View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6965_low_31 (Length: 227)
Name: NF6965_low_31
Description: NF6965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6965_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 6 - 215
Target Start/End: Original strand, 31666986 - 31667195
Alignment:
| Q |
6 |
gagcagaacctgtgtactacaaacacaggccatctgtcctcttttatcagcagctggtgtagaagattctgttcatcattttcatccacgcagacacgct |
105 |
Q |
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| T |
31666986 |
gagctgaacttgtgtactacaaacacaggccatctgtcctcttttatcagcagctggtgtagaagattctgttcatcattttcatccacgcagacacgct |
31667085 |
T |
|
| Q |
106 |
caagaatttcaagtacccatgtacagcataatgatgtgatcccgttactaacacgactatcttcaacaaatattgcagactttactgattcaattaagac |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31667086 |
caagaatttcaagtacccatgtacagcataatgatgtgatcccgttattaacacgactatcttcaacaaatattgcagactttactgattcaattaagac |
31667185 |
T |
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| Q |
206 |
tttccacagg |
215 |
Q |
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|||||||||| |
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| T |
31667186 |
tttccacagg |
31667195 |
T |
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