View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6965_low_27 (Length: 245)
Name: NF6965_low_27
Description: NF6965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6965_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 27906428 - 27906658
Alignment:
| Q |
1 |
atagctacacggtacaattcaggagtattgttgtaagatgaaacgtagtactatataaatgacttgtaacagtgtaaaccctaattcactcaactaatat |
100 |
Q |
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| T |
27906428 |
atagctacacggtacaattcaggagtattgttgtaagatgaaacgtagtactatataaatgacttgtaacagtgtaaaccctaattcactcaactaatat |
27906527 |
T |
|
| Q |
101 |
acaacaccatagcttatagctgtcctagaggcgctgaggtaggcataattaaccaaaccgggtaaacaaactatcatgttcattgtcatgcaattttctt |
200 |
Q |
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| T |
27906528 |
acaacactatagcttatagctgtcctagaggcgctgaggtaggcataattaaccaaaccgggtaaacaaactatcatgttcattgtcatgcaattttctt |
27906627 |
T |
|
| Q |
201 |
ttctttagtcttctgttactatagctgatgt |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
27906628 |
ttctttagtcttctgttactatagctgatgt |
27906658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 5949026 - 5948949
Alignment:
| Q |
25 |
gtattgttgtaagatgaaacgtagtactatataaatgacttgtaacagtgtaaaccctaattcactcaactaatatac |
102 |
Q |
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| T |
5949026 |
gtattgttgtaatatgaaccgtagtactatatatatggcttgtaacactgtaaacactaattcactcaagtaatatac |
5948949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 34940175 - 34940258
Alignment:
| Q |
10 |
cggtacaattcaggagtattgttgtaagatgaaacgtagtactatataaatgacttgtaacagtgtaaaccctaattcactcaa |
93 |
Q |
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| T |
34940175 |
cggtacagttcaggggtattgttctaatctggaccgtagtactatatatatggcttgtaactttgtaaaccttaattcactcaa |
34940258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 42 - 101
Target Start/End: Original strand, 38970071 - 38970130
Alignment:
| Q |
42 |
aacgtagtactatataaatgacttgtaacagtgtaaaccctaattcactcaactaatata |
101 |
Q |
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||||||||||||||| ||| ||||||||| ||||||||||||||||||||| ||||||| |
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| T |
38970071 |
aacgtagtactatatctatggcttgtaacactgtaaaccctaattcactcaagtaatata |
38970130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 8808245 - 8808196
Alignment:
| Q |
52 |
tatataaatgacttgtaacagtgtaaaccctaattcactcaactaatata |
101 |
Q |
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|||||| ||||||||||||| |||||||||||| |||||||| ||||||| |
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| T |
8808245 |
tatatatatgacttgtaacaatgtaaaccctaactcactcaagtaatata |
8808196 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 100
Target Start/End: Complemental strand, 36851135 - 36851097
Alignment:
| Q |
62 |
acttgtaacagtgtaaaccctaattcactcaactaatat |
100 |
Q |
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| T |
36851135 |
acttgtaacattgtaaaccctaattcactcaaataatat |
36851097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 28820735 - 28820787
Alignment:
| Q |
49 |
tactatataaatgacttgtaacagtgtaaaccctaattcactcaactaatata |
101 |
Q |
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||||||||| ||| |||||||| ||||||| ||||||||||||| ||||||| |
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| T |
28820735 |
tactatatatatggtttgtaacactgtaaactctaattcactcaagtaatata |
28820787 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 35037568 - 35037624
Alignment:
| Q |
44 |
cgtagtactatataaatgacttgtaacagtgtaaaccctaattcactcaactaatat |
100 |
Q |
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|||| |||| |||| ||| ||||||||| ||||||||||||| ||||||| |||||| |
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| T |
35037568 |
cgtaatactgtatatatggcttgtaacattgtaaaccctaatacactcaagtaatat |
35037624 |
T |
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