)||(4355555-4355621)
chr2 (160-237)||(18301357-18301435)
chr2 (162-222)||(4562031-4562092)
chr2 (161-220)||(35342580-35342640)
chr2 (161-228)||(28746470-28746538)
chr2 (170-228)||(8482726-8482785)
chr2 (160-234)||(34146442-34146517)
chr2 (1-32)||(38601860-38601891)
[»] chr5 (36 HSPs)
chr5 (1-240)||(39689993-39690232)
chr5 (1-238)||(9792913-9793150)
chr5 (5-238)||(1639054-1639286)
chr5 (1-236)||(33830378-33830611)
chr5 (1-235)||(26794269-26794494)
chr5 (3-201)||(12852729-12852927)
chr5 (1-78)||(32707325-32707402)
chr5 (1-103)||(9729549-9729649)
chr5 (160-238)||(10657220-10657299)
chr5 (25-103)||(30777327-30777405)
chr5 (20-103)||(6242960-6243043)
chr5 (20-103)||(11907409-11907492)
chr5 (160-234)||(3701326-3701401)
chr5 (160-222)||(22738099-22738162)
chr5 (160-234)||(26691879-26691954)
chr5 (160-234)||(26961611-26961686)
chr5 (162-222)||(1795635-1795696)
chr5 (170-234)||(21251734-21251799)
chr5 (162-222)||(26716515-26716576)
chr5 (162-222)||(26986255-26986316)
chr5 (160-234)||(17138035-17138110)
chr5 (162-228)||(25749848-25749915)
chr5 (162-228)||(27938401-27938468)
chr5 (162-222)||(14836574-14836635)
chr5 (160-228)||(27085611-27085680)
chr5 (162-222)||(43357574-43357635)
chr5 (160-238)||(5985742-5985820)
chr5 (170-228)||(7629296-7629355)
chr5 (160-234)||(15066453-15066528)
chr5 (161-202)||(18001780-18001821)
chr5 (173-228)||(30284394-30284450)
chr5 (160-222)||(11907553-11907616)
chr5 (170-222)||(3934602-3934655)
chr5 (160-201)||(5612256-5612297)
chr5 (161-201)||(34032625-34032665)
chr5 (162-202)||(35746157-35746197)
[»] chr1 (35 HSPs)
chr1 (1-240)||(28948471-28948710)
chr1 (1-238)||(6916128-6916365)
chr1 (1-238)||(38331054-38331291)
chr1 (1-237)||(52894968-52895204)
chr1 (1-238)||(8132787-8133024)
chr1 (1-238)||(5984792-5985028)
chr1 (1-242)||(25257223-25257462)
chr1 (1-234)||(30324326-30324557)
chr1 (1-244)||(3427455-3427704)
chr1 (105-238)||(36367444-36367577)
chr1 (105-238)||(37104359-37104492)
chr1 (160-238)||(36363320-36363398)
chr1 (160-242)||(28658665-28658746)
chr1 (160-238)||(43190019-43190098)
chr1 (1-78)||(1043779-1043855)
chr1 (160-228)||(24851732-24851801)
chr1 (160-233)||(14334533-14334607)
chr1 (160-233)||(31653084-31653158)
chr1 (14-78)||(1036886-1036949)
chr1 (160-237)||(13012654-13012732)
chr1 (162-228)||(9528653-9528720)
chr1 (160-234)||(47654926-47655001)
chr1 (165-228)||(9781887-9781951)
chr1 (161-220)||(36551647-36551707)
chr1 (162-228)||(34096362-34096429)
chr1 (1-35)||(28658775-28658809)
chr1 (162-222)||(34432230-34432291)
chr1 (170-221)||(10763903-10763955)
chr1 (161-201)||(24589938-24589978)
chr1 (171-234)||(37922465-37922529)
chr1 (170-228)||(10822644-10822703)
chr1 (160-233)||(37346623-37346698)
chr1 (160-201)||(3708101-3708142)
chr1 (170-222)||(29168197-29168250)
chr1 (162-222)||(29862039-29862100)
[»] chr6 (21 HSPs)
chr6 (1-242)||(7188039-7188281)
chr6 (1-238)||(1036080-1036317)
chr6 (1-239)||(8357497-8357735)
chr6 (105-238)||(31195615-31195748)
chr6 (4-103)||(22989026-22989125)
chr6 (4-103)||(23799271-23799370)
chr6 (160-234)||(10894300-10894375)
chr6 (160-238)||(31740479-31740558)
chr6 (25-103)||(3212692-3212770)
chr6 (162-222)||(19128395-19128456)
chr6 (160-233)||(7255183-7255258)
chr6 (162-222)||(234551-234612)
chr6 (170-218)||(22988923-22988972)
chr6 (170-218)||(23799424-23799473)
chr6 (20-77)||(32018222-32018279)
chr6 (160-218)||(32130342-32130401)
chr6 (173-234)||(6707821-6707883)
chr6 (160-202)||(13061188-13061230)
chr6 (162-222)||(27084216-27084277)
chr6 (160-228)||(32018358-32018427)
chr6 (160-201)||(26327557-26327598)
[»] chr8 (30 HSPs)
chr8 (1-241)||(45216483-45216723)
chr8 (1-238)||(4246544-4246781)
chr8 (1-238)||(5540037-5540274)
chr8 (1-238)||(34900635-34900872)
chr8 (1-242)||(12579798-12580038)
chr8 (1-238)||(36484040-36484276)
chr8 (7-235)||(28875834-28876062)
chr8 (1-238)||(37669185-37669421)
chr8 (1-238)||(43770970-43771217)
chr8 (103-238)||(32760073-32760207)
chr8 (105-238)||(22201084-22201217)
chr8 (89-242)||(32638476-32638628)
chr8 (160-238)||(6028865-6028944)
chr8 (160-238)||(32877830-32877909)
chr8 (20-103)||(8171023-8171106)
chr8 (20-103)||(40412661-40412744)
chr8 (160-233)||(19436627-19436701)
chr8 (160-233)||(19572776-19572850)
chr8 (1-49)||(2872440-2872488)
chr8 (160-233)||(25022529-25022603)
chr8 (160-228)||(27108982-27109051)
chr8 (162-222)||(3892206-3892267)
chr8 (68-113)||(32638631-32638676)
chr8 (160-234)||(8170887-8170962)
chr8 (160-233)||(19947644-19947718)
chr8 (160-228)||(40412805-40412874)
chr8 (160-201)||(42949444-42949485)
chr8 (160-222)||(20182629-20182692)
chr8 (170-230)||(5818138-5818199)
chr8 (162-199)||(37372502-37372539)
[»] chr4 (32 HSPs)
chr4 (1-238)||(8063361-8063598)
chr4 (1-242)||(53322957-53323197)
chr4 (1-238)||(3402838-3403075)
chr4 (1-242)||(31226955-31227198)
chr4 (1-242)||(14795624-14795865)
chr4 (4-242)||(41146225-41146462)
chr4 (1-242)||(52572807-52573043)
chr4 (105-237)||(38492027-38492159)
chr4 (1-78)||(52122363-52122440)
chr4 (160-238)||(28377272-28377351)
chr4 (20-103)||(24784490-24784573)
chr4 (25-103)||(52721477-52721555)
chr4 (181-242)||(5325279-5325340)
chr4 (160-233)||(5835205-5835279)
chr4 (32-100)||(39957818-39957886)
chr4 (162-228)||(36511742-36511809)
chr4 (161-222)||(3109098-3109160)
chr4 (161-222)||(24793524-24793586)
chr4 (161-228)||(44521833-44521901)
chr4 (170-228)||(1177227-1177286)
chr4 (162-228)||(31946036-31946102)
chr4 (160-222)||(39957950-39958013)
chr4 (170-228)||(51859045-51859104)
chr4 (160-234)||(52721616-52721691)
chr4 (160-234)||(55900929-55901004)
chr4 (161-222)||(36943932-36943994)
chr4 (160-228)||(24784634-24784703)
chr4 (160-228)||(24823563-24823632)
chr4 (161-222)||(17892511-17892573)
chr4 (181-234)||(49470559-49470613)
chr4 (173-228)||(47607354-47607410)
chr4 (5-61)||(54433658-54433714)
[»] chr3 (41 HSPs)
chr3 (1-242)||(52505084-52505324)
chr3 (1-238)||(1678945-1679182)
chr3 (1-242)||(48123441-48123682)
chr3 (1-242)||(25936339-25936579)
chr3 (1-242)||(45532323-45532563)
chr3 (1-238)||(28705354-28705594)
chr3 (1-235)||(10224427-10224652)
chr3 (65-238)||(22610541-22610713)
chr3 (105-238)||(37996555-37996688)
chr3 (105-238)||(7327945-7328078)
chr3 (20-103)||(2567186-2567269)
chr3 (160-234)||(1528809-1528879)
chr3 (20-103)||(21006280-21006363)
chr3 (20-103)||(52684445-52684528)
chr3 (160-233)||(22311105-22311179)
chr3 (160-233)||(50287015-50287089)
chr3 (160-222)||(30787354-30787417)
chr3 (160-233)||(35390125-35390199)
chr3 (160-222)||(13352988-13353051)
chr3 (160-234)||(20509937-20510012)
chr3 (105-151)||(1528733-1528779)
chr3 (169-222)||(48334154-48334208)
chr3 (162-222)||(19349419-19349480)
chr3 (170-222)||(48333212-48333265)
chr3 (160-238)||(52121537-52121616)
chr3 (160-222)||(52684589-52684652)
chr3 (160-233)||(28882348-28882422)
chr3 (161-234)||(28968774-28968848)
chr3 (161-234)||(47642269-47642343)
chr3 (160-228)||(21006150-21006219)
chr3 (162-222)||(22289536-22289597)
chr3 (170-222)||(42229914-42229967)
chr3 (3-53)||(50522965-50523015)
chr3 (160-201)||(19421678-19421719)
chr3 (160-220)||(19878897-19878958)
chr3 (160-201)||(21157543-21157584)
chr3 (162-222)||(29916034-29916095)
chr3 (162-222)||(29965187-29965248)
chr3 (181-228)||(25701046-25701094)
chr3 (170-221)||(28548296-28548348)
chr3 (162-202)||(41741908-41741948)
[»] chr7 (38 HSPs)
chr7 (1-238)||(40096274-40096511)
chr7 (1-242)||(11830305-11830545)
chr7 (1-242)||(36661081-36661321)
chr7 (1-242)||(27397379-27397618)
chr7 (105-238)||(48163648-48163781)
chr7 (105-238)||(27354161-27354294)
chr7 (105-238)||(27555111-27555244)
chr7 (105-238)||(16851023-16851156)
chr7 (4-103)||(11058547-11058646)
chr7 (56-136)||(47238408-47238488)
chr7 (160-238)||(1042845-1042924)
chr7 (160-238)||(26773358-26773437)
chr7 (25-103)||(9283778-9283856)
chr7 (25-103)||(25969627-25969705)
chr7 (160-234)||(23078890-23078965)
chr7 (162-228)||(23969935-23970002)
chr7 (162-228)||(48153784-48153851)
chr7 (160-233)||(16564023-16564097)
chr7 (160-233)||(16601565-16601639)
chr7 (25-103)||(47720005-47720083)
chr7 (160-242)||(47238012-47238094)
chr7 (161-234)||(1400049-1400123)
chr7 (25-103)||(9250227-9250304)
chr7 (162-222)||(26973296-26973357)
chr7 (160-238)||(8029071-8029150)
chr7 (160-222)||(19820791-19820854)
chr7 (160-234)||(33454329-33454404)
chr7 (160-237)||(19510887-19510965)
chr7 (163-228)||(35160124-35160194)
chr7 (174-233)||(4291946-4292006)
chr7 (170-228)||(21409637-21409696)
chr7 (160-234)||(36763572-36763651)
chr7 (161-222)||(15878217-15878279)
chr7 (160-228)||(38064929-38064999)
chr7 (162-222)||(36413609-36413669)
chr7 (162-201)||(554727-554766)
chr7 (6-61)||(25557733-25557788)
chr7 (160-222)||(44269979-44270042)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-242)||(43866-44107)
[»] scaffold0112 (1 HSPs)
scaffold0112 (1-227)||(41360-41585)
[»] scaffold0037 (1 HSPs)
scaffold0037 (1-197)||(27092-27287)
[»] scaffold0640 (1 HSPs)
scaffold0640 (1-78)||(7581-7658)
[»] scaffold0177 (1 HSPs)
scaffold0177 (1-78)||(25043-25120)
[»] scaffold0250 (1 HSPs)
scaffold0250 (160-233)||(5906-5980)


Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 40308339 - 40308102
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagagga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  40308339 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgggaatggaggagagga 40308240  T
Q  101 gatgtaaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcacta 200  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||        |||||||||||||||||||||||||||||||||||||||||    
T  40308239 gatgtaaacgttagttacttgttagtgttaactcttagtactgatgtgttctttttttggatatagtgattcttttttggatcgatatagtatagcacta 40308140  T
Q  201 ataagttccttttggatatagtgtagcattgatgtata 238  Q
    | ||||||||||||||||||||||||||||||||||||    
T  40308139 acaagttccttttggatatagtgtagcattgatgtata 40308102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 22484884 - 22485118
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagagga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  22484884 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgggaatggaggagagga 22484983  T
Q  101 gatgtaaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcacta 200  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||        |||||||||||||||||||||||||||||||||||||||||    
T  22484984 gatgtaaacgttagttacttgttagtgttaactcttagtactgatgtgttctttttttggatatagtgattcttttttggatcgatatagtatagcacta 22485083  T
Q  201 ataagttccttttggatatagtgtagcattgatgt 235  Q
    | |||||||||||||||||||||||||||||||||    
T  22485084 acaagttccttttggatatagtgtagcattgatgt 22485118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 6497173 - 6496937
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagagga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  6497173 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagctgatttgtatcttgatgatgggaatggaggagagga 6497074  T
Q  101 gatgtaaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcacta 200  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||        ||||||||| |||||||||||||||||||||||||| ||||    
T  6497073 gatgtaaacgttagttacttgttagtgttaactcttagtactgatgtgttc-ttttttggatatagtgcttcttttttggatcgatatagtataggacta 6496975  T
Q  201 ataagttccttttggatatagtgtagcattgatgtata 238  Q
    | ||||||||||||||||||||||||||||||||||||    
T  6496974 acaagttccttttggatatagtgtagcattgatgtata 6496937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 6124782 - 6125029
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagagga 100  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6124782 aaccacttgatgatgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgggaatggaggagagga 6124881  T
Q  101 gatgtaaacgttagttacttgttagtgttaactcttggtactgatgtgttc------nnnnnnnngatatagtgattcttttttggatcgatatagtata 194  Q
    ||||||||||||||||||||||| |||||||||||| ||| ||||||||||              |||||||||||||||||||||||||||||||||||    
T  6124882 gatgtaaacgttagttacttgtttgtgttaactcttagtagtgatgtgttctttttttttttttggatatagtgattcttttttggatcgatatagtata 6124981  T
Q  195 gcactaataagttccttttggatatagtgtagcattgatgtatagcac 242  Q
     |||||| |||||| ||||  |||||||||||||||||||||||||||    
T  6124982 acactaacaagttctttttatatatagtgtagcattgatgtatagcac 6125029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 4170023 - 4169782
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagagga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||  ||||||||||||||    
T  4170023 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccagatttggaagctgatttgtatcttgatgatggaaatggaggagagga 4169924  T
Q  101 gatgtaaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcacta 200  Q
    |||  ||| ||||||||||||||||||||||||||| ||||||||||||||        |||||| || ||| ||||||||||||||||||||| |||||    
T  4169923 gattgaaatgttagttacttgttagtgttaactcttagtactgatgtgttctttttttggatataatgcttcatttttggatcgatatagtataacacta 4169824  T
Q  201 ataagttccttttggatatagtgtagcattgatgtatagcac 242  Q
    | ||||||||||| |||||||| |||||||| ||||||||||    
T  4169823 acaagttcctttttgatatagtttagcattggtgtatagcac 4169782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 105 - 238
Target Start/End: Complemental strand, 7807254 - 7807121
Alignment:
Q  105 taaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcactaataa 204  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||        ||||||||||||||||||||||||||||||||||| |||||| ||    
T  7807254 taaacgttagttacttgttagtgttaactcttagtactgatgtgttctttttttggatatagtgattcttttttggatcgatatagtataacactaacaa 7807155  T
Q  205 gttccttttggatatagtgtagcattgatgtata 238  Q
     ||||||||| |||||||||||||||||||||||    
T  7807154 attccttttgaatatagtgtagcattgatgtata 7807121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 45159176 - 45159093
Alignment:
Q  20 aattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagaggagat 103  Q
    ||||||||||| ||| ||||||||||||||||| ||||||||||||| ||||||||||| |||||  |||||||||||||||||    
T  45159176 aattgagttagtagaattgtctttggatgaaccagatttggaagttggtttgtatcttgttgatggaaatggaggagaggagat 45159093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 160 - 233
Target Start/End: Original strand, 12819577 - 12819651
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagcattgat 233  Q
    ||||||||| |||||||||||||||||||||||||||| ||| ||  ||||||||||||||||| ||||||||||    
T  12819577 gatatagtgcttcttttttggatcgatatagtatagcattaacaatattccttttggatatagtatagcattgat 12819651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 173 - 238
Target Start/End: Original strand, 20537114 - 20537180
Alignment:
Q  173 ttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagcattgatgtata 238  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||| || ||||||||||||    
T  20537114 ttttttggatcgatatagtatagcactaacaatgttccttttggatatagtataacattgatgtata 20537180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 160 - 220
Target Start/End: Original strand, 5371337 - 5371398
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatata 220  Q
    ||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  5371337 gatatagtgcttcttttttggatcgatatagtatagcactaacaatgttccttttggatata 5371398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 31236042 - 31235967
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagcattgatg 234  Q
    ||||||||| ||||||||| ||||||||||||||| |||||| || |||||||||||||||||| || ||||||||    
T  31236042 gatatagtgcttcttttttagatcgatatagtataacactaacaatgttccttttggatatagtatatcattgatg 31235967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 162 - 228
Target Start/End: Original strand, 24585777 - 24585845
Alignment:
Q  162 tatagtgattcttttttggatcgatatagtatagcactaataa--gttccttttggatatagtgtagca 228  Q
    |||||||||||||||||||||||||||||||||||||||| ||   ||| ||||||||||||| |||||    
T  24585777 tatagtgattcttttttggatcgatatagtatagcactaacaatgtttctttttggatatagtatagca 24585845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 160 - 228
Target Start/End: Complemental strand, 45159032 - 45158963
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagca 228  Q
    ||||||||| ||||||||| |||||||||||||||||||||| || |||| ||||||||||||| |||||    
T  45159032 gatatagtgcttcttttttagatcgatatagtatagcactaaaaatgttctttttggatatagtatagca 45158963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 228
Target Start/End: Original strand, 1005754 - 1005821
Alignment:
Q  162 tatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagca 228  Q
    ||||||| ||||||||||||||||||||||||| |||||| ||  ||||||||||||||||| |||||    
T  1005754 tatagtgtttcttttttggatcgatatagtataacactaacaatattccttttggatatagtatagca 1005821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 2319537 - 2319600
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagt 222  Q
    ||||||||| ||||||||||||| ||||||||||| |||||| || ||||||||||||||||||    
T  2319537 gatatagtgcttcttttttggattgatatagtataacactaacaatgttccttttggatatagt 2319600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 14824389 - 14824448
Alignment:
Q  170 ttcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagca 228  Q
    |||||||||||||||||||||||||||||||| || |||| ||||||||||||| |||||    
T  14824389 ttcttttttggatcgatatagtatagcactaacaatgttctttttggatatagtatagca 14824448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 4355555 - 4355621
Alignment:
Q  163 atagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagca 228  Q
    |||||| ||||||||||||||||||||||||| |||||| || ||| |||||||||||||| |||||    
T  4355555 atagtgcttcttttttggatcgatatagtataacactaacaatgtttcttttggatatagtatagca 4355621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 237
Target Start/End: Original strand, 18301357 - 18301435
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagcattgatgtat 237  Q
    |||| |||| |||||||||||||||||||| ||||||||||  || |||||||||||||||| | || |||||||||||    
T  18301357 gatacagtgcttcttttttggatcgatataatatagcactagcaatgttccttttggatataatataacattgatgtat 18301435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 4562031 - 4562092
Alignment:
Q  162 tatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagt 222  Q
    ||||||| ||||||||||||| ||||||||||| |||||| || ||||||||||||||||||    
T  4562031 tatagtgcttcttttttggattgatatagtatatcactaacaatgttccttttggatatagt 4562092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 220
Target Start/End: Original strand, 35342580 - 35342640
Alignment:
Q  161 atatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatata 220  Q
    |||||||| ||||||||| ||||||||||||||| |||||| || ||||||||||||||||    
T  35342580 atatagtgtttcttttttagatcgatatagtataacactaacaatgttccttttggatata 35342640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 228
Target Start/End: Complemental strand, 28746538 - 28746470
Alignment:
Q  161 atatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagca 228  Q
    |||||||  ||||||||||||||||||||||||| || ||| || ||| |||||||||||||| |||||    
T  28746538 atatagttcttcttttttggatcgatatagtataacaataacaatgtttcttttggatatagtatagca 28746470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 8482785 - 8482726
Alignment:
Q  170 ttcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagca 228  Q
    |||||||||||||||||||| |||| || ||| || |||||||||||||||||| |||||    
T  8482785 ttcttttttggatcgatataatataacattaacaatgttccttttggatatagtatagca 8482726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 34146442 - 34146517
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaata-agttccttttggatatagtgtagcattgatg 234  Q
    |||||| || || |||||| ||| |||||||||||||||||| |  |||||||||||||||||| || ||||||||    
T  34146442 gatataatgcttattttttagattgatatagtatagcactaacagtgttccttttggatatagtataacattgatg 34146517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 38601891 - 38601860
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagca 32  Q
    ||||||||||||||||||||||||||||||||    
T  38601891 aaccgcttgatggtgttggaattgagttagca 38601860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 36)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 39690232 - 39689993
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagagga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  39690232 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaatcggatttggaagttgatttgtatcttgatgatgagaatggatgagagga 39690133  T
Q  101 gatgtaaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcacta 200  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||        ||||||||||||||||||||||||||||||||||| |||||    
T  39690132 gatgtaaacgttagttacttgttagtgttaactcttagtactgatgtgttctttttttggatatagtgattcttttttggatcgatatagtataacacta 39690033  T
Q  201 ataagttccttttggatatagtgtagcattgatgtatagc 240  Q
    | ||||||||||||||||||||||||||||||||||||||    
T  39690032 acaagttccttttggatatagtgtagcattgatgtatagc 39689993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 9792913 - 9793150
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagagga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9792913 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatctgtatcttgatgatgagaatggaggagagga 9793012  T
Q  101 gatgtaaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcacta 200  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||||||        ||||||||||||||||||||||||||||||||||| |||||    
T  9793013 gatgtaaacgtcagttacttgttagtgttaactcttagtactgatgtgttctttttttggatatagtgattcttttttggatcgatatagtatatcacta 9793112  T
Q  201 ataagttccttttggatatagtgtagcattgatgtata 238  Q
    | |||||| |||||||||||||||||||||||||||||    
T  9793113 acaagttcattttggatatagtgtagcattgatgtata 9793150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 5 - 238
Target Start/End: Complemental strand, 1639286 - 1639054
Alignment:
Q  5 gcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagaggagatg 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||    
T  1639286 gcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttgcaagctgatttgtatcttgatgatgggaatggaggagaggagatg 1639187  T
Q  105 taaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcactaataa 204  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||        ||||||||| |||||||||||||||||||| ||||||||||| ||    
T  1639186 taaacgttagttacttgttagtgttaactcttagtactgatgtgttc-tttttaggatatagtgcttcttttttggatcgatataatatagcactaacaa 1639088  T
Q  205 gttccttttggatatagtgtagcattgatgtata 238  Q
    |||| ||||||||||| |||||||||||||||||    
T  1639087 gttcattttggatataatgtagcattgatgtata 1639054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 33830378 - 33830611
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagagga 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  33830378 aaccgcttgatggtgttggaattgagttagcagagctgtctttggatgaaccggatttgaaagttgatttgtatcttgatgatgggaatggaggagagga 33830477  T
Q  101 gatgtaaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcacta 200  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||        |||||||||||| |||||||||||||||||||||| |||||    
T  33830478 gatgtaaacgttagttacttgttagtgttaactcttagtactgatgtgttctttttttggatatagtgatt-ttttttggatcgatatagtataacacta 33830576  T
Q  201 ataagttccttttggatatagtgtagcattgatgta 236  Q
    | |||||||||||||||  | |||||||||||||||    
T  33830577 acaagttccttttggatcga-tgtagcattgatgta 33830611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 26794494 - 26794269
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagagga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||    
T  26794494 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccagatttggaagttgatttgtatcttgatgatgggaatggaggagaaga 26794395  T
Q  101 gatgtaaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcacta 200  Q
    |||||||||||||||||||||||||||||||||||| ||         |||        ||||||||||||||||||||||||||| ||||||| |||||    
T  26794394 gatgtaaacgttagttacttgttagtgttaactcttagt---------ttctttttttggatatagtgattcttttttggatcgatttagtataacacta 26794304  T
Q  201 ataagttccttttggatatagtgtagcattgatgt 235  Q
    | |||||||||||||||||| ||||||||||||||    
T  26794303 acaagttccttttggatataatgtagcattgatgt 26794269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 3 - 201
Target Start/End: Original strand, 12852729 - 12852927
Alignment:
Q  3 ccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagaggaga 102  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  12852729 ccgcttgatggtgttggaattgagttagcatagttgtctttggatgaactggatttggaagttgatttgtatcttgatgatggaaatggaggagaggaga 12852828  T
Q  103 tgtaaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcactaa 201  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||         |||||| |||||||||||||||||||||||||||||||||||    
T  12852829 tgtaaacgttagttacttgttagtgttaactcttagtacttatgtgttttttttttggatataatgattcttttttggatcgatatagtatagcactaa 12852927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 32707402 - 32707325
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttg 78  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||| ||||||||||||||    
T  32707402 aaccgcttgatggtgttggaattgagttagcatagttgtctttgaatgaaccggattaggaagctgatttgtatcttg 32707325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 9729649 - 9729549
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagagga 100  Q
    ||||| |||||||| |||||||||||||||||   || ||||||||||||||| ||||||||||||||||||||||||||||   |||||||||||||||    
T  9729649 aaccgtttgatggtattggaattgagttagcac--ttatctttggatgaaccgtatttggaagttgatttgtatcttgatgaccggaatggaggagagga 9729552  T
Q  101 gat 103  Q
    |||    
T  9729551 gat 9729549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 160 - 238
Target Start/End: Original strand, 10657220 - 10657299
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagcattgatgtata 238  Q
    |||||| || |||||||||||||||||||||||||||||||| || ||||| |||||||||||| |||||||||||||||    
T  10657220 gatataatgcttcttttttggatcgatatagtatagcactaacaatgttccgtttggatatagtatagcattgatgtata 10657299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 25 - 103
Target Start/End: Complemental strand, 30777405 - 30777327
Alignment:
Q  25 agttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagaggagat 103  Q
    |||||| ||||||||||||||||||||| |||||||||| || ||||||||||| |||||  |||||||||||||||||    
T  30777405 agttagtagagttgtctttggatgaaccagatttggaagctggtttgtatcttgttgatggaaatggaggagaggagat 30777327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 6243043 - 6242960
Alignment:
Q  20 aattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagaggagat 103  Q
    ||||||||||| ||||||||||||||||||||| ||||| |||| || | ||||||||| |||||  |||||||||||||||||    
T  6243043 aattgagttagtagagttgtctttggatgaaccagattttgaagctggtgtgtatcttgttgatggaaatggaggagaggagat 6242960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 11907409 - 11907492
Alignment:
Q  20 aattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagaggagat 103  Q
    ||||||||||  |||||| ||||||||||||||  ||||| ||| |||||||||||||||||| | ||||||||||||||||||    
T  11907409 aattgagttactagagttttctttggatgaaccacatttgaaagctgatttgtatcttgatgacgggaatggaggagaggagat 11907492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 3701326 - 3701401
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagcattgatg 234  Q
    |||| |||| ||||||||||||||||||||||||| |||||| || |||||||||||||||||| ||||| |||||    
T  3701326 gatacagtgcttcttttttggatcgatatagtataacactaacaatgttccttttggatatagtatagcactgatg 3701401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 22738099 - 22738162
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagt 222  Q
    ||||||||| ||||||||||||||||||||||||| |||||| || ||||||||||||||||||    
T  22738099 gatatagtgcttcttttttggatcgatatagtataacactaacaatgttccttttggatatagt 22738162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 26691879 - 26691954
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagcattgatg 234  Q
    ||||||||| |||||||||||||||||| |||||| |||||| || |||||||||||||||||| || ||||||||    
T  26691879 gatatagtgcttcttttttggatcgatagagtataacactaacaatgttccttttggatatagtataacattgatg 26691954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 26961611 - 26961686
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagcattgatg 234  Q
    ||||||||| |||||||||||||||||| |||||| |||||| || |||||||||||||||||| || ||||||||    
T  26961611 gatatagtgcttcttttttggatcgatagagtataacactaacaatgttccttttggatatagtataacattgatg 26961686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 1795635 - 1795696
Alignment:
Q  162 tatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagt 222  Q
    ||||||| |||||||||||||||||||||||||||||||| || ||| ||||||||||||||    
T  1795635 tatagtgcttcttttttggatcgatatagtatagcactaacaatgtttcttttggatatagt 1795696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 170 - 234
Target Start/End: Original strand, 21251734 - 21251799
Alignment:
Q  170 ttcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagcattgatg 234  Q
    |||||||||||||||||||||||||||| ||| || |||||||||||||||||| ||||| |||||    
T  21251734 ttcttttttggatcgatatagtatagcattaacaatgttccttttggatatagtatagcactgatg 21251799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 26716515 - 26716576
Alignment:
Q  162 tatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagt 222  Q
    ||||||| |||||||||||||||||||||||||||||||| || |||| |||||||||||||    
T  26716515 tatagtgcttcttttttggatcgatatagtatagcactaacaatgttcattttggatatagt 26716576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 26986255 - 26986316
Alignment:
Q  162 tatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagt 222  Q
    ||||||| |||||||||||||||||||||||||||||||| || |||| |||||||||||||    
T  26986255 tatagtgcttcttttttggatcgatatagtatagcactaacaatgttcattttggatatagt 26986316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 17138110 - 17138035
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagcattgatg 234  Q
    ||||||||| ||||||||||||| |||||| ||||||||||| || |||||||||| ||||| | |||||||||||    
T  17138110 gatatagtgcttcttttttggattgatataatatagcactaacaatgttccttttgcatataatatagcattgatg 17138035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 228
Target Start/End: Original strand, 25749848 - 25749915
Alignment:
Q  162 tatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagca 228  Q
    ||||||| ||||||||||||||||| || ||||||||||| || |||| |||||||||||||||||||    
T  25749848 tatagtgcttcttttttggatcgatgtaatatagcactaacaatgttcattttggatatagtgtagca 25749915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 228
Target Start/End: Original strand, 27938401 - 27938468
Alignment:
Q  162 tatagtgattcttttttggatcgatatagtatagcactaata-agttccttttggatatagtgtagca 228  Q
    ||||||| |||||||||||||||||||||| ||||||||| |  |||||||||||||||||| |||||    
T  27938401 tatagtgcttcttttttggatcgatatagtgtagcactaacagtgttccttttggatatagtatagca 27938468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 14836574 - 14836635
Alignment:
Q  162 tatagtgattcttttttggatcgatatagtatagcactaa-taagttccttttggatatagt 222  Q
    ||||||| ||||||||||||||||||||||||| ||||||  ||||| ||||||||||||||    
T  14836574 tatagtgcttcttttttggatcgatatagtatatcactaacaaagtttcttttggatatagt 14836635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 27085611 - 27085680
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagca 228  Q
    ||||||||| |||||||||||||||||||| ||||||||||| || |||| ||||| ||||||| |||||    
T  27085611 gatatagtgcttcttttttggatcgatataatatagcactaacaatgttcattttgaatatagtatagca 27085680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 222
Target Start/End: Complemental strand, 43357635 - 43357574
Alignment:
Q  162 tatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagt 222  Q
    ||||||| |||||||||| ||||||||||||||||||||| || ||| ||||||||||||||    
T  43357635 tatagtgcttcttttttgaatcgatatagtatagcactaacaatgtttcttttggatatagt 43357574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 238
Target Start/End: Complemental strand, 5985820 - 5985742
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagcattgatgtata 238  Q
    ||||||||| || ||||||  ||||||||||||||||||||  || |||||||||||||| ||| |||||||||||||||    
T  5985820 gatatagtgttttttttttt-atcgatatagtatagcactagcaatgttccttttggataaagtatagcattgatgtata 5985742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 7629296 - 7629355
Alignment:
Q  170 ttcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagca 228  Q
    |||||||||||||||||||||||||||||||| || ||  |||||||||||||| |||||    
T  7629296 ttcttttttggatcgatatagtatagcactaacaatgtatcttttggatatagtatagca 7629355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 15066453 - 15066528
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagcattgatg 234  Q
    |||||| || |||||||||||||| |||||||||| |||||| || |||||||| ||||||||| ||||| |||||    
T  15066453 gatataatgcttcttttttggatcaatatagtataacactaacaatgttcctttcggatatagtatagcactgatg 15066528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 18001821 - 18001780
Alignment:
Q  161 atatagtgattcttttttggatcgatatagtatagcactaat 202  Q
    |||||||| |||||||||||||||||| ||||||||||||||    
T  18001821 atatagtgcttcttttttggatcgataaagtatagcactaat 18001780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 228
Target Start/End: Complemental strand, 30284450 - 30284394
Alignment:
Q  173 ttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagca 228  Q
    |||||||||||||||||||||| |||||| || |||| ||||||||||||| |||||    
T  30284450 ttttttggatcgatatagtataacactaacaatgttcattttggatatagtatagca 30284394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 11907553 - 11907616
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagt 222  Q
    ||||||||| |||||||||||||||||||| |||| ||| || || || |||||||||||||||    
T  11907553 gatatagtgcttcttttttggatcgatatattataacaccaacaatgtaccttttggatatagt 11907616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 3934655 - 3934602
Alignment:
Q  170 ttcttttttggatcgatatagtatagcactaataa-gttccttttggatatagt 222  Q
    |||||||||||||||||||| |||| |||||| || ||| ||||||||||||||    
T  3934655 ttcttttttggatcgatataatataacactaacaatgtttcttttggatatagt 3934602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 201
Target Start/End: Complemental strand, 5612297 - 5612256
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaa 201  Q
    ||||||||| ||||||||| ||| ||||||||||||||||||    
T  5612297 gatatagtgcttctttttttgattgatatagtatagcactaa 5612256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 34032625 - 34032665
Alignment:
Q  161 atatagtgattcttttttggatcgatatagtatagcactaa 201  Q
    |||||||| || ||||||||||||||| |||||||||||||    
T  34032625 atatagtgcttattttttggatcgataaagtatagcactaa 34032665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 35746197 - 35746157
Alignment:
Q  162 tatagtgattcttttttggatcgatatagtatagcactaat 202  Q
    ||||||| ||||||||| ||||||||||||||| |||||||    
T  35746197 tatagtgtttcttttttagatcgatatagtataacactaat 35746157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 28948710 - 28948471
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagagga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  28948710 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaatcggatttggaagttgatttgtatcttgatgatgagaatggatgagagga 28948611  T
Q  101 gatgtaaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcacta 200  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||        ||||||||||||||||||||||||||||||||||| |||||    
T  28948610 gatgtaaacgttagttacttgttagtgttaactcttagtactgatgtgttctttttttggatatagtgattcttttttggatcgatatagtataacacta 28948511  T
Q  201 ataagttccttttggatatagtgtagcattgatgtatagc 240  Q
    | ||||||||||||||||||||||||||||||||||||||    
T  28948510 acaagttccttttggatatagtgtagcattgatgtatagc 28948471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 6916365 - 6916128
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagagga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  6916365 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatctgtatcttgatgatgggaatggaggagagga 6916266  T
Q  101 gatgtaaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcacta 200  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||||||        ||||||||||||||||||||||||||||||||||| |||||    
T  6916265 gatgtaaacgtcagttacttgttagtgttaactcttagtactgatgtgttctttttttggatatagtgattcttttttggatcgatatagtatatcacta 6916166  T
Q  201 ataagttccttttggatatagtgtagcattgatgtata 238  Q
    | |||||| |||||||||||||||||||||||||||||    
T  6916165 acaagttcattttggatatagtgtagcattgatgtata 6916128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 38331054 - 38331291
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagagga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  38331054 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatctgtatcttgatgatgggaatggaggagagga 38331153  T
Q  101 gatgtaaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcacta 200  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||||||        ||||||||||||||||||||||||||||||||||| |||||    
T  38331154 gatgtaaacgtcagttacttgttagtgttaactcttagtactgatgtgttctttttttggatatagtgattcttttttggatcgatatagtatatcacta 38331253  T
Q  201 ataagttccttttggatatagtgtagcattgatgtata 238  Q
    | |||||| |||||||||||||||||||||||||||||    
T  38331254 acaagttcattttggatatagtgtagcattgatgtata 38331291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 52895204 - 52894968
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagagga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  52895204 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatctgtatcttgatgatgggaatggaggagagga 52895105  T
Q  101 gatgtaaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcacta 200  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||||||        |||||||||||| |||||||||||||||||||||| |||||    
T  52895104 gatgtaaacgtcagttacttgttagtgttaactcttagtactgatgtgttctttttttggatatagtgatttttttttggatcgatatagtatatcacta 52895005  T
Q  201 ataagttccttttggatatagtgtagcattgatgtat 237  Q
    | |||||| ||||||||||||||||||||||||||||    
T  52895004 acaagttcattttggatatagtgtagcattgatgtat 52894968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 8132787 - 8133024
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagagga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  8132787 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatctgtatcttgatgatgggaatggaggagagga 8132886  T
Q  101 gatgtaaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcacta 200  Q
    ||||||||| | |||||||||||||||||||||||| ||||||||||||||         |||||||||||||||||||||||||||||| ||| |||||    
T  8132887 gatgtaaacatcagttacttgttagtgttaactcttagtactgatgtgttctttttttgaatatagtgattcttttttggatcgatatagaatatcacta 8132986  T
Q  201 ataagttccttttggatatagtgtagcattgatgtata 238  Q
    | |||||| |||||||||||||||||||||||||||||    
T  8132987 acaagttcattttggatatagtgtagcattgatgtata 8133024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 5984792 - 5985028
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagagga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||| |||||| |||||||||||||||    
T  5984792 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaactgaatttggaagctgatttgtatcttaatgatgggaatggaggagagga 5984891  T
Q  101 gatgtaaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcacta 200  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||        ||||||||| ||||||||||||||||||||||||||||||     
T  5984892 gatgtaaacgttagttacttgttagtgttaactcttagtactgatgtgttc-ttttttggatatagtgcttcttttttggatcgatatagtatagcactg 5984990  T
Q  201 ataagttccttttggatatagtgtagcattgatgtata 238  Q
    | ||||||||||||||||||||||||||||||||||||    
T  5984991 acaagttccttttggatatagtgtagcattgatgtata 5985028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 25257223 - 25257462
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagagga 100  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||| ||    
T  25257223 aaccgcttgatgatgttggaattgagttagaagagttgtctttggatgaaccggatttggaagctgatttgtatcttgatgatgggaatggaagaga-ga 25257321  T
Q  101 gatgtaaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcacta 200  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||        ||||||||| |||||||||||||||||||||||||||||||    
T  25257322 gatgtaaacgttagttacttgttagtgttaactcttagtactgatgtgttc-ttttttggatatagtgcttcttttttggatcgatatagtatagcacta 25257420  T
Q  201 ataagttccttttggatatagtgtagcattgatgtatagcac 242  Q
    | ||||||||||||||||||||||||||||||||||||||||    
T  25257421 acaagttccttttggatatagtgtagcattgatgtatagcac 25257462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 30324326 - 30324557
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagagga 100  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  30324326 aaccgcttgatgatgttg-aattgagttagcagagttgtctttggatgaaccggatttggaaggtgatttgtatctcgatgatgagaatggaggagagga 30324424  T
Q  101 gatgtaaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcacta 200  Q
    ||| |||||||||||||||||||||||||||||||| ||||||||||||||        ||||||||| |||||||||||||||||||||||||||||||    
T  30324425 gatataaacgttagttacttgttagtgttaactcttagtactgatgtgttc-ttttttggatatagtgcttcttttttggatcgatatagtatagcacta 30324523  T
Q  201 ataagttccttttggatatagtgtagcattgatg 234  Q
    | || |||||||||||||||||||||||||||||    
T  30324524 acaaattccttttggatatagtgtagcattgatg 30324557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 3427455 - 3427704
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagagga 100  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3427455 aaccacttgatgatgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgggaatggaggagagga 3427554  T
Q  101 gatgtaaacgttagttacttgttagtgttaactcttggtactgatgtgttc------nnnnnnnngatatagtgattcttttttggatcgatatagtata 194  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||              |||||||||||||||||||||||||||||||||||    
T  3427555 gatgtaaacgttagttacttgttagtgttaactcttagtagtgatgtgttctttttttttttttggatatagtgattcttttttggatcgatatagtata 3427654  T
Q  195 gcactaataagttccttttggatatagtgtagcattgatgtatagcacag 244  Q
     |||||| |||||| ||||  |||||||||||||||||||||||||||||    
T  3427655 acactaacaagttcattttatatatagtgtagcattgatgtatagcacag 3427704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 105 - 238
Target Start/End: Complemental strand, 36367577 - 36367444
Alignment:
Q  105 taaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcactaataa 204  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||        |||||||||||||||||||||||||||||||||||||||||| ||    
T  36367577 taaacgttagttacttgttagtgttaactcttagtactgatgtgttctttttttggatatagtgattcttttttggatcgatatagtatagcactaacaa 36367478  T
Q  205 gttccttttggatatagtgtagcattgatgtata 238  Q
    ||||||||||||||||||||||||||||||||||    
T  36367477 gttccttttggatatagtgtagcattgatgtata 36367444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 105 - 238
Target Start/End: Original strand, 37104359 - 37104492
Alignment:
Q  105 taaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcactaataa 204  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||        |||||||||||||||||||||||||||||||||||||||||| ||    
T  37104359 taaacgttagttacttgttagtgttaactcttagtactgatgtgttctttttttggatatagtgattcttttttggatcgatatagtatagcactaacaa 37104458  T
Q  205 gttccttttggatatagtgtagcattgatgtata 238  Q
    ||| ||||||||||||||||||||||||||||||    
T  37104459 gtttcttttggatatagtgtagcattgatgtata 37104492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 160 - 238
Target Start/End: Complemental strand, 36363398 - 36363320
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataagttccttttggatatagtgtagcattgatgtata 238  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  36363398 gatatagtgattcttttttggatcgatatagtatagcactaacaagttccttttggatatagtgtagcattgatgtata 36363320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 160 - 242
Target Start/End: Complemental strand, 28658746 - 28658665
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataagttccttttggatatagtgtagcattgatgtatagcac 242  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  28658746 gatatagtgcttcttttttggatcgatatagtatagcactaacaagttccttttggatatagtgtagca-tgatgtatagcac 28658665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 160 - 238
Target Start/End: Original strand, 43190019 - 43190098
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagcattgatgtata 238  Q
    ||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||    
T  43190019 gatatagtgcttcttttttggatcgatatagtatagcactaacaatgttccttttggatatagtatagcattgatgtata 43190098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 1043779 - 1043855
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttg 78  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||| ||||||||||||||    
T  1043779 aaccgcttgatggtgttggaattgagttagcagagttgt-tttgaatgaaccggattaggaagctgatttgtatcttg 1043855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 24851732 - 24851801
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagca 228  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||| |||||    
T  24851732 gatatagtgattcttttttggatcgatatagtatagcactaacaatgttcgttttggatatagtatagca 24851801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 160 - 233
Target Start/End: Original strand, 14334533 - 14334607
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagcattgat 233  Q
    ||||| ||| |||||||||||||||||||||||||||||||| || ||| |||||||||||||| ||||||||||    
T  14334533 gatatggtgcttcttttttggatcgatatagtatagcactaacaatgtttcttttggatatagtatagcattgat 14334607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 160 - 233
Target Start/End: Complemental strand, 31653158 - 31653084
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagcattgat 233  Q
    ||||||||| |||||||||||||||||||||||||||| ||| ||  ||||||||||||||||| ||||||||||    
T  31653158 gatatagtgcttcttttttggatcgatatagtatagcattaacaattttccttttggatatagtatagcattgat 31653084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 1036886 - 1036949
Alignment:
Q  14 tgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttg 78  Q
    |||||||||||||||||||||||||| |||| |||||||||||| ||||| ||||||||||||||    
T  1036886 tgttggaattgagttagcagagttgt-tttgaatgaaccggattaggaagctgatttgtatcttg 1036949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 237
Target Start/End: Complemental strand, 13012732 - 13012654
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagcattgatgtat 237  Q
    ||||||||| |||||||||||||||||||| ||||||||||  || ||||||||| |||||||| || |||||||||||    
T  13012732 gatatagtgcttcttttttggatcgatataatatagcactagcaatgttccttttagatatagtataacattgatgtat 13012654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 228
Target Start/End: Complemental strand, 9528720 - 9528653
Alignment:
Q  162 tatagtgattcttttttggatcgatatagtatagcactaa-taagttccttttggatatagtgtagca 228  Q
    ||||||| ||||||||||||||||||||||||||||||||  | ||| |||||||||||||| |||||    
T  9528720 tatagtgcttcttttttggatcgatatagtatagcactaacgatgtttcttttggatatagtatagca 9528653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 47654926 - 47655001
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagcattgatg 234  Q
    ||||||||| ||||||||||||||||||||||||| |||||| || |||| ||||||||||| | ||||| |||||    
T  47654926 gatatagtgcttcttttttggatcgatatagtataacactaacaatgttcattttggatataatatagcactgatg 47655001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 165 - 228
Target Start/End: Original strand, 9781887 - 9781951
Alignment:
Q  165 agtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagca 228  Q
    |||| |||||||||||||||||| ||||||||||||| || ||| |||||||||||||| |||||    
T  9781887 agtgcttcttttttggatcgatacagtatagcactaacaatgtttcttttggatatagtatagca 9781951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 220
Target Start/End: Original strand, 36551647 - 36551707
Alignment:
Q  161 atatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatata 220  Q
    |||||||| ||||||||| ||||||||||||||| |||||| || ||||||||||||||||    
T  36551647 atatagtgtttcttttttagatcgatatagtataacactaacaatgttccttttggatata 36551707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 228
Target Start/End: Complemental strand, 34096429 - 34096362
Alignment:
Q  162 tatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagca 228  Q
    ||||||| ||||||||| |||||||||||||||||||||| || ||| ||||| |||||||| |||||    
T  34096429 tatagtgcttcttttttagatcgatatagtatagcactaacaatgtttcttttagatatagtatagca 34096362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 28658809 - 28658775
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagag 35  Q
    |||||||||||||||||||||||||||||||||||    
T  28658809 aaccgcttgatggtgttggaattgagttagcagag 28658775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 222
Target Start/End: Complemental strand, 34432291 - 34432230
Alignment:
Q  162 tatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagt 222  Q
    ||||||| ||||||||||||||||||||||||| |||||| || ||| |||| |||||||||    
T  34432291 tatagtgcttcttttttggatcgatatagtataacactaacaatgtttctttgggatatagt 34432230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 10763903 - 10763955
Alignment:
Q  170 ttcttttttggatcgatatagtatagcactaataa-gttccttttggatatag 221  Q
    ||||||||| |||||||||||||||||||||| || ||| |||||||||||||    
T  10763903 ttcttttttagatcgatatagtatagcactaaaaatgtttcttttggatatag 10763955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 24589978 - 24589938
Alignment:
Q  161 atatagtgattcttttttggatcgatatagtatagcactaa 201  Q
    |||||||| ||||||||||||||||||||||||| ||||||    
T  24589978 atatagtgtttcttttttggatcgatatagtataacactaa 24589938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 234
Target Start/End: Original strand, 37922465 - 37922529
Alignment:
Q  171 tcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagcattgatg 234  Q
    ||||| || ||| |||||||||||||||||| || ||| |||||||||||||| |||||||||||    
T  37922465 tctttcttagatagatatagtatagcactaacaatgtttcttttggatatagtatagcattgatg 37922529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 10822644 - 10822703
Alignment:
Q  170 ttcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagca 228  Q
    |||||||||||||||||||| |||| |||||| || ||| |||||||||||||| |||||    
T  10822644 ttcttttttggatcgatataatatatcactaacaatgtttcttttggatatagtatagca 10822703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 233
Target Start/End: Complemental strand, 37346698 - 37346623
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gtt-ccttttggatatagtgtagcattgat 233  Q
    ||||||||| ||||||||| ||| |||||||||||||| ||| || ||| |||||| |||||||| ||||||||||    
T  37346698 gatatagtgcttctttttttgattgatatagtatagcattaacaatgttccctttttgatatagtatagcattgat 37346623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 201
Target Start/End: Complemental strand, 3708142 - 3708101
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaa 201  Q
    |||||| || |||||||||||||||||| |||||||||||||    
T  3708142 gatataatgcttcttttttggatcgataaagtatagcactaa 3708101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 29168197 - 29168250
Alignment:
Q  170 ttcttttttggatcgatatagtatagcactaataa-gttccttttggatatagt 222  Q
    |||||||||||||| ||||||||||| ||||| || ||| ||||||||||||||    
T  29168197 ttcttttttggatcaatatagtatagtactaacaatgtttcttttggatatagt 29168250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 29862039 - 29862100
Alignment:
Q  162 tatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagt 222  Q
    ||||||| ||||||||||||| |||| |||||| |||||| || ||| ||||||||||||||    
T  29862039 tatagtgcttcttttttggattgataaagtataccactaacaatgtttcttttggatatagt 29862100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 7188281 - 7188039
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagagga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  7188281 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgggaatggaggagagga 7188182  T
Q  101 gatgtaaacgttagttacttgttagtgttaactcttggtactgatgtgttc-nnnnnnnngatatagtgattcttttttggatcgatatagtatagcact 199  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||||||||         ||||||||||||||||||||||||||||||||||||||||    
T  7188181 gatgtaaatgttagttacttgttagtgttaactcttagtactgatgtgttcttttttttggatatagtgattcttttttggatcgatatagtatagcact 7188082  T
Q  200 aataagttccttttggatatagtgtagcattgatgtatagcac 242  Q
    || ||||||||||||||||||||||||||||||||||||||||    
T  7188081 aacaagttccttttggatatagtgtagcattgatgtatagcac 7188039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 1036317 - 1036080
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagagga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  1036317 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatctgtatcttgatgatgggaatggaggagagga 1036218  T
Q  101 gatgtaaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcacta 200  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||||||        ||||||||||||||||||||||||||||||||||| |||||    
T  1036217 gatgtaaacgtcagttacttgttagtgttaactcttagtactgatgtgttctttttttggatatagtgattcttttttggatcgatatagtatatcacta 1036118  T
Q  201 ataagttccttttggatatagtgtagcattgatgtata 238  Q
    | |||||| |||||||||||||||||||||||||||||    
T  1036117 acaagttcattttggatatagtgtagcattgatgtata 1036080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 8357497 - 8357735
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagagga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||  ||||||||||||||    
T  8357497 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaacctgatttggaagcttatttgtatcttgatgatggtaatggaggagagga 8357596  T
Q  101 gatgtaaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcacta 200  Q
    ||| |||| ||||||||||||||||||||||||||| ||||||||||||||        ||||||||| |||||||||||||| ||||| ||||| ||||    
T  8357597 gatttaaatgttagttacttgttagtgttaactcttagtactgatgtgttc-ttttttggatatagtgcttcttttttggatcaatataatatagtacta 8357695  T
Q  201 ataagttccttttgga-tatagtgtagcattgatgtatag 239  Q
    | |||||||||||||| ||||||| | |||||||||||||    
T  8357696 acaagttccttttggattatagtgcaacattgatgtatag 8357735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 105 - 238
Target Start/End: Complemental strand, 31195748 - 31195615
Alignment:
Q  105 taaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcactaataa 204  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||        |||||||||||||||||||||||||||||||||||||||||| ||    
T  31195748 taaacgttagttacttgttagtgttaactcttagtactgttgtgttctttttttggatatagtgattcttttttggatcgatatagtatagcactaacaa 31195649  T
Q  205 gttccttttggatatagtgtagcattgatgtata 238  Q
    ||||||||||||||||||||||||||||||||||    
T  31195648 gttccttttggatatagtgtagcattgatgtata 31195615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 22989125 - 22989026
Alignment:
Q  4 cgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagaggagat 103  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||    
T  22989125 cgcttgatgatgttggaattgagttagcagagttgtctttggatgaaccggatttggaagctgatttgtatcttgatgatgtgaatggaggagagaagat 22989026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 23799271 - 23799370
Alignment:
Q  4 cgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagaggagat 103  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||    
T  23799271 cgcttgatgatgttggaattgagttagcagagttgtctttggatgaaccggatttggaagctgatttgtatcttgatgatgtgaatggaggagagaagat 23799370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 10894375 - 10894300
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagcattgatg 234  Q
    ||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||| |||||    
T  10894375 gatatagtgcttcttttttggatcgatatagtatagcactaacaatgttccttttggatatagtatagcactgatg 10894300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 160 - 238
Target Start/End: Complemental strand, 31740558 - 31740479
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagcattgatgtata 238  Q
    ||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||| | || ||||||||||||    
T  31740558 gatatagtgcttcttttttggatcgatatagtatagcactaacaatgttccttttggatataatataacattgatgtata 31740479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 25 - 103
Target Start/End: Original strand, 3212692 - 3212770
Alignment:
Q  25 agttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagaggagat 103  Q
    |||||| ||||||||||||||||||||| |||||||||| || ||||||||||| |||||  |||||||||||||||||    
T  3212692 agttagtagagttgtctttggatgaaccagatttggaagctggtttgtatcttgttgatggaaatggaggagaggagat 3212770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 19128395 - 19128456
Alignment:
Q  162 tatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagt 222  Q
    ||||||| |||||||||||||||||||||||||||||||| || ||| ||||||||||||||    
T  19128395 tatagtgcttcttttttggatcgatatagtatagcactaacaatgtttcttttggatatagt 19128456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 233
Target Start/End: Original strand, 7255183 - 7255258
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa--gttccttttggatatagtgtagcattgat 233  Q
    ||||||||| ||||||||||||||||||||||||| || ||| ||  |||||||||||||||||| ||||| ||||    
T  7255183 gatatagtgcttcttttttggatcgatatagtataacattaacaaatgttccttttggatatagtatagcactgat 7255258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 234551 - 234612
Alignment:
Q  162 tatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagt 222  Q
    ||||||| |||||||||||||||||||||||||||||| | || ||| ||||||||||||||    
T  234551 tatagtgcttcttttttggatcgatatagtatagcactgacaatgtttcttttggatatagt 234612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 22988972 - 22988923
Alignment:
Q  170 ttcttttttggatcgatatagtatagcactaataa-gttccttttggata 218  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||    
T  22988972 ttcttttttggatcgatatagtatagcactaacaatgttccttttggata 22988923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 218
Target Start/End: Original strand, 23799424 - 23799473
Alignment:
Q  170 ttcttttttggatcgatatagtatagcactaataa-gttccttttggata 218  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||    
T  23799424 ttcttttttggatcgatatagtatagcactaacaatgttccttttggata 23799473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 32018222 - 32018279
Alignment:
Q  20 aattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatctt 77  Q
    ||||||||||| |||||||||||||||||||||  ||||||||| || ||||||||||    
T  32018222 aattgagttagtagagttgtctttggatgaaccaaatttggaagctggtttgtatctt 32018279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 32130401 - 32130342
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggata 218  Q
    ||||||||| |||||||||||||| ||||||||||||| ||| || ||||||||||||||    
T  32130401 gatatagtgcttcttttttggatcaatatagtatagcattaacaatgttccttttggata 32130342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 6707883 - 6707821
Alignment:
Q  173 ttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagcattgatg 234  Q
    ||||||||||| |||||||||| |||||| || |||| ||||||||||||| |||||||||||    
T  6707883 ttttttggatcaatatagtataacactaacaatgttcattttggatatagtatagcattgatg 6707821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 202
Target Start/End: Complemental strand, 13061230 - 13061188
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaat 202  Q
    ||||||| | |||||||||||||||||||||||||||||||||    
T  13061230 gatatagcgcttcttttttggatcgatatagtatagcactaat 13061188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 27084216 - 27084277
Alignment:
Q  162 tatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagt 222  Q
    ||||||| |||||||||| ||||||||||||||| ||||| || |||||||| |||||||||    
T  27084216 tatagtgcttcttttttgaatcgatatagtatagaactaacaatgttcctttcggatatagt 27084277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 32018358 - 32018427
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagca 228  Q
    ||||||||| ||||||||| ||| ||||||||||| |||||| || |||| ||||||||||||| |||||    
T  32018358 gatatagtgtttcttttttagattgatatagtataacactaacaatgttctttttggatatagtatagca 32018427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 201
Target Start/End: Original strand, 26327557 - 26327598
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaa 201  Q
    ||||||||| |||||||||||||| |||||||||| ||||||    
T  26327557 gatatagtgcttcttttttggatcaatatagtataacactaa 26327598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 45216723 - 45216483
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagagga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  45216723 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagtttatttgtatcttgatgatgggaatggaggagagga 45216624  T
Q  101 gatgtaaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcacta 200  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||        |||||| |||||||||||||||||||||||||||| |||||    
T  45216623 gatgtaaacgttagttacttgttagtgttaactcttagtactgatgtgttctttttttggatataatgattcttttttggatcgatatagtataacacta 45216524  T
Q  201 ataagttccttttggatatagtgtagcattgatgtatagca 241  Q
    | |||||||||||||||||||||||||||||||||||||||    
T  45216523 acaagttccttttggatatagtgtagcattgatgtatagca 45216483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 4246544 - 4246781
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagagga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  4246544 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatctgtatcttgatgatgggaatggaggagagga 4246643  T
Q  101 gatgtaaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcacta 200  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||||||        ||||||||||||||||||||||||||||||||||| |||||    
T  4246644 gatgtaaacgtcagttacttgttagtgttaactcttagtactgatgtgttctttttttggatatagtgattcttttttggatcgatatagtatatcacta 4246743  T
Q  201 ataagttccttttggatatagtgtagcattgatgtata 238  Q
    | |||||| |||||||||||||||||||||||||||||    
T  4246744 acaagttcattttggatatagtgtagcattgatgtata 4246781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 5540037 - 5540274
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagagga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||    
T  5540037 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatggtaatgaaggagagga 5540136  T
Q  101 gatgtaaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcacta 200  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||        |||||||||||||||||||||||||||||| ||||||||||    
T  5540137 gatgcaaacgttagttacttgttagtgttaactcttagtactgatgtgttctttttttggatatagtgattcttttttggatcgatataatatagcacta 5540236  T
Q  201 ataagttccttttggatatagtgtagcattgatgtata 238  Q
    | ||||||||||||||||||||||||||||||||||||    
T  5540237 acaagttccttttggatatagtgtagcattgatgtata 5540274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 34900872 - 34900635
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagagga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  34900872 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatctgtatcttgatgatgggaatggaggagagga 34900773  T
Q  101 gatgtaaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcacta 200  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||||||        ||||||||||||||||||||||||||||||||||| |||||    
T  34900772 gatgtaaacgtcagttacttgttagtgttaactcttagtactgatgtgttctttttttggatatagtgattcttttttggatcgatatagtatatcacta 34900673  T
Q  201 ataagttccttttggatatagtgtagcattgatgtata 238  Q
    | |||||| |||||||||||||||||||||||||||||    
T  34900672 acaagttcattttggatatagtgtagcattgatgtata 34900635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 12580038 - 12579798
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagagga 100  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  12580038 aaccgcttgatggtgttggaattgagtcagcagagctgtctttggatgaaccggatttggaagctgatttgtatcttgatgatgggaatggaggagagga 12579939  T
Q  101 gatgtaaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcacta 200  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||        ||||||||| |||||||||||||||||||||||||||||||    
T  12579938 gatgtaaacgttagttacttgttagtgttaactcttagtactgatgtgttc-ttttttggatatagtgcttcttttttggatcgatatagtatagcacta 12579840  T
Q  201 ataagttccttttggatatagtgtagcattgatgtatagcac 242  Q
    | ||||||||||||||||||||||||||||||||||||||||    
T  12579839 acaagttccttttggatatagtgtagcattgatgtatagcac 12579798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 36484040 - 36484276
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagagga 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  36484040 aaccgcttgatggtgttggaattgagttggcagagttgtctttggatgaaccggatttggaagctgatttgtatcttgatgatgggaatggaggagagga 36484139  T
Q  101 gatgtaaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcacta 200  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||||||        ||||||||| |||||||||||||||||||||||||||||||    
T  36484140 gatgtaaacgttagttacttgttagtgttaacttttagtactgatgtgttc-ttttttggatatagtgcttcttttttggatcgatatagtatagcacta 36484238  T
Q  201 ataagttccttttggatatagtgtagcattgatgtata 238  Q
    | ||||||||||||||||||||||||||||||||||||    
T  36484239 acaagttccttttggatatagtgtagcattgatgtata 36484276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 7 - 235
Target Start/End: Complemental strand, 28876062 - 28875834
Alignment:
Q  7 ttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagaggagatgta 106  Q
    ||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  28876062 ttgatggtgttggaattgagttagcagagttgtctttagatgaatcagatttggaagttgatttgtatcttgataatgggaatggaggagaggagatgta 28875963  T
Q  107 aacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcactaataagt 206  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||        |||||||||||||||||||||||||||||||||||||||||| ||||    
T  28875962 aacgttagttacttgttagttttaactcttagtactgatgtgttctttttttggatatagtgattcttttttggatcgatatagtatagcactaacaagt 28875863  T
Q  207 tccttttggatatagtgtagcattgatgt 235  Q
    |||||||||||||||||||||||||||||    
T  28875862 tccttttggatatagtgtagcattgatgt 28875834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 37669185 - 37669421
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagagga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  37669185 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagctgatttgtatcttgatgatgggaatggaggagagga 37669284  T
Q  101 gatgtaaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcacta 200  Q
    |||||||||||||||||||||||| | ||||||||| ||| ||||||||||        ||||||||| |||||||||||||| ||||| ||||||||||    
T  37669285 gatgtaaacgttagttacttgttaatattaactcttagtattgatgtgttc-ttttttggatatagtgcttcttttttggatcaatataatatagcacta 37669383  T
Q  201 ataagttccttttggatatagtgtagcattgatgtata 238  Q
    | ||||| |||||||||||| |||||||||||||||||    
T  37669384 acaagtttcttttggatatactgtagcattgatgtata 37669421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 43771217 - 43770970
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagagga 100  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  43771217 aaccacttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgggaatggaggagagga 43771118  T
Q  101 gatgtaaacgttagttacttgttagtgttaactcttggtactgatgtgttc----------nnnnnnnngatatagtgattcttttttggatcgatatag 190  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||                  |||||||||||||||||||||||||||||||    
T  43771117 gatgtaaacgttagttacttgttagtgttaactcttagtagtgatgtgttctttttttttttttttttggatatagtgattcttttttggatcgatatag 43771018  T
Q  191 tatagcactaataagttccttttggatatagtgtagcattgatgtata 238  Q
    |||| |||||| |||||||||||  |||||||||||||||||||||||    
T  43771017 tataacactaacaagttccttttatatatagtgtagcattgatgtata 43770970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 103 - 238
Target Start/End: Original strand, 32760073 - 32760207
Alignment:
Q  103 tgtaaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcactaat 202  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||        ||||||||| ||||||||||||||||||||||||||||||||     
T  32760073 tgtaaacgttagttacttgttagtgttaactcttagtactgatgtgttcttttttg-gatatagtgcttcttttttggatcgatatagtatagcactaac 32760171  T
Q  203 aagttccttttggatatagtgtagcattgatgtata 238  Q
    ||||||||||||||||||||||||||||||||||||    
T  32760172 aagttccttttggatatagtgtagcattgatgtata 32760207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 105 - 238
Target Start/End: Complemental strand, 22201217 - 22201084
Alignment:
Q  105 taaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcactaataa 204  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||        |||||||||||||||||||||||||||||||||||| ||||| ||    
T  22201217 taaacgttagttacttgttagtgttaactcttagtactgatgtgttctttttttggatatagtgattcttttttggatcgatatagtatagtactaacaa 22201118  T
Q  205 gttccttttggatatagtgtagcattgatgtata 238  Q
    ||| ||||||||||||||||||||||||||||||    
T  22201117 gtttcttttggatatagtgtagcattgatgtata 22201084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 89 - 242
Target Start/End: Complemental strand, 32638628 - 32638476
Alignment:
Q  89 tggaggagaggagatgtaaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatat 188  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||        ||||||||| |||||||||||||||||||    
T  32638628 tggaggagaggagatgtaaacgttacttacttgttagtgttaactcttagtactcatgtgttcttttttg-gatatagtgcttcttttttggatcgatat 32638530  T
Q  189 agtatagcactaataagttccttttggatatagtgtagcattgatgtatagcac 242  Q
     |||||||||||| |||||||||||| |||||||||||||| ||||||||||||    
T  32638529 tgtatagcactaacaagttccttttgaatatagtgtagcatcgatgtatagcac 32638476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 160 - 238
Target Start/End: Original strand, 6028865 - 6028944
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagcattgatgtata 238  Q
    ||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||    
T  6028865 gatatagtgcttcttttttggatcgatatagtatagcactaacaatgttccttttggatatagtatagcattgatgtata 6028944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 160 - 238
Target Start/End: Original strand, 32877830 - 32877909
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagcattgatgtata 238  Q
    ||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||| |||| ||||||||||    
T  32877830 gatatagtgcttcttttttggatcgatatagtatagcactaacaatgttccttttggatatagtatagcgttgatgtata 32877909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 8171106 - 8171023
Alignment:
Q  20 aattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagaggagat 103  Q
    ||||||||||| ||||||||||||||||||||| |||||||||| || ||||||||||| |||||  ||| |||||||||||||    
T  8171106 aattgagttagtagagttgtctttggatgaaccagatttggaagctgctttgtatcttgttgatggaaatagaggagaggagat 8171023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 40412661 - 40412744
Alignment:
Q  20 aattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagaggagat 103  Q
    ||||||||||| |||||| |||||||||||||| |||||||||| || ||||||||||| |||||  |||| ||||||||||||    
T  40412661 aattgagttagtagagttatctttggatgaaccagatttggaagctggtttgtatcttgttgatggaaatgaaggagaggagat 40412744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 160 - 233
Target Start/End: Original strand, 19436627 - 19436701
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagcattgat 233  Q
    ||||||||| |||||||||||||||||||||||||||| ||| || |||||||||||||||||| || |||||||    
T  19436627 gatatagtgcttcttttttggatcgatatagtatagcattaacaatgttccttttggatatagtataacattgat 19436701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 160 - 233
Target Start/End: Original strand, 19572776 - 19572850
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagcattgat 233  Q
    ||||||||| |||||||||||||||||||||||||||| ||| || |||||||||||||||||| || |||||||    
T  19572776 gatatagtgcttcttttttggatcgatatagtatagcattaacaatgttccttttggatatagtataacattgat 19572850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 2872488 - 2872440
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatga 49  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2872488 aaccgcttgatggtgttggaattgagttagcagagttgtctttagatga 2872440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 233
Target Start/End: Original strand, 25022529 - 25022603
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagcattgat 233  Q
    ||||||||| |||||||||||||| ||||||||||||| ||  || |||| ||||||||||||||||||||||||    
T  25022529 gatatagtgtttcttttttggatcaatatagtatagcattatcaatgttctttttggatatagtgtagcattgat 25022603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 160 - 228
Target Start/End: Complemental strand, 27109051 - 27108982
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagca 228  Q
    ||||||||| ||||||||||||||||||||||||| |||||| ||  ||||||||||||||||| |||||    
T  27109051 gatatagtgcttcttttttggatcgatatagtataacactaacaattttccttttggatatagtatagca 27108982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 3892206 - 3892267
Alignment:
Q  162 tatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagt 222  Q
    ||||||| ||||||||||||| |||||||||||||||||| || ||| ||||||||||||||    
T  3892206 tatagtgcttcttttttggattgatatagtatagcactaacaatgtttcttttggatatagt 3892267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 113
Target Start/End: Complemental strand, 32638676 - 32638631
Alignment:
Q  68 tttgtatcttgatgatgagaatggaggagaggagatgtaaacgtta 113  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||    
T  32638676 tttgtatcttgaagatgggaatggaggagaggagatgtaaacgtta 32638631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 8170962 - 8170887
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagcattgatg 234  Q
    ||||||||| ||||||||| |||||||||||||||||||||  || |||| |||||||||| || ||||| |||||    
T  8170962 gatatagtgcttcttttttagatcgatatagtatagcactaccaatgttctttttggatattgtatagcactgatg 8170887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 233
Target Start/End: Complemental strand, 19947718 - 19947644
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagcattgat 233  Q
    ||||||||| ||||||||||||||||||||||||| || ||| || ||| ||||||| |||||| || |||||||    
T  19947718 gatatagtgcttcttttttggatcgatatagtataacattaacaatgtttcttttgggtatagtataacattgat 19947644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 40412805 - 40412874
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagca 228  Q
    ||||||||| || |||||| |||||||||||||||||||||| || ||||  |||||||||||| |||||    
T  40412805 gatatagtgctttttttttagatcgatatagtatagcactaacaatgttctctttggatatagtatagca 40412874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 201
Target Start/End: Original strand, 42949444 - 42949485
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaa 201  Q
    ||||||||| |||||||||||||||||||||||| |||||||    
T  42949444 gatatagtgcttcttttttggatcgatatagtatcgcactaa 42949485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 20182629 - 20182692
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagt 222  Q
    ||||| ||| |||||||||  |||||||||||||| |||||| || ||||||||||||||||||    
T  20182629 gatatggtgcttcttttttttatcgatatagtataacactaacaatgttccttttggatatagt 20182692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 5818199 - 5818138
Alignment:
Q  170 ttcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagcatt 230  Q
    |||| |||||||| ||| |||||||||||||| || |||||||||| ||||||| |||||||    
T  5818199 ttctgttttggattgatgtagtatagcactaacaatgttccttttgaatatagtatagcatt 5818138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 37372502 - 37372539
Alignment:
Q  162 tatagtgattcttttttggatcgatatagtatagcact 199  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  37372502 tatagtgcttcttttttggatcgatataatatagcact 37372539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 8063598 - 8063361
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagagga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  8063598 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatctgtatcttgatgatgggaatggaggagagga 8063499  T
Q  101 gatgtaaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcacta 200  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||||||        ||||||||||||||||||||||||||||||||||| |||||    
T  8063498 gatgtaaacgtcagttacttgttagtgttaactcttagtactgatgtgttctttttttggatatagtgattcttttttggatcgatatagtatatcacta 8063399  T
Q  201 ataagttccttttggatatagtgtagcattgatgtata 238  Q
    | |||||| |||||||||||||||||||||||||||||    
T  8063398 acaagttcattttggatatagtgtagcattgatgtata 8063361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 53322957 - 53323197
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagagga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||    
T  53322957 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagctaatttgtatcttgatgatgggaatggaggagagga 53323056  T
Q  101 gatgtaaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcacta 200  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||        |||| |||| |||||||||||||||||||||||||||||||    
T  53323057 gatgtaaacgttagttacttgttagtgttaactcttagtactgatgtgttc-ttttttggatacagtgcttcttttttggatcgatatagtatagcacta 53323155  T
Q  201 ataagttccttttggatatagtgtagcattgatgtatagcac 242  Q
    | ||||||||||||||||||||||||||||||||||||||||    
T  53323156 acaagttccttttggatatagtgtagcattgatgtatagcac 53323197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 3403075 - 3402838
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagagga 100  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3403075 aaccgcttgatggtgttggaattgagttagcaaagttgtccttggatgaaccggatttggaagttgatttgtatcttgatgatgggaatggaggagagga 3402976  T
Q  101 gatgtaaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcacta 200  Q
    ||||||||||| ||||||||| |||||||||||||| ||||||||||||||        ||||||||||||||||||||||||||||||||||| |||||    
T  3402975 gatgtaaacgtcagttacttgctagtgttaactcttagtactgatgtgttctttttttggatatagtgattcttttttggatcgatatagtatatcacta 3402876  T
Q  201 ataagttccttttggatatagtgtagcattgatgtata 238  Q
    | ||||||||||||||||||||||||||||||||||||    
T  3402875 acaagttccttttggatatagtgtagcattgatgtata 3402838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 31226955 - 31227198
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagagga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  31226955 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccagatttggaagttgatttgtatcttgatgatgggaatggaggagagga 31227054  T
Q  101 gatgtaaacgttagttacttgttagtgttaactcttggtactgatgtgttc--nnnnnnnngatatagtgattcttttttggatcgatatagtatagcac 198  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||||||||           ||||||| ||||||||||||||||||||||||||||||    
T  31227055 gatgtaaatgttagttacttgttagtgttaactctttgtactgatgtgttctttttttttttatatagtaattcttttttggatcgatatagtatagcac 31227154  T
Q  199 taataagttccttttggatatagtgtagcattgatgtatagcac 242  Q
    ||| ||||||||||||||||||||||||||||||||||||||||    
T  31227155 taacaagttccttttggatatagtgtagcattgatgtatagcac 31227198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 14795624 - 14795865
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagagga 100  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  14795624 aaccgcttgatgatattggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgggaatgaaggagagga 14795723  T
Q  101 gatgtaaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcacta 200  Q
    ||| |||||||||||||||||||||||||||||||| ||| ||||||||||        |||||||||||||||||| ||||||||||||||||||||||    
T  14795724 gatataaacgttagttacttgttagtgttaactcttagtattgatgtgttctttttttggatatagtgattctttttcggatcgatatagtatagcacta 14795823  T
Q  201 ataagttccttttggatatagtgtagcattgatgtatagcac 242  Q
    | |||||||||||||||| |||||||||||||||||||||||    
T  14795824 acaagttccttttggatacagtgtagcattgatgtatagcac 14795865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 4 - 242
Target Start/End: Original strand, 41146225 - 41146462
Alignment:
Q  4 cgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagaggagat 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||| ||||||||||||||||||    
T  41146225 cgcttgatggtgttggaattgagttagcagagttgtctttggatgatccggatttggaagctgatttgtatcttgattatgggaatggaggagaggagat 41146324  T
Q  104 gtaaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcactaata 203  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||        ||||||||| |||||||||| |||||||||||||| |||||| |    
T  41146325 gtaaacgttagttacttgttagtgttaactcttagtactgatgtgttc-ttttttggatatagtgcttcttttttgaatcgatatagtataacactaaca 41146423  T
Q  204 agttccttttggatatagtgtagcattgatgtatagcac 242  Q
    |||||||||||||||||||||||||||||||||||||||    
T  41146424 agttccttttggatatagtgtagcattgatgtatagcac 41146462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 52572807 - 52573043
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagagga 100  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||| ||||||||||||| |    
T  52572807 aacctcttgatggtgttagaattgagttagcagagttgtctttggatgaaccatatttggaagctgatttgtatcttgatgatgggaatggaggagagta 52572906  T
Q  101 gatgtaaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcacta 200  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||        |||||||||     |||||||||||||||||||||||||||    
T  52572907 gatgtaaacgttagttacttgttagtgttaactcttagtactgatgtgttc-ttttttggatatagtg----ctttttggatcgatatagtatagcacta 52573001  T
Q  201 ataagttccttttggatatagtgtagcattgatgtatagcac 242  Q
    | ||||||||||||||||||||||||||||||||||||||||    
T  52573002 acaagttccttttggatatagtgtagcattgatgtatagcac 52573043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 105 - 237
Target Start/End: Complemental strand, 38492159 - 38492027
Alignment:
Q  105 taaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcactaataa 204  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||        ||||||| |||||||||||||||||||||||||||||||||| ||    
T  38492159 taaacgttagttacttgttagtgttaactcttagtaatgatgtgttctttttttggatatagggattcttttttggatcgatatagtatagcactaacaa 38492060  T
Q  205 gttccttttggatatagtgtagcattgatgtat 237  Q
    |||||||||||||||||||||||||||||||||    
T  38492059 gttccttttggatatagtgtagcattgatgtat 38492027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 52122440 - 52122363
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttg 78  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||| ||||||||||||||    
T  52122440 aaccgcttgatggtgttggaattgagttagcatagttgtctttgaatgaaccggattaggaagctgatttgtatcttg 52122363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 160 - 238
Target Start/End: Original strand, 28377272 - 28377351
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagcattgatgtata 238  Q
    ||||||||| |||||||||||||||||||||||||||||||| || |||| ||||||||||| | |||||||||||||||    
T  28377272 gatatagtgcttcttttttggatcgatatagtatagcactaacaatgttctttttggatataatatagcattgatgtata 28377351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 24784490 - 24784573
Alignment:
Q  20 aattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagaggagat 103  Q
    ||||||||||| | ||||||||||||||||||| |||||||||| || ||||||||||| |||||  |||||||||||| ||||    
T  24784490 aattgagttagtaaagttgtctttggatgaaccagatttggaagctggtttgtatcttgttgatggaaatggaggagagaagat 24784573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 103
Target Start/End: Original strand, 52721477 - 52721555
Alignment:
Q  25 agttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagaggagat 103  Q
    |||||| ||||||||||||||||||||| |||||| ||| || ||||||||||| |||||  |||||||||||||||||    
T  52721477 agttagtagagttgtctttggatgaaccagatttgaaagctggtttgtatcttgttgatggaaatggaggagaggagat 52721555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 5325340 - 5325279
Alignment:
Q  181 atcgatatagtatagcactaataagttccttttggatatagtgtagcattgatgtatagcac 242  Q
    |||||||||| ||| |||||| |||||||||||||||||| |||||||||||||||||||||    
T  5325340 atcgatatagcataacactaacaagttccttttggatataatgtagcattgatgtatagcac 5325279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 233
Target Start/End: Original strand, 5835205 - 5835279
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagcattgat 233  Q
    ||||||||| ||||||||| |||||||||||||||||| ||| || |||||||||||||||||| || |||||||    
T  5835205 gatatagtgcttctttttttgatcgatatagtatagcattaacaatgttccttttggatatagtataacattgat 5835279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 100
Target Start/End: Original strand, 39957818 - 39957886
Alignment:
Q  32 agagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagagga 100  Q
    ||||||||||||||||||||| |||||||||| |  ||||||||||| |||||  ||||||||||||||    
T  39957818 agagttgtctttggatgaaccagatttggaagctagtttgtatcttgttgatggaaatggaggagagga 39957886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 228
Target Start/End: Complemental strand, 36511809 - 36511742
Alignment:
Q  162 tatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagca 228  Q
    ||||||| |||||||||||||||||||| ||||||||||| || ||| |||||||||||||| |||||    
T  36511809 tatagtgcttcttttttggatcgatataatatagcactaagaatgtttcttttggatatagtatagca 36511742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 3109160 - 3109098
Alignment:
Q  161 atatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagt 222  Q
    |||||||| ||||||||| ||||||||||||||| |||||| || ||||||||||||||||||    
T  3109160 atatagtgtttcttttttagatcgatatagtataacactaacaatgttccttttggatatagt 3109098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 24793586 - 24793524
Alignment:
Q  161 atatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagt 222  Q
    |||||||| ||||||||| ||||||||||||||| |||||| || ||||||||||||||||||    
T  24793586 atatagtgtttcttttttagatcgatatagtataacactaacaatgttccttttggatatagt 24793524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 228
Target Start/End: Complemental strand, 44521901 - 44521833
Alignment:
Q  161 atatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagca 228  Q
    ||||| || ||||||||||||||||||||||||| || ||| || |||||||||||||||||| |||||    
T  44521901 atataatgcttcttttttggatcgatatagtataacattaacaatgttccttttggatatagtatagca 44521833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 1177227 - 1177286
Alignment:
Q  170 ttcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagca 228  Q
    ||||||||||||| |||||||||||||||||| || ||| |||||||||||||| |||||    
T  1177227 ttcttttttggattgatatagtatagcactaacaatgtttcttttggatatagtatagca 1177286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 228
Target Start/End: Complemental strand, 31946102 - 31946036
Alignment:
Q  162 tatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagca 228  Q
    ||||||| ||||||||||||||||||| |||||||||||| || ||||||||| |||||||| |||||    
T  31946102 tatagtgcttcttttttggatcgatat-gtatagcactaacaatgttccttttagatatagtatagca 31946036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 39957950 - 39958013
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagt 222  Q
    ||||||||| ||||||||| |||||||||||||||||||||| || |||| |||| ||||||||    
T  39957950 gatatagtgcttcttttttagatcgatatagtatagcactaacaatgttctttttagatatagt 39958013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 51859045 - 51859104
Alignment:
Q  170 ttcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagca 228  Q
    ||||||||||||||||||||||||| |||||| || ||| |||||||||||||| |||||    
T  51859045 ttcttttttggatcgatatagtataacactaacaatgtttcttttggatatagtatagca 51859104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 52721616 - 52721691
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagcattgatg 234  Q
    ||||||||| ||||||||| ||||||||||||||| |||||| || |||| ||||| ||||||| || ||||||||    
T  52721616 gatatagtgcttcttttttagatcgatatagtataacactaacaatgttctttttgaatatagtatatcattgatg 52721691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 55901004 - 55900929
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagcattgatg 234  Q
    |||||| || ||||||||||||||||||||||||| |||||| || |||| ||||||||||| | ||||| |||||    
T  55901004 gatataatgcttcttttttggatcgatatagtataacactaacaatgttcattttggatataatatagcactgatg 55900929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 36943932 - 36943994
Alignment:
Q  161 atatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagt 222  Q
    |||||||| ||||||||| |||||||||||||||  ||||| || ||||||||||||||||||    
T  36943932 atatagtgtttcttttttagatcgatatagtataatactaacaatgttccttttggatatagt 36943994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 24784634 - 24784703
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagca 228  Q
    ||||||||| ||||||||| ||| |||||||||||||||||  || |||| ||||||||||||| |||||    
T  24784634 gatatagtgcttcttttttagattgatatagtatagcactatcaatgttctttttggatatagtatagca 24784703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 228
Target Start/End: Complemental strand, 24823632 - 24823563
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagca 228  Q
    ||||||||| ||||||||| ||| |||||||||||||||||  || |||| ||||||||||||| |||||    
T  24823632 gatatagtgcttcttttttagattgatatagtatagcactatcaatgttctttttggatatagtatagca 24823563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 17892511 - 17892573
Alignment:
Q  161 atatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagt 222  Q
    |||||||| ||||||||| ||| ||||||||||| |||||| || |||||||||| |||||||    
T  17892511 atatagtgtttcttttttagattgatatagtataacactaacaatgttccttttgaatatagt 17892573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 49470559 - 49470613
Alignment:
Q  181 atcgatatagtatagcactaataa-gttccttttggatatagtgtagcattgatg 234  Q
    |||||||||||||  |||||| || |||||||||||||||||| |||||||||||    
T  49470559 atcgatatagtatgtcactaacaatgttccttttggatatagtatagcattgatg 49470613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 47607354 - 47607410
Alignment:
Q  173 ttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagca 228  Q
    ||||||||||||||||| |||||||| || || ||| |||||||||||||| |||||    
T  47607354 ttttttggatcgatataatatagcaccaacaatgtttcttttggatatagtatagca 47607410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 54433658 - 54433714
Alignment:
Q  5 gcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttgga 61  Q
    ||||||| ||||||||||||| ||||| ||||| ||||| |||||| |||| |||||    
T  54433658 gcttgattgtgttggaattgaattagctgagttatctttagatgaatcggagttgga 54433714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 52505324 - 52505084
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagagga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  52505324 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatga-ccggatttgaaagttgatttgtatcttgatgatgggaatggaggagagga 52505226  T
Q  101 gatgtaaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcacta 200  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||        |||||| |||||||||||||||||||||||||||| |||||    
T  52505225 gatgtaaacgttagttacttgttagtgttaactcttagtactgatgtgttctttttttggatataatgattcttttttggatcgatatagtataacacta 52505126  T
Q  201 ataagttccttttggatatagtgtagcattgatgtatagcac 242  Q
    | ||||||||||||||||||||||||||||||||||||||||    
T  52505125 acaagttccttttggatatagtgtagcattgatgtatagcac 52505084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 1679182 - 1678945
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagagga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  1679182 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatctgtatcttgatgatgggaatggaggagagga 1679083  T
Q  101 gatgtaaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcacta 200  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||||||        ||||||||||||||||||||||||||||||||||| |||||    
T  1679082 gatgtaaacgtcagttacttgttagtgttaactcttagtactgatgtgttctttttttggatatagtgattcttttttggatcgatatagtatatcacta 1678983  T
Q  201 ataagttccttttggatatagtgtagcattgatgtata 238  Q
    | | |||| ||||| |||||||||||||||||||||||    
T  1678982 acaggttcattttgaatatagtgtagcattgatgtata 1678945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 48123441 - 48123682
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagagga 100  Q
    ||||||||||||||||| ||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  48123441 aaccgcttgatggtgttcgaatttagttagtagagttgtctttggatgaaccagatttggaagttgatttgtatcttgatgatgagaatggaggagagga 48123540  T
Q  101 gatgtaaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcacta 200  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| ||        |||||||||||||||||||| ||||| |||||||| ||| |    
T  48123541 gatgtaaacgttagttacttgttagtgttaactcttagtactgatgtggtcattttttggatatagtgattcttttttgaatcgacatagtataacacaa 48123640  T
Q  201 ataagttccttttggatatagtgtagcattgatgtatagcac 242  Q
    | ||||||||||||||||||||||||||||||||||||||||    
T  48123641 acaagttccttttggatatagtgtagcattgatgtatagcac 48123682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 25936579 - 25936339
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagagga 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||| || |||| ||    
T  25936579 aaccgcttaatggtgttggaattgagttagcagagttgtctttggatgaaccagatttagaagctgatttgtatcttgatgatgagaatagatgagatga 25936480  T
Q  101 gatgtaaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcacta 200  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||        ||||||||| |||||||||||||||||||||||||||||||    
T  25936479 gatgtaaacgttagttacttgttagtgttaactcttagtactgatgtgttc-ttttttggatatagtgcttcttttttggatcgatatagtatagcacta 25936381  T
Q  201 ataagttccttttggatatagtgtagcattgatgtatagcac 242  Q
    | ||||||||||||||||||||||||||||||||||||||||    
T  25936380 acaagttccttttggatatagtgtagcattgatgtatagcac 25936339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 45532563 - 45532323
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagagga 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||| |||||||||||||||    
T  45532563 aaccgcttgatgatgttggaattgagttagcagagttgtctttggatgaacttgatttggaagctgatttgtatcttgatgatgggaatggaggagagga 45532464  T
Q  101 gatgtaaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcacta 200  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||||||||        ||||||||| ||||||||||||| |||||| ||||||||||    
T  45532463 gatgtaaatgttagttacttgttagtgttaactcttagtactgatgtgttc-ttttttggatatagtgcttcttttttggattgatataatatagcacta 45532365  T
Q  201 ataagttccttttggatatagtgtagcattgatgtatagcac 242  Q
    | ||||||||||||||||||||||||||||||||||||||||    
T  45532364 acaagttccttttggatatagtgtagcattgatgtatagcac 45532323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 28705354 - 28705594
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagagga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||    
T  28705354 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccgtatttggaagttgatctgtatcttgatgatgggaatggaggagagga 28705453  T
Q  101 gatgtaaacgttagttacttgttagtgtta---actcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagca 197  Q
    ||||||||||| ||||||||||||||||||   ||| || |||| |||||||||         |||||||||||||||||||||||||||||| ||| ||    
T  28705454 gatgtaaacgtcagttacttgttagtgttaactacttttagtacggatgtgttctttttttgaatatagtgattcttttttggatcgatatagaatatca 28705553  T
Q  198 ctaataagttccttttggatatagtgtagcattgatgtata 238  Q
    |||| |||||| |||||||||||||||||||||||||||||    
T  28705554 ctaacaagttcattttggatatagtgtagcattgatgtata 28705594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 10224652 - 10224427
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagagga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||    
T  10224652 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccagatttggaagttgatttgtatcttgatgatgggaatggaggagaaga 10224553  T
Q  101 gatgtaaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcacta 200  Q
    |||||||||||||||||||||||||||||||||||| ||         |||        ||||||||||||||||||||||||||| ||||||| |||||    
T  10224552 gatgtaaacgttagttacttgttagtgttaactcttagt---------ttctttttttggatatagtgattcttttttggatcgatttagtataacacta 10224462  T
Q  201 ataagttccttttggatatagtgtagcattgatgt 235  Q
    | |||||||||||||||||| ||||||||||||||    
T  10224461 acaagttccttttggatataatgtagcattgatgt 10224427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 65 - 238
Target Start/End: Complemental strand, 22610713 - 22610541
Alignment:
Q  65 tgatttgtatcttgatgatgagaatggaggagaggagatgtaaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatat 164  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||        |||||    
T  22610713 tgatttgtatcttgatgatgggaatggaggagaggagatgtaaacgttagttacttgttagtgttaactcttagtactgatgtgttc-ttttttggatat 22610615  T
Q  165 agtgattcttttttggatcgatatagtatagcactaataagttccttttggatatagtgtagcattgatgtata 238  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  22610614 agtgcttcttttttggatcgatatagtatagcactaacaagttccttttggatatagtgtagcattgatgtata 22610541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 105 - 238
Target Start/End: Complemental strand, 37996688 - 37996555
Alignment:
Q  105 taaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcactaataa 204  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||        |||||||||||||||||||||||||||||||||||||||||| ||    
T  37996688 taaacgttagttacttgttagtgttaactcttagtactgatgtgttctttttttggatatagtgattcttttttggatcgatatagtatagcactaacaa 37996589  T
Q  205 gttccttttggatatagtgtagcattgatgtata 238  Q
    ||||||||||||||||||||||||||||||||||    
T  37996588 gttccttttggatatagtgtagcattgatgtata 37996555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 105 - 238
Target Start/End: Original strand, 7327945 - 7328078
Alignment:
Q  105 taaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcactaataa 204  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||        ||||||||||||||||||||||||||||||||||| |||||| ||    
T  7327945 taaacgttagttacttgttagtgttaactcttagtactgatgtgttctttttttggatatagtgattcttttttggatcgatatagtataacactaacaa 7328044  T
Q  205 gttccttttggatatagtgtagcattgatgtata 238  Q
    ||||||||||||||||||||||||||||||||||    
T  7328045 gttccttttggatatagtgtagcattgatgtata 7328078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 2567269 - 2567186
Alignment:
Q  20 aattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagaggagat 103  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||| |||||  |||||||||||||||||    
T  2567269 aattgagttagtagagttgtctttggatgaaccagatttggaagttggtttgtatcttgttgatggaaatggaggagaggagat 2567186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 1528809 - 1528879
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataagttccttttggatatagtgtagcattgatg 234  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| |||    ||||||||||||||||||    
T  1528809 gatatagtgattcttttttggatcgatatagtatagcactaacaagttcattt----tatagtgtagcattgatg 1528879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 21006363 - 21006280
Alignment:
Q  20 aattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagaggagat 103  Q
    ||||||||||| ||||||||||||||||||||| |||||||||| || ||||||| ||| |||||  ||||| |||||||||||    
T  21006363 aattgagttagtagagttgtctttggatgaaccagatttggaagctggtttgtatattgttgatggaaatggtggagaggagat 21006280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 52684445 - 52684528
Alignment:
Q  20 aattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagaggagat 103  Q
    ||||||||||| |||||||||||||||||||||  |||||||||  | ||||||||||| |||||  |||||||||||||||||    
T  52684445 aattgagttagtagagttgtctttggatgaaccaaatttggaagcagttttgtatcttgttgatggaaatggaggagaggagat 52684528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 160 - 233
Target Start/End: Original strand, 22311105 - 22311179
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagcattgat 233  Q
    ||||||||| |||||||||||||||||||||||||||| ||| || |||||||||||||||||| || |||||||    
T  22311105 gatatagtgcttcttttttggatcgatatagtatagcattaacaatgttccttttggatatagtataacattgat 22311179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 160 - 233
Target Start/End: Complemental strand, 50287089 - 50287015
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagcattgat 233  Q
    ||||||||| ||||||||||||||||||||||||||||  ||||| |||||||||||||||||| || |||||||    
T  50287089 gatatagtgtttcttttttggatcgatatagtatagcatcaataatgttccttttggatatagtataacattgat 50287015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 30787417 - 30787354
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagt 222  Q
    ||||||||| |||||||||||||||||||||||||||||||| || ||||||||| ||||||||    
T  30787417 gatatagtgcttcttttttggatcgatatagtatagcactaacaatgttccttttagatatagt 30787354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 233
Target Start/End: Original strand, 35390125 - 35390199
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagcattgat 233  Q
    ||||||||| ||||||||||||||||||||||||| || ||| || |||||||||||||||||| || |||||||    
T  35390125 gatatagtgcttcttttttggatcgatatagtataacattaacaatgttccttttggatatagtataacattgat 35390199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 13353051 - 13352988
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagt 222  Q
    ||||||||| |||||||||||||||| | ||||||||||||| || ||||||||||||||||||    
T  13353051 gatatagtgcttcttttttggatcgacacagtatagcactaacaatgttccttttggatatagt 13352988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 20510012 - 20509937
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagcattgatg 234  Q
    ||||||||| |||||||||||||||| |||||||| |||||| || |||| ||||||||||||| || ||||||||    
T  20510012 gatatagtgcttcttttttggatcgacatagtataacactaacaatgttcattttggatatagtatatcattgatg 20509937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 1528733 - 1528779
Alignment:
Q  105 taaacgttagttacttgttagtgttaactcttggtactgatgtgttc 151  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||||    
T  1528733 taaacgttggttacttgttagtgttaactcttggtattgatgtgttc 1528779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 222
Target Start/End: Original strand, 48334154 - 48334208
Alignment:
Q  169 attcttttttggatcgatatagtatagcactaataa-gttccttttggatatagt 222  Q
    ||||||||||||||||||||||||||||||||| || |||| |||||||||||||    
T  48334154 attcttttttggatcgatatagtatagcactaacaatgttctttttggatatagt 48334208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 222
Target Start/End: Complemental strand, 19349480 - 19349419
Alignment:
Q  162 tatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagt 222  Q
    ||||||| |||||||||||||||||||||||||||||| | || ||| ||||||||||||||    
T  19349480 tatagtgcttcttttttggatcgatatagtatagcactgacaatgtttcttttggatatagt 19349419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 48333212 - 48333265
Alignment:
Q  170 ttcttttttggatcgatatagtatagcactaataa-gttccttttggatatagt 222  Q
    |||||||||||||||||||||||||||||||| ||  |||||||||||||||||    
T  48333212 ttcttttttggatcgatatagtatagcactaacaatattccttttggatatagt 48333265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 238
Target Start/End: Original strand, 52121537 - 52121616
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagcattgatgtata 238  Q
    ||||||||| |  ||||||||||||||||| ||||||||||| || ||||||||||||| |||| ||  |||||||||||    
T  52121537 gatatagtgctctttttttggatcgatataatatagcactaacaatgttccttttggatgtagtataatattgatgtata 52121616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 52684589 - 52684652
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagt 222  Q
    ||||||||| ||||||||| ||||||||||||||| |||||| || |||| |||||||||||||    
T  52684589 gatatagtgcttcttttttagatcgatatagtataacactaacaatgttctttttggatatagt 52684652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 233
Target Start/End: Complemental strand, 28882422 - 28882348
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagcattgat 233  Q
    ||||||||| ||||||||  |||||||||||||||||| ||| || ||| |||||||||||||| || |||||||    
T  28882422 gatatagtgcttctttttatgatcgatatagtatagcattaacaatgtttcttttggatatagtataacattgat 28882348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 234
Target Start/End: Original strand, 28968774 - 28968848
Alignment:
Q  161 atatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagcattgatg 234  Q
    |||||||| ||||||||| |||||||||| |||| |||||| || |||| ||||||||||||| || ||||||||    
T  28968774 atatagtgtttcttttttagatcgatataatataacactaacaatgttcattttggatatagtataacattgatg 28968848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 234
Target Start/End: Original strand, 47642269 - 47642343
Alignment:
Q  161 atatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagcattgatg 234  Q
    |||||| | ||||||||| ||||||||||||||| |||||| || |||| ||||||||||||| || ||||||||    
T  47642269 atatagcgtttcttttttagatcgatatagtataacactaacaatgttctttttggatatagtataacattgatg 47642343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 228
Target Start/End: Complemental strand, 21006219 - 21006150
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagca 228  Q
    |||||| || ||||||||| ||||||||||||||| |||||| || |||| ||||||||||||| |||||    
T  21006219 gatataatgcttcttttttagatcgatatagtataacactaacaatgttctttttggatatagtatagca 21006150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 222
Target Start/End: Complemental strand, 22289597 - 22289536
Alignment:
Q  162 tatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagt 222  Q
    ||||||| ||||||||||||||||||||||| | |||||| || ||| ||||||||||||||    
T  22289597 tatagtgcttcttttttggatcgatatagtacaacactaacaatgtttcttttggatatagt 22289536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 42229914 - 42229967
Alignment:
Q  170 ttcttttttggatcgatatagtatagcactaataa-gttccttttggatatagt 222  Q
    |||||||||| ||||||||||||||||||||| ||  |||||||||||||||||    
T  42229914 ttcttttttgaatcgatatagtatagcactaacaatattccttttggatatagt 42229967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 50523015 - 50522965
Alignment:
Q  3 ccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccg 53  Q
    |||||||||| |||||||||||| ||||| ||||| ||||| |||||||||    
T  50523015 ccgcttgatgttgttggaattgaattagctgagttatctttagatgaaccg 50522965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 201
Target Start/End: Original strand, 19421678 - 19421719
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaa 201  Q
    ||||||||| |||||||||| |||||||||||||| ||||||    
T  19421678 gatatagtgcttcttttttgaatcgatatagtataacactaa 19421719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 220
Target Start/End: Complemental strand, 19878958 - 19878897
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatata 220  Q
    |||||| || |||||||||||||||||||| |||| |||||| ||  |||||||||||||||    
T  19878958 gatataatgtttcttttttggatcgatataatatatcactaacaatattccttttggatata 19878897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 201
Target Start/End: Complemental strand, 21157584 - 21157543
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaa 201  Q
    ||||||||| ||||||||| ||| ||||||||||||||||||    
T  21157584 gatatagtgcttctttttttgattgatatagtatagcactaa 21157543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 29916034 - 29916095
Alignment:
Q  162 tatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagt 222  Q
    ||||||| |||| |||| ||||||||||||||| |||||| || |||| |||||||||||||    
T  29916034 tatagtgcttctgttttagatcgatatagtataacactaacaatgttcattttggatatagt 29916095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 29965187 - 29965248
Alignment:
Q  162 tatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagt 222  Q
    ||||||| |||| |||| ||||||||||||||| |||||| || |||| |||||||||||||    
T  29965187 tatagtgcttctgttttagatcgatatagtataacactaacaatgttcattttggatatagt 29965248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 25701046 - 25701094
Alignment:
Q  181 atcgatatagtatagcactaataa-gttccttttggatatagtgtagca 228  Q
    |||||||||||||| |||||| || |||||||||||||||||| |||||    
T  25701046 atcgatatagtataacactaacaatgttccttttggatatagtatagca 25701094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 28548296 - 28548348
Alignment:
Q  170 ttcttttttggatcgatatagtatagcactaataa-gttccttttggatatag 221  Q
    ||||||||||||||||||||| |||||||||| || |||| ||||| ||||||    
T  28548296 ttcttttttggatcgatatagcatagcactaacaatgttctttttgaatatag 28548348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 41741948 - 41741908
Alignment:
Q  162 tatagtgattcttttttggatcgatatagtatagcactaat 202  Q
    ||||||| ||||||||| |||||||||||||||| ||||||    
T  41741948 tatagtgtttcttttttagatcgatatagtatagtactaat 41741908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 40096274 - 40096511
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagagga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  40096274 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatctgtatcttgatgatgggaatggaggagagga 40096373  T
Q  101 gatgtaaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcacta 200  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||||||        |||||||||||| |||||||||||||||||||||| |||||    
T  40096374 gatgtaaacgtcagttacttgttagtgttaactcttagtactgatgtgttctttttttggatatagtgatttttttttggatcgatatagtatatcacta 40096473  T
Q  201 ataagttccttttggatatagtgtagcattgatgtata 238  Q
    | |||||| |||||||||||||||||||||||||||||    
T  40096474 acaagttcattttggatatagtgtagcattgatgtata 40096511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 11830305 - 11830545
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagagga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||| |||||||||||||||    
T  11830305 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccagatttgaaagctgatttgtatcttgatgatgggaatggaggagagga 11830404  T
Q  101 gatgtaaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcacta 200  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||||        |||||| || |||||||||||||||||||||||||||||||    
T  11830405 gatgtaaacgttagttacttgttagtgttaactcttagtactgacgtgttc-ttttttggatataatgcttcttttttggatcgatatagtatagcacta 11830503  T
Q  201 ataagttccttttggatatagtgtagcattgatgtatagcac 242  Q
    | |||||||||||||||||| |||||||||||||||||||||    
T  11830504 acaagttccttttggatataatgtagcattgatgtatagcac 11830545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 36661081 - 36661321
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagagga 100  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||    
T  36661081 aaccgtttgatggtgttggaattgagttagaagagttgtctttggatgaaccggatttggaagctgatttgtatcttgatgatgggaatgcaggagagga 36661180  T
Q  101 gatgtaaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcacta 200  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||        |||| |||| |||||||||||||||||| |||||| |||||    
T  36661181 gatgtaaacgttagttacttgttagtgttaactcttagtactgatgtgttc-ttttttggatacagtgcttcttttttggatcgataaagtataacacta 36661279  T
Q  201 ataagttccttttggatatagtgtagcattgatgtatagcac 242  Q
    | ||||||||||||||||||||||||||||||||||||||||    
T  36661280 acaagttccttttggatatagtgtagcattgatgtatagcac 36661321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 27397618 - 27397379
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagagga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||| |||||||||||||||    
T  27397618 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttgaaagctaatttgtatcttgatgatgggaatggaggagagga 27397519  T
Q  101 gatgtaaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcacta 200  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||| ||         |||||| || |||||||||||||||||||| ||||||||||    
T  27397518 gatgtaaatgttagttacttgttagtgttaactcttagtactgatgtttt--ttttttggatataatgcttcttttttggatcgatatattatagcacta 27397421  T
Q  201 ataagttccttttggatatagtgtagcattgatgtatagcac 242  Q
    | |||||||||||| |||||||||||||||||||||||||||    
T  27397420 acaagttccttttgaatatagtgtagcattgatgtatagcac 27397379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 105 - 238
Target Start/End: Original strand, 48163648 - 48163781
Alignment:
Q  105 taaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcactaataa 204  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||        |||||||||||||||||||||||||||||||||||||||||| ||    
T  48163648 taaacgttagttacttgttagtgttaactcttagtactgatgtgttctttttttggatatagtgattcttttttggatcgatatagtatagcactaacaa 48163747  T
Q  205 gttccttttggatatagtgtagcattgatgtata 238  Q
    ||||||||||||||||||||||||||||||||||    
T  48163748 gttccttttggatatagtgtagcattgatgtata 48163781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 105 - 238
Target Start/End: Original strand, 27354161 - 27354294
Alignment:
Q  105 taaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcactaataa 204  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||        |||||||||||||||||||||||||||||| ||||||||||| ||    
T  27354161 taaacgttagttacttgttagtgttaactcttagtactgatgtgttctttttttggatatagtgattcttttttggatcgatataatatagcactaacaa 27354260  T
Q  205 gttccttttggatatagtgtagcattgatgtata 238  Q
    ||||||||||||||||||||||||||||||||||    
T  27354261 gttccttttggatatagtgtagcattgatgtata 27354294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 105 - 238
Target Start/End: Complemental strand, 27555244 - 27555111
Alignment:
Q  105 taaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcactaataa 204  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||        ||||||||||||||||||||||||||||||||||| |||||| ||    
T  27555244 taaacgttagttacttgttagtgttaactcttagtactgatgtgttctttttttggatatagtgattcttttttggatcgatatagtataacactaacaa 27555145  T
Q  205 gttccttttggatatagtgtagcattgatgtata 238  Q
    ||||||||||||||||||||||||||||||||||    
T  27555144 gttccttttggatatagtgtagcattgatgtata 27555111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 105 - 238
Target Start/End: Original strand, 16851023 - 16851156
Alignment:
Q  105 taaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcactaataa 204  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||        ||||||||||||||||||||||||||||||||||| |||||| ||    
T  16851023 taaacgttagttacttgttagtgttaactcttagtactgatgtgttctttttttggatatagtgattcttttttggatcgatatagtatatcactaacaa 16851122  T
Q  205 gttccttttggatatagtgtagcattgatgtata 238  Q
    ||| ||||||||||||||||||||||||||||||    
T  16851123 gtttcttttggatatagtgtagcattgatgtata 16851156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 11058547 - 11058646
Alignment:
Q  4 cgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagaggagat 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||| ||||    
T  11058547 cgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagctgatttgtatcttgatgatgggaatgaaggagagaagat 11058646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 56 - 136
Target Start/End: Complemental strand, 47238488 - 47238408
Alignment:
Q  56 tttggaagttgatttgtatcttgatgatgagaatggaggagaggagatgtaaacgttagttacttgttagtgttaactctt 136  Q
    |||||||| |||||||||||||||||||| |||||| |||||||||||||||| ||||||||| |||||||||||||||||    
T  47238488 tttggaagctgatttgtatcttgatgatgggaatgggggagaggagatgtaaaagttagttacatgttagtgttaactctt 47238408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 160 - 238
Target Start/End: Complemental strand, 1042924 - 1042845
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagcattgatgtata 238  Q
    ||||||||| ||||||||||||||||||||||||| |||||| || |||||||||||||||| | |||||||||||||||    
T  1042924 gatatagtgcttcttttttggatcgatatagtataacactaacaatgttccttttggatataatatagcattgatgtata 1042845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 160 - 238
Target Start/End: Complemental strand, 26773437 - 26773358
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagcattgatgtata 238  Q
    |||||| || |||||||||||||||||||||||||||||||| || ||||| |||||||||||| |||||||||||||||    
T  26773437 gatataatgcttcttttttggatcgatatagtatagcactaacaatgttccgtttggatatagtatagcattgatgtata 26773358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 25 - 103
Target Start/End: Complemental strand, 9283856 - 9283778
Alignment:
Q  25 agttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagaggagat 103  Q
    |||||| ||||||||||||||||||||| |||||||||| || ||||||||||| |||||  |||||||||||||||||    
T  9283856 agttagtagagttgtctttggatgaaccagatttggaagctggtttgtatcttgttgatggaaatggaggagaggagat 9283778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 25 - 103
Target Start/End: Original strand, 25969627 - 25969705
Alignment:
Q  25 agttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagaggagat 103  Q
    |||||| ||||||||||||||||||||| |||||||||| || ||||||||||| |||||  |||||||||||||||||    
T  25969627 agttagtagagttgtctttggatgaaccagatttggaagctggtttgtatcttgttgatggaaatggaggagaggagat 25969705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 23078965 - 23078890
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagcattgatg 234  Q
    ||||||||| |||||||||||||||||||||||||||||||| || ||||||||| |||||||| ||||| |||||    
T  23078965 gatatagtgcttcttttttggatcgatatagtatagcactaacaatgttcctttttgatatagtatagcactgatg 23078890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 162 - 228
Target Start/End: Complemental strand, 23970002 - 23969935
Alignment:
Q  162 tatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagca 228  Q
    ||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||    
T  23970002 tatagtgcttcttttttggatcgatatagtatagcactaacaatgttccttttggatatagtatagca 23969935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 162 - 228
Target Start/End: Original strand, 48153784 - 48153851
Alignment:
Q  162 tatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagca 228  Q
    ||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||    
T  48153784 tatagtgcttcttttttggatcgatatagtatagcactaacaatgttccttttggatatagtatagca 48153851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 160 - 233
Target Start/End: Complemental strand, 16564097 - 16564023
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagcattgat 233  Q
    ||||||||| |||||||||||||||||||||||||||| ||| || |||||||||||||||||| ||| ||||||    
T  16564097 gatatagtgcttcttttttggatcgatatagtatagcattaacaatgttccttttggatatagtatagtattgat 16564023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 160 - 233
Target Start/End: Original strand, 16601565 - 16601639
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagcattgat 233  Q
    ||||||||| |||||||||||||||||||||||||||| ||| || |||||||||||||||||| ||| ||||||    
T  16601565 gatatagtgcttcttttttggatcgatatagtatagcattaacaatgttccttttggatatagtatagtattgat 16601639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 103
Target Start/End: Complemental strand, 47720083 - 47720005
Alignment:
Q  25 agttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagaggagat 103  Q
    |||||| |||||||||||||||||| || |||||||||| || ||||||||||| |||||  |||||||||||||||||    
T  47720083 agttagtagagttgtctttggatgagccagatttggaagctggtttgtatcttgttgatggaaatggaggagaggagat 47720005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 160 - 242
Target Start/End: Complemental strand, 47238094 - 47238012
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagcattgatgtatagcac 242  Q
    ||||||||| |||||||||| ||||||||||||||||| ||| || || |||||||||| |||| |||||||||||||||||||    
T  47238094 gatatagtgcttcttttttgaatcgatatagtatagcattaacaatgtcccttttggatgtagt-tagcattgatgtatagcac 47238012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 234
Target Start/End: Complemental strand, 1400123 - 1400049
Alignment:
Q  161 atatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagcattgatg 234  Q
    |||||||| ||||||||| ||||||||||||||| |||||| || |||||||||||||||||| || ||||||||    
T  1400123 atatagtgtttcttttttagatcgatatagtataacactaacaatgttccttttggatatagtataacattgatg 1400049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 103
Target Start/End: Complemental strand, 9250304 - 9250227
Alignment:
Q  25 agttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagaggagat 103  Q
    |||||| ||||||| ||||||||||||| |||||||||| || ||||||||||| |||||  |||||||||||||||||    
T  9250304 agttagtagagttg-ctttggatgaaccagatttggaagctggtttgtatcttgttgatggaaatggaggagaggagat 9250227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 26973296 - 26973357
Alignment:
Q  162 tatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagt 222  Q
    ||||||| |||||||||||||||||||||||||||||||| || ||| ||||||||||||||    
T  26973296 tatagtgcttcttttttggatcgatatagtatagcactaacaatgtttcttttggatatagt 26973357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 160 - 238
Target Start/End: Original strand, 8029071 - 8029150
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagcattgatgtata 238  Q
    ||||||||  |||||||||| ||||||||| ||||||||||| || ||| ||||| |||||||| |||||||||||||||    
T  8029071 gatatagtacttcttttttgaatcgatatactatagcactaacaatgtttcttttagatatagtatagcattgatgtata 8029150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 19820854 - 19820791
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagt 222  Q
    ||||||||| |||||||| | ||||||||||||||||||||| || ||||||||||||||||||    
T  19820854 gatatagtgcttctttttcgaatcgatatagtatagcactaacaatgttccttttggatatagt 19820791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 33454329 - 33454404
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagcattgatg 234  Q
    ||||||||| ||||||||||||||||||||||||| |||||| || |||| ||||||||||| | ||||| |||||    
T  33454329 gatatagtgcttcttttttggatcgatatagtataacactaacaatgttcattttggatataatatagcactgatg 33454404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 237
Target Start/End: Original strand, 19510887 - 19510965
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagcattgatgtat 237  Q
    ||||||||| |||||| ||||||||||||| |||| |||||  || |||||||||||||||||| || |||||||||||    
T  19510887 gatatagtgcttctttcttggatcgatataatataacactagcaatgttccttttggatatagtataacattgatgtat 19510965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 35160124 - 35160194
Alignment:
Q  163 atagtgattcttttttggatcgatatagtatagcactaat-----aagttccttttggatatagtgtagca 228  Q
    |||||| |||||||||||||||||||||||||||||||||     | |||||||||||||||||| |||||    
T  35160124 atagtgcttcttttttggatcgatatagtatagcactaattaacaatgttccttttggatatagtatagca 35160194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 233
Target Start/End: Original strand, 4291946 - 4292006
Alignment:
Q  174 tttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagcattgat 233  Q
    ||||||||||||||||||||| || ||| || |||||||||||||||||| ||||||||||    
T  4291946 tttttggatcgatatagtataacattaacaatgttccttttggatatagtatagcattgat 4292006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 21409637 - 21409696
Alignment:
Q  170 ttcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagca 228  Q
    |||||||||||||||||||||||||||||||| ||  || |||||||||||||| |||||    
T  21409637 ttcttttttggatcgatatagtatagcactaacaatatttcttttggatatagtatagca 21409696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 36763651 - 36763572
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaat-----aagttccttttggatatagtgtagcattgatg 234  Q
    |||||||||  |||||||||||||||||||||||| |||||||     | |||||||||||||||||| ||||| |||||    
T  36763651 gatatagtgcctcttttttggatcgatatagtataacactaattaacaatgttccttttggatatagtatagcactgatg 36763572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 15878279 - 15878217
Alignment:
Q  161 atatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagt 222  Q
    |||||||| ||||||||| ||||||||||||||| |||||| || |||| |||||||||||||    
T  15878279 atatagtgtttcttttttagatcgatatagtataacactaacaatgttcattttggatatagt 15878217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 38064929 - 38064999
Alignment:
Q  160 gatatagtgattctttt-ttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagca 228  Q
    ||||||||| ||||||| ||||||||||||| |||| |||||| || |||||||||||||||||| |||||    
T  38064929 gatatagtgcttctttttttggatcgatataatataacactaacaatgttccttttggatatagtatagca 38064999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 36413609 - 36413669
Alignment:
Q  162 tatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagt 222  Q
    ||||||| |||||||||| |||||||||||||| |||||| || ||||||||||||||||||    
T  36413609 tatagtgcttcttttttg-atcgatatagtataacactaacaatgttccttttggatatagt 36413669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 201
Target Start/End: Complemental strand, 554766 - 554727
Alignment:
Q  162 tatagtgattcttttttggatcgatatagtatagcactaa 201  Q
    ||||||| ||||||||||||||||||||||||| ||||||    
T  554766 tatagtgcttcttttttggatcgatatagtataacactaa 554727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 61
Target Start/End: Original strand, 25557733 - 25557788
Alignment:
Q  6 cttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttgga 61  Q
    |||||||||||||||||||| ||||| ||||| ||||| |||||||| || |||||    
T  25557733 cttgatggtgttggaattgaattagctgagttatctttagatgaaccagagttgga 25557788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 44269979 - 44270042
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagt 222  Q
    ||||| ||| |||||||||  |||||||||||||| |||||| || ||||||||||||||||||    
T  44269979 gatatggtgcttcttttttttatcgatatagtataacactaacaatgttccttttggatatagt 44270042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 44107 - 43866
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagagga 100  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  44107 aaccgcttgatgatattggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgggaatgaaggagagga 44008  T
Q  101 gatgtaaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcacta 200  Q
    ||| |||||||||||||||||||||||||||||||| ||| ||||||||||        |||||||||||||||||| ||||||||||||||||||||||    
T  44007 gatataaacgttagttacttgttagtgttaactcttagtattgatgtgttctttttttggatatagtgattctttttcggatcgatatagtatagcacta 43908  T
Q  201 ataagttccttttggatatagtgtagcattgatgtatagcac 242  Q
    | |||||||||||||||| |||||||||||||||||||||||    
T  43907 acaagttccttttggatacagtgtagcattgatgtatagcac 43866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 41585 - 41360
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagagga 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||| |||||  |||| |||||||||    
T  41585 aacctcttgatggtgttggaattgagttagcagagttgtctttggatgaaccgaatttgcaagctgatttgtatcttgctgatggaaatgaaggagagga 41486  T
Q  101 gatgtaaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagcacta 200  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||||        ||||||||| ||||||||||||||||||||||||| |||||    
T  41485 gatgtaaacgttagttacctgttagtgttaactcttagtactgatgtgttc-ttttttggatatagtgcttcttttttggatcgatatagtataacacta 41387  T
Q  201 ataagttccttttggatatagtgtagc 227  Q
    | |||||||||||||||||| ||||||    
T  41386 acaagttccttttggatataatgtagc 41360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 27287 - 27092
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttgatgatgagaatggaggagagga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| | |||||||||||||||||| |||||||||||||||    
T  27287 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccagatttgaaagataatttgtatcttgatgatgggaatggaggagagga 27188  T
Q  101 gatgtaaacgttagttacttgttagtgttaactcttggtactgatgtgttcnnnnnnnngatatagtgattcttttttggatcgatatagtatagca 197  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||        ||||| ||| ||||||||||||||||||||||||||||    
T  27187 gatgtaaacgttagttacttgttagtgttaactcttagtactgatgtgttc-ttttttggatatggtgcttcttttttggatcgatatagtatagca 27092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0640 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0640
Description:

Target: scaffold0640; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 7658 - 7581
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttg 78  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||    
T  7658 aaccgcttgatggtgttggaattgagttagcagagttgtctttgaatgaaccggattaggaagctgatttgtatcttg 7581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 25120 - 25043
Alignment:
Q  1 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccggatttggaagttgatttgtatcttg 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||    
T  25120 aaccgcttgatggtgttggaattgagttagcagagttgtctttggatgaaccagattaggaagctgatttgtatcttg 25043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 233
Target Start/End: Original strand, 5906 - 5980
Alignment:
Q  160 gatatagtgattcttttttggatcgatatagtatagcactaataa-gttccttttggatatagtgtagcattgat 233  Q
    ||||||||| ||||||||| ||| ||||||||||| || ||| || ||||||||| |||||||| ||||||||||    
T  5906 gatatagtgcttctttttttgattgatatagtataacattaacaatgttcctttttgatatagtatagcattgat 5980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University