View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6965_low_5 (Length: 515)
Name: NF6965_low_5
Description: NF6965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6965_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 480; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 16 - 499
Target Start/End: Original strand, 2756144 - 2756627
Alignment:
| Q |
16 |
atgaacaacagctagaacaaaaataaagatatgcagtttatgcaatgcttccacagataatagaggcacctttccctgaaaataacatcataataataca |
115 |
Q |
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| T |
2756144 |
atgaacaacagctagaacaaaaataaagatatgcagtttatgcaatgcttccacagataatagaggcacctttccctgaaaataacatcataataataca |
2756243 |
T |
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| Q |
116 |
aaatatgattaaagtggaaaagatgattaattcaccaaatcaaaattctctaaataacatcaagagaataaacatgataagactgcaatcgtaatttaaa |
215 |
Q |
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| T |
2756244 |
aaatatgattaaagtggaaaagatgattaattcaccaaatcaaaattctctaaataacatcaagagaataaacatgataagactgcaatcgtaatttaaa |
2756343 |
T |
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| Q |
216 |
accttgaacaaaatgtaaaggaccataacatgtaatttcaataccttggcagtacagtatccaatttcttcatctttggacgaatgatcgtgatcgtcac |
315 |
Q |
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| T |
2756344 |
accttgaacaaaatgtaaaggaccataacatgtaatttcaataccttggcagtacagtatccaatttcttcatctttggacgaatgatcgtgatcgtcac |
2756443 |
T |
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| Q |
316 |
ctagaaggcgcctagcagtgccaaaaacatccttggaagagaaaaaagtctgaaaatgtgacttggatggtaattttgtttctttgacttcatcgtcccc |
415 |
Q |
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| T |
2756444 |
ctagaaggcgcttagcagtgccaaaaacatccttggaagagaaaaaagtctgaaaatgtgacttggatggtaattttgtttctttgacttcatcgtcccc |
2756543 |
T |
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| Q |
416 |
attaatactacaaggaagcatatgaatagtccattctaccggaacacaaatttttatcatcccattttgtgttaccgttagaaa |
499 |
Q |
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| T |
2756544 |
attaatactacaaggaagcatatgaatagtccattctaccggaacacaaatttttatcatcccattttgtgttaccgttagaaa |
2756627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 16 - 169
Target Start/End: Original strand, 2748105 - 2748255
Alignment:
| Q |
16 |
atgaacaacagctagaacaaaaataaagatatgcagtttatgcaatgcttccacagataatagaggcacctttccctgaaaataacatcataataataca |
115 |
Q |
| |
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|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||| ||||| |
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| T |
2748105 |
atgaacaatagctaggacaaaaataaagatatgcagtttatgcaatgcttccacagataatagaggtacttttccctgaaaataa---cataatcataca |
2748201 |
T |
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| Q |
116 |
aaatatgattaaagtggaaaagatgattaattcaccaaatcaaaattctctaaa |
169 |
Q |
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| T |
2748202 |
aaatatgattaaagtgaataaaatgattaaatcatcaaatcaaaattgtctaaa |
2748255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 422 - 489
Target Start/End: Original strand, 2748493 - 2748560
Alignment:
| Q |
422 |
actacaaggaagcatatgaatagtccattctaccggaacacaaatttttatcatcccattttgtgtta |
489 |
Q |
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| T |
2748493 |
actacaaggaagcatatgataagtccactcatcaggaacacaaatttttgttatcccattttgtgtta |
2748560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 376
Target Start/End: Original strand, 2748393 - 2748456
Alignment:
| Q |
313 |
cacctagaaggcgcctagcagtgccaaaaacatccttggaagagaaaaaagtctgaaaatgtga |
376 |
Q |
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| T |
2748393 |
caccaagaaggcgccgagcagtgccagaaacaagatccgaagagaaaaaagtctgaaaatgtga |
2748456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 289
Target Start/End: Original strand, 2748316 - 2748357
Alignment:
| Q |
248 |
taatttcaataccttggcagtacagtatccaatttcttcatc |
289 |
Q |
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| T |
2748316 |
taatttcaataccttggcagtgcagtatccaactttttcatc |
2748357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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