View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6966_high_9 (Length: 318)
Name: NF6966_high_9
Description: NF6966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6966_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 10 - 300
Target Start/End: Complemental strand, 16686887 - 16686597
Alignment:
| Q |
10 |
attatactgattatcatggttaaatttacaattgttacaccgggtgtgaaaaattcaaccttatctaggtcaactggatagagatgtacaactgggttct |
109 |
Q |
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| T |
16686887 |
attacactgattatcatggttaaatttacaattgttacaccgggtgtgaaaaattcaaccttatctaggtcaactggatagagatgtacaactgggttct |
16686788 |
T |
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| Q |
110 |
tggcttcaaaggttgtgaaaactaatataatgacaatggaaacaatgatcaacgaaattattgaaaccaacaaaaagactttgaaacatttactaatcat |
209 |
Q |
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| T |
16686787 |
tggcttcaaaggttgtgaaaactaatataatgacaatggaaacaatgatcaacgaaattattgaaaccaacaaaaagattttgaaacatttactaatcat |
16686688 |
T |
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| Q |
210 |
gatttttggttctgtgggatatttggtgtaacttaattatgcaatgccaaaggttggtttatgggaaaggtcaagatcaataaagcatggc |
300 |
Q |
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| T |
16686687 |
gatttttggttctgtgggatatttggtataacttaattatgcaatgccaaaggttggtttatgggaaaggtcaagatcaataaagcatggc |
16686597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 183
Target Start/End: Complemental strand, 16619641 - 16619543
Alignment:
| Q |
88 |
tagagatgtacaactgggttcttggcttcaaaggttgtgaaaactaa---tataatgacaatggaaacaatgatcaacgaaattattgaaaccaacaaa |
183 |
Q |
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| T |
16619641 |
tagacatgtacatctgggttcttgggtttaaagattgtgaaaactaaggataaaatcacggtggcaacaatgatcaagaaaattattgacactaacaaa |
16619543 |
T |
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