View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6965_low_35 (Length: 202)
Name: NF6965_low_35
Description: NF6965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6965_low_35 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 35877404 - 35877236
Alignment:
| Q |
18 |
aatatcagcatcccaaacagcttcttgcaaattagtaacaactttcaaaggacaaacaggagtatcaatcatattcaaacaaaaaccatctttaagaatc |
117 |
Q |
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| T |
35877404 |
aatatcagcatcccaaacagcttcttgcaaattagtaacaactttcaaaggacaaacaggagtatcaatcatattcaaacaaaaaccatctttaagaatc |
35877305 |
T |
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| Q |
118 |
tcatcagcataaagtgtcctatcaccaagtcttgcttcaacatattttagataagcacaacgtcttatc |
186 |
Q |
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| T |
35877304 |
tcatcagcataaagtgtcctatcaccaagtcttgcttcaacatattttagataagcacaacgtcttatc |
35877236 |
T |
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Target: scaffold0005 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 164
Target Start/End: Complemental strand, 192731 - 192589
Alignment:
| Q |
22 |
tcagcatcccaaacagcttcttgcaaattagtaacaactttcaaaggacaaacaggagtatcaatcatattcaaacaaaaaccatctttaagaatctcat |
121 |
Q |
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| T |
192731 |
tcagcatcccatacagcttcctgtaagttcgtcacaaccttcaaagggcaaacaggtgtatcaaccatattcaaacaaaacccatctttcaaaatctcat |
192632 |
T |
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| Q |
122 |
cagcataaagtgtcctatcaccaagtcttgcttcaacatattt |
164 |
Q |
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| T |
192631 |
ctgcatgaagaaccctatcacctaatcttccctcgacatattt |
192589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 164
Target Start/End: Original strand, 14624652 - 14624794
Alignment:
| Q |
22 |
tcagcatcccaaacagcttcttgcaaattagtaacaactttcaaaggacaaacaggagtatcaatcatattcaaacaaaaaccatctttaagaatctcat |
121 |
Q |
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| T |
14624652 |
tcagcatcccatacagcttcctgtaagttcgtcacaaccttcaaagggcaaacaggtgtatcaaccatattcaaacaaaacccatctttcaaaatctcat |
14624751 |
T |
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| Q |
122 |
cagcataaagtgtcctatcaccaagtcttgcttcaacatattt |
164 |
Q |
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| T |
14624752 |
ctgcatgaagaaccctatcacctaatcttccctcgacatattt |
14624794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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