View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6966_low_1 (Length: 886)
Name: NF6966_low_1
Description: NF6966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6966_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 689; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 689; E-Value: 0
Query Start/End: Original strand, 29 - 874
Target Start/End: Original strand, 28129733 - 28130596
Alignment:
| Q |
29 |
aatgtatacgatgtcacgaattctactgatcccctaatcatgtatggcaaccaatacgaagaaggtgatgtttctcttgtccatgaaagtaagcttgaat |
128 |
Q |
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| T |
28129733 |
aatgtatatgatgtcacgaactctactgatcccctaatcatgtatggcaaccaatacgaagaaggtgatgtttctcttgtccatgaaagtaagcttgatt |
28129832 |
T |
|
| Q |
129 |
ttggagatccatacaggaaacatcaaatgatatgtaggtaggttcttctggctactgtacattacattttctggaactga-tttcggcattttgtcagca |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
28129833 |
ttggagatccatacaggaaacatcaaatgatatgtaggtaggttcttctggctactgtacattacattttctggaactgactttcggcattttgtcagca |
28129932 |
T |
|
| Q |
228 |
gaaagatgcttatgatcaaacttttgtacaggtatcaccagaaggcaccgccaaattggacagcactttctattgcaatcctattctttgtgatttttct |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
28129933 |
gaaagatgcttatgatcaaacttttgtacaggtatcaccagaaggcaccgccaaattggacagcactttctactgcaatcctattctttgtgattcttct |
28130032 |
T |
|
| Q |
328 |
attaatcggttacattttatatggtgctgggaattatattgtcaaagtagaggatgatttccacgaaatgcaggagctaaaagttcgagcagaggcagac |
427 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
28130033 |
attaatcggttacattttatatggtgctgggaattatattgtcaaagtagaggatgatttccacgaaatgcaggagctaaaagttcgagcagaggcagcc |
28130132 |
T |
|
| Q |
428 |
gatgttgctaagtcacaggtacttttccttgacatgtcgttggcacttggcatatttcgatatttcctttgattacgcaacaataactaatactgaaatt |
527 |
Q |
| |
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| T |
28130133 |
gatgttgctaagtcacaggtacttttccttgacatgtcgttggcacttggcatatttcgatattttctttgattacgcaacaataactaatactgaaatt |
28130232 |
T |
|
| Q |
528 |
ttgttttttatgtcagtttctagctactgtctctcatgaaattagaatacctatgaatggcattttaggtaactccaagatnnnnnnnnnnnnnnnnnnn |
627 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
28130233 |
ttgttttttatgtcagtttctagctactgtctctcatgaaattagaacacctatgaatggcattttaggtaactccaagattctctctctctctctctct |
28130332 |
T |
|
| Q |
628 |
nngcctaaaatgtaacatatgctttcatacctttcactttctcattaataatgttatcacaaaacaaaactctgtatgattgtaggaatgcttggtctgc |
727 |
Q |
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| T |
28130333 |
ctgcctaaaatgtaacatatgctttcatacctttcactttctcattaataatgttatcacaaaacaaaactctgtatgattgtaggaatgcttggtctgc |
28130432 |
T |
|
| Q |
728 |
ttctacacggaattgaactcaacccaacgtgactatgctcagaccgctcaagcatgtgggaaag-----------------gtatggccgagcaaaaatt |
810 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || ||||||||||||| |
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| T |
28130433 |
ttctacacggaattgaactcaacccaacgtgactatgctcagaccgctcaagcatgtgggaaggctctgattaaacgaagtgcttgaccgagcaaaaatt |
28130532 |
T |
|
| Q |
811 |
gaagctggcaaattagagctggaagcggttccatttgaccttcgttccatactcgatgatgtcc |
874 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28130533 |
gaagctggcaaattagagctggaagcggttccatttgaccttcgttccatactcgatgatgtcc |
28130596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 600; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 11 - 789
Target Start/End: Complemental strand, 44821890 - 44821119
Alignment:
| Q |
11 |
catcaagcaattttggtcaatgtatacgatgtcacgaattctactgatcccctaatcatgtatggcaaccaatacgaagaaggtgatgtttctcttgtcc |
110 |
Q |
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|||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44821890 |
catcaagcaattttggtcaatgtatatgatgtcacgaactcttctgatcccctaatcatgtatggcaaccaatacgaagaaggtgatgtttctcttgtcc |
44821791 |
T |
|
| Q |
111 |
atgaaagtaagcttgaatttggagatccatacaggaaacatcaaatgatatgtaggtaggttcttctggctactgtacattacattttctggaactga-t |
209 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
44821790 |
atgaaagtaagcttgattttggagatccatacaggaaacatcaaatgatatgtaggtaggttcttctggctactgtacattacattttctggaactgact |
44821691 |
T |
|
| Q |
210 |
ttcggcattttgtcagcagaaagatgcttatgatcaaacttttgtacaggtatcaccagaaggcaccgccaaattggacagcactttctattgcaatcct |
309 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
44821690 |
ttcggcattttgtcagcagaaagatgcttatgatcaaacttttgtacaggtatcaccagaaggcaccgccaaattggacagcactttctactgcaatcct |
44821591 |
T |
|
| Q |
310 |
attctttgtgatttttctattaatcggttacattttatatggtgctgggaattatattgtcaaagtagaggatgatttccacgaaatgcaggagctaaaa |
409 |
Q |
| |
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||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44821590 |
attctttgtgattcttcttttaatcggttacattttatatggtgctgggaatcatattgtcaaagtagaggatgatttccacgaaatgcaggagctaaaa |
44821491 |
T |
|
| Q |
410 |
gttcgagcagaggcagacgatgttgctaagtcacaggtacttttccttgacatgtcgttggcacttggcatatttcgatatttcctttgattacgcaaca |
509 |
Q |
| |
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|||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44821490 |
gttcgagcagaggcagccgatgttgccaagtcacaggtacttttccttgacatgtcgttggcacttggcatatttcgatatttcctttgattacgcaaca |
44821391 |
T |
|
| Q |
510 |
ataactaatactgaaattttgttttttatgtcagtttctagctactgtctctcatgaaattagaatacctatgaatggcattttaggtaactccaagatn |
609 |
Q |
| |
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||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| || |
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| T |
44821390 |
ataactaatactgaaattt--ttgtttttgtcagtttctagctactgtctctcatgaaattagaacacctatgaatggcattttaggtaactgcaaaat- |
44821294 |
T |
|
| Q |
610 |
nnnnnnnnnnnnnnnnnnnngcctaaaatgtaacatatgctttcatacctttcactttctcattaataatgttatcacaaaacaaaactctgtatgattg |
709 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
44821293 |
-------tctctctctctttgcctaacatgtaacatatgctttcatagctttcacttgctcattaataatgttatcacaaaacaaaactctgtatgattg |
44821201 |
T |
|
| Q |
710 |
taggaatgcttggtctgcttcta--cacggaattgaactcaacccaacgtgactatgctcagaccgctcaagcatgtgggaa |
789 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| |
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| T |
44821200 |
taggaatgcttggtctgcttctacgcacggaattgaactcaactcaacgggactatgctcagactgctcaagcatgtgggaa |
44821119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 798 - 874
Target Start/End: Complemental strand, 44821085 - 44821009
Alignment:
| Q |
798 |
ccgagcaaaaattgaagctggcaaattagagctggaagcggttccatttgaccttcgttccatactcgatgatgtcc |
874 |
Q |
| |
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| T |
44821085 |
ccgagcaaaaattgaagctggcaaattagagctggaagcggttccatttgaccttcgttccatactcgatgatgtcc |
44821009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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