View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6966_low_12 (Length: 361)
Name: NF6966_low_12
Description: NF6966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6966_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 40843797 - 40844141
Alignment:
| Q |
1 |
cacctcgaattccctaacaaatgagaagcacatttagagttctataactaactaatttgtatcttgtttaagattggaaaaattaattgagcttaccaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40843797 |
cacctcgaattccctaacaaatgagaagcacatttagagttctataactaactaatttgtatcttgtttaagattggaaaaattaattgagcttaccaag |
40843896 |
T |
|
| Q |
101 |
ccaattgcatattagatctttttctccggcgtacacaagtaacttgattccatcctcaagaagagtaggaatacccacttcaagatttttcatccaatcc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
40843897 |
ccaattgcatattagatctttttctccggcgtacacaagtaacttgattccatcctcaagaagagcaggaatacccacttcaagatttttcatccaatcc |
40843996 |
T |
|
| Q |
201 |
tccgtcaaggcagcgtgtactaagaaactgcaatattcaaatttcaagtccccaacacctaaagcttcctttactgtcttcatgttcaacaatgtctcta |
300 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40843997 |
tccgtcaaggcagcatgtactaagaaactgcaatattcaaatttcaagtccccaacacctaaagcttcctttactgtcttcatgttcaacaatgtctcta |
40844096 |
T |
|
| Q |
301 |
tgtcagagaagtcctgacaatgaccgaaacctccctcacatttct |
345 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40844097 |
tgtcagagaagtcctgacaatgaccgaaagctccctcacatttct |
40844141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 90 - 312
Target Start/End: Original strand, 40839448 - 40839670
Alignment:
| Q |
90 |
agcttaccaagccaattgcatattagatctttttctccggcgtacacaagtaacttgattccatcctcaagaagagtaggaatacccacttcaagatttt |
189 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
40839448 |
agcttaccaagccaattgcatattagatctttttctccggcatacacaagtaacttgattccatcctcaagaagagcaggaatacccacttcaagatttt |
40839547 |
T |
|
| Q |
190 |
tcatccaatcctccgtcaaggcagcgtgtactaagaaactgcaatattcaaatttcaagtccccaacacctaaagcttcctttactgtcttcatgttcaa |
289 |
Q |
| |
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|||||||||||| | || || | || |||| | ||||||| | |||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
40839548 |
tcatccaatcctgcaacatggtattgtatactgtgctactgcaagaaacaaattccaagtccccaacacctaaagcttcctttactatcttcatgttcaa |
40839647 |
T |
|
| Q |
290 |
caatgtctctatgtcagagaagt |
312 |
Q |
| |
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|| ||||||||| | ||||||| |
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| T |
40839648 |
gaacgtctctatgccggagaagt |
40839670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 78 - 295
Target Start/End: Original strand, 40849988 - 40850205
Alignment:
| Q |
78 |
aaaaattaattgagcttaccaagccaattgcatattagatctttttctccggcgtacacaagtaacttgattccatcctcaagaagagtaggaataccca |
177 |
Q |
| |
|
||||| |||| || ||||||||||||||||||||| ||||||| |||||| || |||||||| | ||||||||||||||| ||||||| ||||||||| | |
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| T |
40849988 |
aaaaagtaatcgaacttaccaagccaattgcatatgagatcttcttctccagcatacacaagcaccttgattccatcctccagaagagcaggaataccaa |
40850087 |
T |
|
| Q |
178 |
cttcaagatttttcatccaatcctccgtcaaggcagcgtgtactaagaaactgcaatattcaaatttcaagtccccaacacctaaagcttcctttactgt |
277 |
Q |
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|||||||||||||||||||||||| | || |||| || |||| | ||||||| | |||||| ||||||||||||||||||||||||| |||||| |
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| T |
40850088 |
cttcaagatttttcatccaatcctgcaacatggcactgtatactgtgctactgcaagaaacaaattccaagtccccaacacctaaagcttcccttactga |
40850187 |
T |
|
| Q |
278 |
cttcatgttcaacaatgt |
295 |
Q |
| |
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|||||||||||| ||||| |
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| T |
40850188 |
cttcatgttcaagaatgt |
40850205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 40839179 - 40839222
Alignment:
| Q |
1 |
cacctcgaattccctaacaaatgagaagcacatttagagttcta |
44 |
Q |
| |
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||||| |||||||||| ||||||||||||||||||||| ||||| |
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|
| T |
40839179 |
caccttgaattccctaccaaatgagaagcacatttagaattcta |
40839222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 92 - 196
Target Start/End: Original strand, 19574291 - 19574395
Alignment:
| Q |
92 |
cttaccaagccaattgcatattagatctttttctccggcgtacacaagtaacttgattccatcctcaagaagagtaggaatacccacttcaagatttttc |
191 |
Q |
| |
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|||||||||||| |||||||| ||||| | ||| || || || ||||| || | |||||||||||||||||| |||||||||| ||||||||||| || |
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| T |
19574291 |
cttaccaagccagttgcatatgagatcatattccccagcataaacaagcaaatcgattccatcctcaagaaggataggaataccaacttcaagattcctc |
19574390 |
T |
|
| Q |
192 |
atcca |
196 |
Q |
| |
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||||| |
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|
| T |
19574391 |
atcca |
19574395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 94 - 200
Target Start/End: Complemental strand, 42339020 - 42338914
Alignment:
| Q |
94 |
taccaagccaattgcatattagatctttttctccggcgtacacaagtaacttgattccatcctcaagaagagtaggaatacccacttcaagatttttcat |
193 |
Q |
| |
|
|||||||||| ||||| || ||||| | ||| || || || ||||| || ||||||||||||||||| || | ||||||||| ||||||||||| |||| |
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| T |
42339020 |
taccaagccagttgcagatgagatcatattccccagcataaacaagcaaattgattccatcctcaagcagggcaggaataccgacttcaagattcctcat |
42338921 |
T |
|
| Q |
194 |
ccaatcc |
200 |
Q |
| |
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||||||| |
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| T |
42338920 |
ccaatcc |
42338914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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