View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6965_low_3 (Length: 587)
Name: NF6965_low_3
Description: NF6965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6965_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 531; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 7 - 569
Target Start/End: Original strand, 35684045 - 35684607
Alignment:
| Q |
7 |
tttggtggtgatgggtaatcgtgaaaatgaaaagcattcgattcttatggtctctgattttttctatcccaacgttggtggtgtcgagaatcacatctac |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35684045 |
tttggtggtgatgggtaatcgtgaaaatgaaaagcattcgattcttatggtctctgattttttctatcccaacgttggtggtgtcgagaatcacatctac |
35684144 |
T |
|
| Q |
107 |
tgcctctctcaatgcttgctcaacttaggccataaggtatcacattatcatttttcaccattctagttctactgcttaattcgattcacttatttcacct |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35684145 |
tgcctctctcaatgcttgctcaacttaggccataaggtatcacattatcatttttcaccattctagttctactgcttaattcgattcacttatttcacct |
35684244 |
T |
|
| Q |
207 |
tatatactgctttaaccacttttatcataaatgtttatgctatagacacttaattaagctgattatccaaacagagccttaggggagaaaatgagagctc |
306 |
Q |
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||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||| ||| |
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| T |
35684245 |
tatatactgctttaaccacttatatcataaatttttatgctatatacacttaattaagctgattatccaaacatatccttaggggagaaaatgagatctc |
35684344 |
T |
|
| Q |
307 |
tttctctttcattccatttatcataagaattatatctcttgaaaaggattgttttcatctaaagaattaatcattttacactttttcattcacgtagtaa |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
35684345 |
tttctctttcattccatttatcataagaattatatctcttgaaaaggatcgttttcatctaaagaattaatcattttacactttttccttcacgtagtaa |
35684444 |
T |
|
| Q |
407 |
cataatatgattacacacacttcaaatcaggactgatatatttataacttattgtgctgtctgaggtaatttgggaagtttttgaattgaattaaaatgt |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35684445 |
cataatatgattacacacacttcaaatcaggactgatatatttataacttattgtgctgtctgaggtaatttgggaagtttttgaattgaattaaaatgt |
35684544 |
T |
|
| Q |
507 |
aactaccaatgatcaggtggtggttgtaactcatgcttatggaaaacgctctggggttagata |
569 |
Q |
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| T |
35684545 |
aactaccaatgatcaggtggtggttgtaactcatgcttatggaaaacgctctggggttagata |
35684607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 233 - 285
Target Start/End: Original strand, 18512562 - 18512614
Alignment:
| Q |
233 |
ataaatgtttatgctatagacacttaattaagctgattatccaaacagagcct |
285 |
Q |
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|||||||||||||||||| |||||||||||| || |||||||| || ||||| |
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| T |
18512562 |
ataaatgtttatgctataagcacttaattaagttgcttatccaagcaaagcct |
18512614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 240 - 276
Target Start/End: Complemental strand, 52734750 - 52734714
Alignment:
| Q |
240 |
tttatgctatagacacttaattaagctgattatccaa |
276 |
Q |
| |
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||||||||||| |||||||||||||||| |||||||| |
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| T |
52734750 |
tttatgctataaacacttaattaagctgtttatccaa |
52734714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 128; Significance: 7e-66; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 347 - 567
Target Start/End: Original strand, 20685213 - 20685439
Alignment:
| Q |
347 |
gaaaaggattgttttcatctaaagaattaatcattttacactttttcattcacgtagtaacataatatgattacacacacttcaaatcaggactgatata |
446 |
Q |
| |
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||||| || |||||| ||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||| |
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| T |
20685213 |
gaaaatgactgtttttatctaaagagttaatcatcttgcactttttcattcacgtagtaacataatatgattacacgc--ttcaaatcaggactggtata |
20685310 |
T |
|
| Q |
447 |
ttt-------ataacttattgtgctgtctgaggtaatttgggaagtttttgaattgaa-ttaaaatgtaactaccaatgatcaggtggtggttgtaactc |
538 |
Q |
| |
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||| |||||||||| ||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
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| T |
20685311 |
tttctaaattataacttattatgctgtctgaggtaatttgcaatgtttttgaattgaaattaaaatgtaactaccaatgatcaggtggtggttgtaaccc |
20685410 |
T |
|
| Q |
539 |
atgcttatggaaaacgctctggggttaga |
567 |
Q |
| |
|
|||||||||||||| |||||||||||||| |
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|
| T |
20685411 |
atgcttatggaaaatgctctggggttaga |
20685439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 53 - 144
Target Start/End: Complemental strand, 40673391 - 40673300
Alignment:
| Q |
53 |
atggtctctgattttttctatcccaacgttggtggtgtcgagaatcacatctactgcctctctcaatgcttgctcaacttaggccataaggt |
144 |
Q |
| |
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|||||||| |||||||||||||| ||| ||||||||||||| |||||||| || | ||||||||||| ||| ||||||||||||| ||||| |
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| T |
40673391 |
atggtctcagattttttctatcctaactttggtggtgtcgaaaatcacatttattatctctctcaatgtttgatcaacttaggccacaaggt |
40673300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 519 - 570
Target Start/End: Complemental strand, 40672585 - 40672534
Alignment:
| Q |
519 |
tcaggtggtggttgtaactcatgcttatggaaaacgctctggggttagatat |
570 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| || |||||||| |||||| |
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| T |
40672585 |
tcaggtggtggttgcaactcatgcttatggaaatcgatctggggtcagatat |
40672534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 281
Target Start/End: Original strand, 753347 - 753395
Alignment:
| Q |
233 |
ataaatgtttatgctatagacacttaattaagctgattatccaaacaga |
281 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| || ||||||||||||| |
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| T |
753347 |
ataaatgtttatgctataaacacttaattaagttgtttatccaaacaga |
753395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 279
Target Start/End: Original strand, 30237879 - 30237935
Alignment:
| Q |
223 |
cacttttatcataaatgtttatgctatagacacttaattaagctgattatccaaaca |
279 |
Q |
| |
|
||||| ||| |||| || |||||||||||||||||||||||| || ||||||||||| |
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|
| T |
30237879 |
cacttatataataagtgcttatgctatagacacttaattaagttgtttatccaaaca |
30237935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 223 - 267
Target Start/End: Complemental strand, 31420895 - 31420851
Alignment:
| Q |
223 |
cacttttatcataaatgtttatgctatagacacttaattaagctg |
267 |
Q |
| |
|
||||| ||| ||||||| |||||||||| |||||||||||||||| |
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|
| T |
31420895 |
cacttatataataaatgattatgctataaacacttaattaagctg |
31420851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 16945133 - 16945173
Alignment:
| Q |
240 |
tttatgctatagacacttaattaagctgattatccaaacag |
280 |
Q |
| |
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||||||||||| ||||||||||| |||| |||||||||||| |
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| T |
16945133 |
tttatgctataaacacttaattaggctgtttatccaaacag |
16945173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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