View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6966_low_17 (Length: 249)

Name: NF6966_low_17
Description: NF6966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6966_low_17
NF6966_low_17
[»] chr3 (14 HSPs)
chr3 (36-249)||(44791575-44791789)
chr3 (180-249)||(4976755-4976825)
chr3 (192-249)||(16687596-16687653)
chr3 (180-249)||(3917777-3917847)
chr3 (180-249)||(4232224-4232294)
chr3 (180-249)||(8381090-8381160)
chr3 (180-249)||(11312601-11312671)
chr3 (180-249)||(13525180-13525250)
chr3 (180-241)||(24250736-24250798)
chr3 (180-249)||(29212112-29212182)
chr3 (180-249)||(30553015-30553085)
chr3 (192-249)||(42296734-42296792)
chr3 (180-247)||(4833158-4833226)
chr3 (180-239)||(27396865-27396925)
[»] chr8 (18 HSPs)
chr8 (179-249)||(36372070-36372141)
chr8 (180-247)||(24654985-24655053)
chr8 (180-249)||(4977081-4977151)
chr8 (180-249)||(25250796-25250866)
chr8 (180-249)||(27928169-27928239)
chr8 (177-249)||(19649545-19649618)
chr8 (182-241)||(8525256-8525316)
chr8 (193-249)||(27849790-27849846)
chr8 (180-249)||(4430782-4430852)
chr8 (180-249)||(6317311-6317381)
chr8 (180-249)||(6845030-6845100)
chr8 (180-249)||(9569735-9569805)
chr8 (192-249)||(9998690-9998748)
chr8 (180-241)||(10617796-10617858)
chr8 (192-249)||(27817496-27817554)
chr8 (180-249)||(37295137-37295207)
chr8 (180-249)||(38953527-38953597)
chr8 (180-249)||(44814874-44814944)
[»] chr2 (13 HSPs)
chr2 (180-249)||(4014860-4014930)
chr2 (180-249)||(2287356-2287426)
chr2 (180-249)||(38490447-38490517)
chr2 (180-249)||(37103332-37103403)
chr2 (180-249)||(7315808-7315878)
chr2 (180-249)||(7975061-7975131)
chr2 (180-249)||(15897225-15897295)
chr2 (180-249)||(23080145-23080215)
chr2 (180-249)||(31524999-31525069)
chr2 (180-249)||(33607054-33607124)
chr2 (180-249)||(34242498-34242568)
chr2 (180-249)||(36754788-36754858)
chr2 (193-241)||(22999099-22999148)
[»] chr4 (14 HSPs)
chr4 (171-249)||(51281468-51281547)
chr4 (180-249)||(7512778-7512848)
chr4 (180-249)||(14285106-14285176)
chr4 (180-249)||(5396987-5397057)
chr4 (180-249)||(12821176-12821246)
chr4 (180-249)||(18371357-18371427)
chr4 (180-241)||(28010106-28010168)
chr4 (180-249)||(34684213-34684283)
chr4 (180-249)||(35828285-35828355)
chr4 (180-249)||(42154185-42154255)
chr4 (180-249)||(47462083-47462153)
chr4 (177-249)||(42412035-42412108)
chr4 (193-249)||(46552949-46553006)
chr4 (174-241)||(52556438-52556506)
[»] scaffold0244 (1 HSPs)
scaffold0244 (180-249)||(7804-7874)
[»] chr7 (11 HSPs)
chr7 (180-249)||(7312500-7312570)
chr7 (180-249)||(2286140-2286210)
chr7 (180-249)||(5508696-5508766)
chr7 (180-249)||(13769670-13769740)
chr7 (180-249)||(27396361-27396431)
chr7 (180-249)||(35157131-35157201)
chr7 (180-249)||(37410749-37410819)
chr7 (180-249)||(45236941-45237011)
chr7 (193-249)||(33906305-33906362)
chr7 (180-217)||(47182814-47182851)
chr7 (180-247)||(48612528-48612596)
[»] chr5 (19 HSPs)
chr5 (180-249)||(28143279-28143349)
chr5 (174-247)||(29806572-29806646)
chr5 (180-249)||(40595968-40596037)
chr5 (183-249)||(10165546-10165613)
chr5 (180-249)||(1269566-1269636)
chr5 (177-249)||(1833366-1833440)
chr5 (180-249)||(4164970-4165040)
chr5 (180-249)||(6029623-6029693)
chr5 (180-249)||(6053098-6053168)
chr5 (180-249)||(6672252-6672322)
chr5 (180-249)||(17869171-17869241)
chr5 (180-249)||(18473925-18473995)
chr5 (180-249)||(23311220-23311290)
chr5 (184-241)||(33028245-33028303)
chr5 (180-249)||(34930236-34930306)
chr5 (180-249)||(36569290-36569360)
chr5 (177-249)||(40318832-40318906)
chr5 (174-242)||(13549205-13549274)
chr5 (174-218)||(32270860-32270904)
[»] chr1 (16 HSPs)
chr1 (180-248)||(15104055-15104124)
chr1 (177-249)||(15324501-15324573)
chr1 (183-249)||(32880626-32880693)
chr1 (192-241)||(9705550-9705600)
chr1 (180-249)||(10635500-10635570)
chr1 (180-249)||(13018084-13018154)
chr1 (184-249)||(18089815-18089881)
chr1 (180-249)||(19338225-19338295)
chr1 (180-249)||(20164120-20164190)
chr1 (180-249)||(29005101-29005171)
chr1 (180-249)||(33845651-33845721)
chr1 (180-249)||(33948257-33948327)
chr1 (180-249)||(48314178-48314248)
chr1 (193-249)||(7204555-7204612)
chr1 (180-248)||(48731804-48731873)
chr1 (180-247)||(43676073-43676141)
[»] chr6 (6 HSPs)
chr6 (183-249)||(4480488-4480555)
chr6 (180-249)||(1241606-1241676)
chr6 (180-249)||(2314646-2314716)
chr6 (180-249)||(8448189-8448259)
chr6 (180-249)||(8456993-8457063)
chr6 (181-217)||(27866600-27866636)
[»] scaffold0402 (1 HSPs)
scaffold0402 (180-249)||(1288-1358)
[»] scaffold0515 (1 HSPs)
scaffold0515 (177-249)||(2486-2559)
[»] scaffold0306 (1 HSPs)
scaffold0306 (177-249)||(2486-2559)
[»] scaffold0882 (1 HSPs)
scaffold0882 (180-239)||(3754-3814)


Alignment Details
Target: chr3 (Bit Score: 163; Significance: 4e-87; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 36 - 249
Target Start/End: Original strand, 44791575 - 44791789
Alignment:
Q  36 acggatacctatgggcatgggtatttttagcacccctgtttagatgtctagacaatagcccaatgaaaacatctgttagcactttccaataagaaaata- 134  Q
    ||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  44791575 acggatacccatgggcatgggtatttttggcacccctatttagatgtctagacaatagcccaatgaaaacatctgttagcactttccaataagaaaatac 44791674  T
Q  135 caagattgatatatatgaaacacaaacaaaacatgataaaaatcatagctcaattgacaaaatgccaaaattgttagaccggacacatgactggggttcg 234  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||||| || |||||||| |||||||||||||||||| |||||  ||||||||    
T  44791675 caagattgatatatatgaaacataaacaaaacatgataaaaatcctagctcaactggcaaaatgctaaaattgttagaccggacgcatgatcggggttcg 44791774  T
Q  235 aaccccgttacctcc 249  Q
    |||||||||||||||    
T  44791775 aaccccgttacctcc 44791789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 4976825 - 4976755
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccgga-cacatgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || |||||||||||||||||||| |||||   |||||| ||||||||||||||| |||||||    
T  4976825 tagctcaactggcaaaatgccaaaattgttaggccggatgccatgaccggggttcgaaccccggtacctcc 4976755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 192 - 249
Target Start/End: Complemental strand, 16687653 - 16687596
Alignment:
Q  192 caaaatgccaaaattgttagaccggacacatgactggggttcgaaccccgttacctcc 249  Q
    ||||||||| |||||||||| |||||| |||||| ||||||||||||| | |||||||    
T  16687653 caaaatgccgaaattgttaggccggacccatgaccggggttcgaacccaggtacctcc 16687596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 3917777 - 3917847
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggaca-catgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || ||||||||| |||||||||| |||||   |||||| ||||||||||||||| |||||||    
T  3917777 tagctcaactggcaaaatgccgaaattgttaggccggatgtcatgaccggggttcgaaccccggtacctcc 3917847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 4232294 - 4232224
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggacac-atgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || ||||||||| |||||||||| |||||  | ||||| ||||||||||||||| |||||||    
T  4232294 tagctcaactggcaaaatgccgaaattgttaggccggatgccatgaccggggttcgaaccccggtacctcc 4232224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 8381090 - 8381160
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggacac-atgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || ||||||||| |||||||||| |||||  | ||||| ||||||||||||||| |||||||    
T  8381090 tagctcaactggcaaaatgccgaaattgttaggccggatgccatgaccggggttcgaaccccggtacctcc 8381160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 11312601 - 11312671
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggacac-atgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || ||||||||| |||||||||| |||||  | ||||| ||||||||||||||| |||||||    
T  11312601 tagctcaactggcaaaatgccgaaattgttaggccggatgctatgaccggggttcgaaccccggtacctcc 11312671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 13525180 - 13525250
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggacac-atgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || ||||||||| |||||||||| |||||  | ||||| ||||||||||||||| |||||||    
T  13525180 tagctcaactggcaaaatgccgaaattgttaggccggatgccatgaccggggttcgaaccccggtacctcc 13525250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 24250736 - 24250798
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggacac-atgactggggttcgaaccccg 241  Q
    ||||||||||| ||||||||| |||||||||| |||||  | ||||| |||||||||||||||    
T  24250736 tagctcaattggcaaaatgccgaaattgttaggccggatgctatgaccggggttcgaaccccg 24250798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 29212182 - 29212112
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggacac-atgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || ||||||||| |||||||||| |||||  | ||||| ||||||||||||||| |||||||    
T  29212182 tagctcaactggcaaaatgccgaaattgttaggccggatgccatgaccggggttcgaaccccggtacctcc 29212112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 30553085 - 30553015
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccgga-cacatgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || ||||||||| ||||||||||||||||   |||||| || |||||||||||| |||||||    
T  30553085 tagctcaactggcaaaatgccgaaattgttagaccggatgccatgaccggagttcgaaccccgatacctcc 30553015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 249
Target Start/End: Original strand, 42296734 - 42296792
Alignment:
Q  192 caaaatgccaaaattgttagaccgga-cacatgactggggttcgaaccccgttacctcc 249  Q
    |||||||||||||||||||| |||||   |||||| ||||||||||||||| |||||||    
T  42296734 caaaatgccaaaattgttaggccggatgtcatgaccggggttcgaaccccggtacctcc 42296792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 247
Target Start/End: Complemental strand, 4833226 - 4833158
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggacac-atgactggggttcgaaccccgttacct 247  Q
    |||||||| || ||||||||| |||||||||| |||||  | ||||| ||||||||||||||| |||||    
T  4833226 tagctcaactggcaaaatgccgaaattgttaggccggatgccatgaccggggttcgaaccccggtacct 4833158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 27396865 - 27396925
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccgga-cacatgactggggttcgaaccc 239  Q
    |||||||| |||||||||||| |||||||||| |||||   |||||| |||||||||||||    
T  27396865 tagctcaactgacaaaatgccgaaattgttaggccggatgccatgaccggggttcgaaccc 27396925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 179 - 249
Target Start/End: Complemental strand, 36372141 - 36372070
Alignment:
Q  179 atagctcaattgacaaaatgccaaaattgttagaccggaca-catgactggggttcgaaccccgttacctcc 249  Q
    ||||||||| || ||||||||| |||||||||| ||||| | |||||||||||||||||||||| |||||||    
T  36372141 atagctcaactggcaaaatgccgaaattgttaggccggatatcatgactggggttcgaaccccgatacctcc 36372070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 24654985 - 24655053
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccgga-cacatgactggggttcgaaccccgttacct 247  Q
    |||||||| || |||||||||||||||||||| |||||   |||||||||||||||||||||| |||||    
T  24654985 tagctcaactggcaaaatgccaaaattgttaggccggatgccatgactggggttcgaaccccggtacct 24655053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 4977151 - 4977081
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggacac-atgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || ||||||||| |||||||||| |||||| | ||||| ||||||||||||||| |||||||    
T  4977151 tagctcaactggcaaaatgccgaaattgttaggccggaccccatgaccggggttcgaaccccggtacctcc 4977081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 25250796 - 25250866
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccgga-cacatgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || |||||||||||||||||||| |||||   |||||| ||||||||||||||| |||||||    
T  25250796 tagctcaactggcaaaatgccaaaattgttaggccggatgccatgaccggggttcgaaccccggtacctcc 25250866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 27928169 - 27928239
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccgga-cacatgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || ||||||||| ||||||||||||||||   |||||| ||||||||||||||| |||||||    
T  27928169 tagctcaactggcaaaatgccgaaattgttagaccggatgccatgaccggggttcgaaccccggtacctcc 27928239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 249
Target Start/End: Complemental strand, 19649618 - 19649545
Alignment:
Q  177 tcatagctcaattgacaaaatgccaaaattgttagaccgga-cacatgactggggttcgaaccccgttacctcc 249  Q
    ||||||||||| || ||||||||| |||||||||| |||||   |||||| ||||||||||||||| |||||||    
T  19649618 tcatagctcaactggcaaaatgccgaaattgttaggccggatgccatgaccggggttcgaaccccggtacctcc 19649545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 241
Target Start/End: Complemental strand, 8525316 - 8525256
Alignment:
Q  182 gctcaattgacaaaatgccaaaattgttagaccgga-cacatgactggggttcgaaccccg 241  Q
    |||||| |||||||||||| | ||||||||||||||   ||||||||||||||||||||||    
T  8525316 gctcaactgacaaaatgccgacattgttagaccggatgccatgactggggttcgaaccccg 8525256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 249
Target Start/End: Complemental strand, 27849846 - 27849790
Alignment:
Q  193 aaaatgccaaaattgttagaccggacacatgactggggttcgaaccccgttacctcc 249  Q
    |||||||| |||||||||| |||||  |||||| ||||||||||||||| |||||||    
T  27849846 aaaatgccgaaattgttaggccggatgcatgaccggggttcgaaccccggtacctcc 27849790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 4430852 - 4430782
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggaca-catgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || ||||||||| |||||||||| |||||   |||||| ||||||||||||||| |||||||    
T  4430852 tagctcaactggcaaaatgccgaaattgttaggccggatgtcatgaccggggttcgaaccccggtacctcc 4430782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 6317311 - 6317381
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggaca-catgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || ||||||||| |||||||||| |||||   |||||| ||||||||||||||| |||||||    
T  6317311 tagctcaactggcaaaatgccgaaattgttaggccggatgtcatgaccggggttcgaaccccggtacctcc 6317381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 6845100 - 6845030
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccgga-cacatgactggggttcgaaccccgttacctcc 249  Q
    ||||||||||| ||||||||| |||||||||| |||||   |||||| |||||||||| |||| |||||||    
T  6845100 tagctcaattggcaaaatgccgaaattgttaggccggatgccatgaccggggttcgaatcccggtacctcc 6845030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 9569735 - 9569805
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggacac-atgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || ||||||||| |||||||||| |||||  | ||||| ||||||||||||||| |||||||    
T  9569735 tagctcaactggcaaaatgccgaaattgttaggccggatgccatgaccggggttcgaaccccggtacctcc 9569805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 249
Target Start/End: Complemental strand, 9998748 - 9998690
Alignment:
Q  192 caaaatgccaaaattgttagaccggaca-catgactggggttcgaaccccgttacctcc 249  Q
    ||||||||| |||||||||| ||||| | |||||| ||||||||||||||| |||||||    
T  9998748 caaaatgccgaaattgttaggccggatatcatgaccggggttcgaaccccggtacctcc 9998690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 10617796 - 10617858
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccgga-cacatgactggggttcgaaccccg 241  Q
    |||||||| |||||||||||| | |||||||| |||||   ||||||||||||||||||||||    
T  10617796 tagctcaactgacaaaatgccgacattgttaggccggatgtcatgactggggttcgaaccccg 10617858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 249
Target Start/End: Complemental strand, 27817554 - 27817496
Alignment:
Q  192 caaaatgccaaaattgttagaccggaca-catgactggggttcgaaccccgttacctcc 249  Q
    ||||||||| ||||||||||||||||   |||||| ||||||||||||||| |||||||    
T  27817554 caaaatgccgaaattgttagaccggatgtcatgaccggggttcgaaccccggtacctcc 27817496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 37295137 - 37295207
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggacac-atgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || ||||||||| |||||||||| |||||  | ||||| ||||||||||||||| |||||||    
T  37295137 tagctcaactggcaaaatgccgaaattgttaggccggatgccatgaccggggttcgaaccccggtacctcc 37295207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 38953597 - 38953527
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggaca-catgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || ||||||||| |||||||||| |||||   |||||| ||||||||||||||| |||||||    
T  38953597 tagctcaactggcaaaatgccgaaattgttaggccggatgtcatgaccggggttcgaaccccggtacctcc 38953527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 44814874 - 44814944
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggaca-catgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || ||||||||| |||||||||| |||||   |||||| ||||||||||||||| |||||||    
T  44814874 tagctcaactggcaaaatgccgaaattgttaggccggatgtcatgaccggggttcgaaccccggtacctcc 44814944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 4014930 - 4014860
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccgga-cacatgactggggttcgaaccccgttacctcc 249  Q
    |||||||| |||||||||||| |||||||||| ||||| | |||||| ||||||||||||||| |||||||    
T  4014930 tagctcaactgacaaaatgccgaaattgttaggccggatctcatgaccggggttcgaaccccggtacctcc 4014860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 2287426 - 2287356
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggaca-catgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || ||||||||| |||||||||| ||||| | |||||| ||||||||||||||| |||||||    
T  2287426 tagctcaactggcaaaatgccgaaattgttaggccggatatcatgaccggggttcgaaccccggtacctcc 2287356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 38490517 - 38490447
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggacac-atgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || ||||||||| |||||||||| |||||  | ||||||||||||||||||||| |||||||    
T  38490517 tagctcaactggcaaaatgccgaaattgttaggccggatgccatgactggggttcgaaccccggtacctcc 38490447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 37103332 - 37103403
Alignment:
Q  180 tagctcaattgacaaaa-tgccaaaattgttagaccggaca-catgactggggttcgaaccccgttacctcc 249  Q
    |||||||| |||||||| || | |||||||||||||||||| |||||| |||||| |||||||| |||||||    
T  37103332 tagctcaactgacaaaaatgtcgaaattgttagaccggacatcatgaccggggtttgaaccccgatacctcc 37103403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 7315878 - 7315808
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggaca-catgactggggttcgaaccccgttacctcc 249  Q
    |||||||| | |||||||||  |||||||||||||||| | ||||| |||||||||||| ||| |||||||    
T  7315878 tagctcaactaacaaaatgctgaaattgttagaccggataccatgattggggttcgaactccggtacctcc 7315808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 7975131 - 7975061
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggacac-atgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || ||||||||| |||||||||| |||||  | ||||| ||||||||||||||| |||||||    
T  7975131 tagctcaactggcaaaatgccgaaattgttaggccggatgctatgaccggggttcgaaccccggtacctcc 7975061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 15897225 - 15897295
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggaca-catgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || ||||||||| |||||||||| |||||   |||||| ||||||||||||||| |||||||    
T  15897225 tagctcaactggcaaaatgccgaaattgttaggccggatgtcatgaccggggttcgaaccccggtacctcc 15897295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 23080215 - 23080145
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggaca-catgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || ||||||||| |||||||||| |||||   |||||| ||||||||||||||| |||||||    
T  23080215 tagctcaactggcaaaatgccgaaattgttaggccggatgtcatgaccggggttcgaaccccggtacctcc 23080145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 31525069 - 31524999
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggaca-catgactggggttcgaaccccgttacctcc 249  Q
    |||||||| |||||||||||| |||||||||  ||| | | |||||| || ||||||||||||||||||||    
T  31525069 tagctcaactgacaaaatgccgaaattgttatgccgaaaaccatgaccggagttcgaaccccgttacctcc 31524999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 33607054 - 33607124
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggacac-atgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || ||||||||| |||||||||| || ||  | ||||||||||||||||||||| |||||||    
T  33607054 tagctcaactggcaaaatgccgaaattgttaggccagatgccatgactggggttcgaaccccgatacctcc 33607124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 34242568 - 34242498
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggaca-catgactggggttcgaaccccgttacctcc 249  Q
    |||||||| ||| |||||||| |||||||||| ||||| | |||||  ||||||||||||||| |||||||    
T  34242568 tagctcaactgataaaatgccgaaattgttaggccggatatcatgatcggggttcgaaccccggtacctcc 34242498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 36754858 - 36754788
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggacac-atgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || ||||||||| |||||||||| |||||  | ||||| ||||||||||||||| |||||||    
T  36754858 tagctcaactggcaaaatgccgaaattgttaggccggatgctatgaccggggttcgaaccccggtacctcc 36754788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 22999099 - 22999148
Alignment:
Q  193 aaaatgccaaaattgttagaccggac-acatgactggggttcgaaccccg 241  Q
    ||||||||||||||||||| ||||||  |||||| |||||||||||||||    
T  22999099 aaaatgccaaaattgttagtccggacgtcatgaccggggttcgaaccccg 22999148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 249
Target Start/End: Original strand, 51281468 - 51281547
Alignment:
Q  171 taaaaatcatagctcaattgacaaaatgccaaaattgttagaccgga-cacatgactggggttcgaaccccgttacctcc 249  Q
    ||||||||||||||||| || ||||||||| |||||||||| |||||   |||||| || |||||||||||| |||||||    
T  51281468 taaaaatcatagctcaactggcaaaatgccgaaattgttaggccggatgccatgaccggagttcgaaccccgatacctcc 51281547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 7512778 - 7512848
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccgga-cacatgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || |||||||||||||||||||| |||||   |||||| ||||||||||||||| |||||||    
T  7512778 tagctcaactggcaaaatgccaaaattgttaggccggatgccatgaccggggttcgaaccccggtacctcc 7512848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 14285106 - 14285176
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccgga-cacatgactggggttcgaaccccgttacctcc 249  Q
    |||||||| ||||||||||||||||||||||| |||||   |||||| || |||||||||||| |||||||    
T  14285106 tagctcaactgacaaaatgccaaaattgttaggccggatgccatgaccggcgttcgaaccccggtacctcc 14285176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 5397057 - 5396987
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggaca-catgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || ||||||||| |||||||||| |||||   |||||| ||||||||||||||| |||||||    
T  5397057 tagctcaactggcaaaatgccgaaattgttaggccggatgtcatgaccggggttcgaaccccggtacctcc 5396987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 12821176 - 12821246
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggacac-atgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || ||||||||| |||||||||| |||||  | ||||| ||||||||||||||| |||||||    
T  12821176 tagctcaactggcaaaatgccgaaattgttaggccggatgccatgaccggggttcgaaccccggtacctcc 12821246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 18371357 - 18371427
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggaca-catgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || ||||||||| |||||||||| ||| | | ||||||||||||| |||||||| |||||||    
T  18371357 tagctcaactggcaaaatgccgaaattgttaggccgaatatcatgactggggtttgaaccccggtacctcc 18371427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 28010168 - 28010106
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggaca-catgactggggttcgaaccccg 241  Q
    |||||||| || |||||||||||||||||||| | ||| | |||||| |||||||||||||||    
T  28010168 tagctcaactggcaaaatgccaaaattgttaggcaggatatcatgaccggggttcgaaccccg 28010106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 34684213 - 34684283
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggaca-catgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || ||||||||| |||||||||| |||||   |||||| ||||||||||||||| |||||||    
T  34684213 tagctcaactggcaaaatgccgaaattgttaggccggatgtcatgaccggggttcgaaccccggtacctcc 34684283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 35828285 - 35828355
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggacac-atgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || ||||||||| |||||||||| |||||  | ||||| ||||||||||||||| |||||||    
T  35828285 tagctcaactggcaaaatgccgaaattgttaggccggatgccatgaccggggttcgaaccccggtacctcc 35828355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 42154255 - 42154185
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggaca-catgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || ||||||||| |||||||||| |||||   |||||| ||||||||||||||| |||||||    
T  42154255 tagctcaactggcaaaatgccgaaattgttaggccggatgtcatgaccggggttcgaaccccggtacctcc 42154185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 47462153 - 47462083
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggacac-atgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || ||||||||| |||||||||| |||||  | ||||| ||||||||||||||| |||||||    
T  47462153 tagctcaactggcaaaatgccgaaattgttaggccggatgccatgaccggggttcgaaccccggtacctcc 47462083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 249
Target Start/End: Complemental strand, 42412108 - 42412035
Alignment:
Q  177 tcatagctcaattgacaaaatgccaaaattgttagaccgga-cacatgactggggttcgaaccccgttacctcc 249  Q
    ||||||||||| || ||||||||| |||||||||| || ||   |||||| ||||||||||||||| |||||||    
T  42412108 tcatagctcaactggcaaaatgccgaaattgttaggccagatgccatgaccggggttcgaaccccggtacctcc 42412035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 249
Target Start/End: Original strand, 46552949 - 46553006
Alignment:
Q  193 aaaatgccaaaattgttagaccggaca-catgactggggttcgaaccccgttacctcc 249  Q
    ||||||||||||||||||| |||||   |||||| ||||||||||||||| |||||||    
T  46552949 aaaatgccaaaattgttaggccggatgtcatgaccggggttcgaaccccggtacctcc 46553006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 241
Target Start/End: Complemental strand, 52556506 - 52556438
Alignment:
Q  174 aaatcatagctcaattgacaaaatgccaaaattgttagaccgga-cacatgactggggttcgaaccccg 241  Q
    ||||| |||||||| || |||||||||||||||||||| |||||   |||||  |||||||||||||||    
T  52556506 aaatcctagctcaactggcaaaatgccaaaattgttaggccggatgccatgatcggggttcgaaccccg 52556438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0244 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 7874 - 7804
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccgga-cacatgactggggttcgaaccccgttacctcc 249  Q
    ||||||||||| ||||||||| ||||||||||| ||||   |||||| ||||||||||||||| |||||||    
T  7874 tagctcaattggcaaaatgccgaaattgttagatcggatgtcatgaccggggttcgaaccccgatacctcc 7804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 7312570 - 7312500
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccgga-cacatgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || |||||||||||||||||||| |||||   |||||| ||||||||||||||| |||||||    
T  7312570 tagctcaactggcaaaatgccaaaattgttaggccggatgtcatgaccggggttcgaaccccggtacctcc 7312500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 2286210 - 2286140
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccgga-cacatgactggggttcgaaccccgttacctcc 249  Q
    |||||||| ||||||||||||||||||||||| |||||   ||||||  | |||||||||||| |||||||    
T  2286210 tagctcaactgacaaaatgccaaaattgttaggccggatgccatgaccagagttcgaaccccgctacctcc 2286140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 5508696 - 5508766
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggacac-atgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || ||||||||| |||||||||| |||||  | ||||| ||||||||||||||| |||||||    
T  5508696 tagctcaactggcaaaatgccgaaattgttaggccggatgccatgaccggggttcgaaccccggtacctcc 5508766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 13769740 - 13769670
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggac-acatgactggggttcgaaccccgttacctcc 249  Q
    ||||||||||| ||||||||| |||||||| | ||||||  |||||| ||| ||||||||||| |||||||    
T  13769740 tagctcaattggcaaaatgccgaaattgttgggccggactccatgaccgggattcgaaccccggtacctcc 13769670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 27396431 - 27396361
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggacac-atgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || ||||||||| |||||||||| |||||  | |||| |||||||||||||||| |||||||    
T  27396431 tagctcaactggcaaaatgccgaaattgttaggccggatgccatgattggggttcgaaccccggtacctcc 27396361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 35157201 - 35157131
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggaca-catgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || ||||||||| |||||||||| |||||   |||||| ||||||||||||||| |||||||    
T  35157201 tagctcaactggcaaaatgccgaaattgttaggccggatgtcatgaccggggttcgaaccccggtacctcc 35157131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 37410819 - 37410749
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggaca-catgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || ||||||||| |||||||||| |||||   |||||||||||||||||||| | |||||||    
T  37410819 tagctcaactggcaaaatgccgaaattgttaggccggatgtcatgactggggttcgaaccctgatacctcc 37410749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 45236941 - 45237011
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggaca-catgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || ||||||||| |||||||||| |||||   |||||| ||||||||||||||| |||||||    
T  45236941 tagctcaactggcaaaatgccgaaattgttaggccggatgtcatgaccggggttcgaaccccgatacctcc 45237011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 249
Target Start/End: Original strand, 33906305 - 33906362
Alignment:
Q  193 aaaatgccaaaattgttagaccggac-acatgactggggttcgaaccccgttacctcc 249  Q
    ||||||||||||||||||| ||||||  |||||| ||||||||||| ||| |||||||    
T  33906305 aaaatgccaaaattgttaggccggacgtcatgaccggggttcgaacaccggtacctcc 33906362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 217
Target Start/End: Original strand, 47182814 - 47182851
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccgga 217  Q
    |||||||| || ||||||||||||||||||||||||||    
T  47182814 tagctcaactggcaaaatgccaaaattgttagaccgga 47182851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 48612528 - 48612596
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggacac-atgactggggttcgaaccccgttacct 247  Q
    |||||||| || ||||||||| |||||||||| |||||  | ||||| ||||||||||||||| |||||    
T  48612528 tagctcaactggcaaaatgccgaaattgttaggccggatgccatgaccggggttcgaaccccggtacct 48612596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 28143349 - 28143279
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggacac-atgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || ||||||||| |||||||||| |||||  | ||||||||||||||||||||| |||||||    
T  28143349 tagctcaactggcaaaatgccgaaattgttaggccggatgccatgactggggttcgaaccccggtacctcc 28143279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 29806572 - 29806646
Alignment:
Q  174 aaatcatagctcaattgacaaaatgccaaaattgttagaccgga-cacatgactggggttcgaaccccgttacct 247  Q
    ||||| |||||||| ||  ||||||||||||||||||| |||||   |||||||||||||||||||||| |||||    
T  29806572 aaatcctagctcaactggtaaaatgccaaaattgttaggccggatgccatgactggggttcgaaccccggtacct 29806646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 40595968 - 40596037
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggacacatgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || ||||||||| |||||||||| |||    |||||||||||||||||||||| |||||||    
T  40595968 tagctcaactggcaaaatgccgaaattgttaggccgatgccatgactggggttcgaaccccggtacctcc 40596037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 10165546 - 10165613
Alignment:
Q  183 ctcaattgacaaaatgccaaaattgttagaccgga-cacatgactggggttcgaaccccgttacctcc 249  Q
    |||||||| ||||||||| ||||||||||||||||   |||||  ||||||||||||||| |||||||    
T  10165546 ctcaattggcaaaatgccgaaattgttagaccggatgccatgatcggggttcgaaccccggtacctcc 10165613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 1269636 - 1269566
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggacac-atgactggggttcgaaccccgttacctcc 249  Q
    |||||||| |||||||||| | |||||||||| |||||  | |||| |||||||||||||||| |||||||    
T  1269636 tagctcaactgacaaaatgtcgaaattgttaggccggatgccatgattggggttcgaaccccggtacctcc 1269566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 249
Target Start/End: Complemental strand, 1833440 - 1833366
Alignment:
Q  177 tcatagctcaattgacaaaa-tgccaaaattgttagaccggacac-atgactggggttcgaaccccgttacctcc 249  Q
    ||||||||||| || ||||| |||| |||||||||| ||||| || ||||| ||||||||||||||| |||||||    
T  1833440 tcatagctcaactggcaaaaatgccgaaattgttaggccggataccatgaccggggttcgaaccccgatacctcc 1833366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 4164970 - 4165040
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggaca-catgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || ||||||||| |||||||||| |||||   |||||| ||||||||||||||| |||||||    
T  4164970 tagctcaactggcaaaatgccgaaattgttaggccggatgtcatgaccggggttcgaaccccggtacctcc 4165040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 6029623 - 6029693
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccgga-cacatgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || ||||||| |||||||||||| |||||   |||| ||||||||||||||||| |||||||    
T  6029623 tagctcaactggcaaaatgtcaaaattgttaggccggatgtcatgcctggggttcgaaccccggtacctcc 6029693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 6053168 - 6053098
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccgga-cacatgactggggttcgaaccccgttacctcc 249  Q
    |||||||| |||||||||||| ||||||||||  ||||   |||||| ||||||||||||||| |||||||    
T  6053168 tagctcaactgacaaaatgccgaaattgttaggtcggatgtcatgaccggggttcgaaccccggtacctcc 6053098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 6672252 - 6672322
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggacac-atgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || ||||||||| |||||||||| |||||  | ||||| ||||||||||||||| |||||||    
T  6672252 tagctcaactggcaaaatgccgaaattgttaggccggatgccatgaccggggttcgaaccccggtacctcc 6672322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 17869241 - 17869171
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggacac-atgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || ||||||||| |||||||||| |||||  | ||||| ||||||||||||||| |||||||    
T  17869241 tagctcaactggcaaaatgccgaaattgttaggccggatgccatgaccggggttcgaaccccggtacctcc 17869171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 18473925 - 18473995
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggacac-atgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || ||||||||| |||||||||| |||||  | ||||| ||||||||||||||| |||||||    
T  18473925 tagctcaactggcaaaatgccgaaattgttaggccggatgccatgaccggggttcgaaccccggtacctcc 18473995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 23311290 - 23311220
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggacac-atgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || ||||||||| |||||||||| |||||  | ||||| ||||||||||||||| |||||||    
T  23311290 tagctcaactggcaaaatgccgaaattgttaggccggatgccatgaccggggttcgaaccccggtacctcc 23311220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 33028245 - 33028303
Alignment:
Q  184 tcaattgacaaaatgccaaaattgttagaccgga-cacatgactggggttcgaaccccg 241  Q
    |||| ||||||||||||||||||||||| |||||   |||||| |||||||||||||||    
T  33028245 tcaactgacaaaatgccaaaattgttaggccggatgtcatgaccggggttcgaaccccg 33028303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 34930236 - 34930306
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggacac-atgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || ||||||||| |||||||||| |||||  | ||||| ||||||||||||||| |||||||    
T  34930236 tagctcaactggcaaaatgccgaaattgttaggccggatgccatgaccggggttcgaaccccggtacctcc 34930306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 36569290 - 36569360
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggacac-atgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || ||||||||| |||||||||| |||||  | ||||| ||||||||||||||| |||||||    
T  36569290 tagctcaactggcaaaatgccgaaattgttaggccggatgccatgaccggggttcgaaccccggtacctcc 36569360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 249
Target Start/End: Complemental strand, 40318906 - 40318832
Alignment:
Q  177 tcatagctcaattgacaaaa-tgccaaaattgttagaccggacac-atgactggggttcgaaccccgttacctcc 249  Q
    ||||||||||| || ||||| |||| |||||||||| ||||| || ||||| ||||||||||||||| |||||||    
T  40318906 tcatagctcaactggcaaaaatgccgaaattgttaggccggataccatgaccggggttcgaaccccgatacctcc 40318832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 242
Target Start/End: Complemental strand, 13549274 - 13549205
Alignment:
Q  174 aaatcatagctcaattgacaaaatgccaaaattgttagaccggaca-catgactggggttcgaaccccgt 242  Q
    |||| ||||||||| || ||||||| ||||||| |||| ||||| | |||||| ||||||||||||||||    
T  13549274 aaattatagctcaactggcaaaatgtcaaaatttttaggccggatatcatgacaggggttcgaaccccgt 13549205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 32270904 - 32270860
Alignment:
Q  174 aaatcatagctcaattgacaaaatgccaaaattgttagaccggac 218  Q
    ||||| |||||||| |||  |||||||||||||||||||||||||    
T  32270904 aaatcctagctcaagtgatcaaatgccaaaattgttagaccggac 32270860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 15104055 - 15104124
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccgga-cacatgactggggttcgaaccccgttacctc 248  Q
    |||||||| ||||||||||||||||||||||| |||||   |||||  ||||||||||||||| ||||||    
T  15104055 tagctcaactgacaaaatgccaaaattgttaggccggatgtcatgatcggggttcgaaccccgatacctc 15104124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 249
Target Start/End: Complemental strand, 15324573 - 15324501
Alignment:
Q  177 tcatagctcaattgacaaaatgccaaaattgttagaccggacacatgactggggttcgaaccccgttacctcc 249  Q
    ||||||||||| |||||||||||| ||||| ||||  |||| |   ||||||||||||||||||| |||||||    
T  15324573 tcatagctcaactgacaaaatgccgaaattattaggtcggatatcagactggggttcgaaccccggtacctcc 15324501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 249
Target Start/End: Complemental strand, 32880693 - 32880626
Alignment:
Q  183 ctcaattgacaaaatgccaaaattgttagaccggacac-atgactggggttcgaaccccgttacctcc 249  Q
    ||||| || ||||||||| |||||||||| |||||  | ||||||||||||||||||||| |||||||    
T  32880693 ctcaactggcaaaatgccgaaattgttaggccggatgccatgactggggttcgaaccccgctacctcc 32880626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 9705550 - 9705600
Alignment:
Q  192 caaaatgccaaaattgttagaccgga-cacatgactggggttcgaaccccg 241  Q
    |||||||||||||||||||| |||||   ||||||||||||||||||||||    
T  9705550 caaaatgccaaaattgttaggccggatgccatgactggggttcgaaccccg 9705600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 10635500 - 10635570
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggacac-atgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || ||||||||| |||||||||| |||||  | ||||| ||||||||||||||| |||||||    
T  10635500 tagctcaactggcaaaatgccgaaattgttaggccggatgccatgaccggggttcgaaccccggtacctcc 10635570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 13018084 - 13018154
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccgga-cacatgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || |||| |||| ||||||||||||||||   |||||| ||||||||||||||| |||||||    
T  13018084 tagctcaactggcaaagtgccgaaattgttagaccggatgccatgaccggggttcgaaccccggtacctcc 13018154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 249
Target Start/End: Complemental strand, 18089881 - 18089815
Alignment:
Q  184 tcaattgacaaaatgccaaaattgttagaccggaca-catgactggggttcgaaccccgttacctcc 249  Q
    |||| |||||||||||| |||||||||| |||||   |||||| ||||||||||||||| |||||||    
T  18089881 tcaactgacaaaatgccgaaattgttaggccggatgtcatgaccggggttcgaaccccggtacctcc 18089815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 19338295 - 19338225
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggacac-atgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || ||||||||| |||||||||| |||||  | ||||| ||||||||||||||| |||||||    
T  19338295 tagctcaactggcaaaatgccgaaattgttaggccggatgccatgaccggggttcgaaccccggtacctcc 19338225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 20164190 - 20164120
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggacac-atgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || ||||||||| |||||||||| |||||  | ||||| ||||||||||||||| |||||||    
T  20164190 tagctcaactggcaaaatgccgaaattgttaggccggatgccatgaccggggttcgaaccccggtacctcc 20164120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 29005101 - 29005171
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggacac-atgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || ||||||||| |||||||||| |||||  | ||||| ||||||||||||||| |||||||    
T  29005101 tagctcaactggcaaaatgccgaaattgttaggccggatgccatgaccggggttcgaaccccggtacctcc 29005171  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 33845721 - 33845651
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccgga-cacatgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || ||||||||| ||||||||||||||||   |||||| || |||||||||||| |||||||    
T  33845721 tagctcaactggcaaaatgccgaaattgttagaccggatgtcatgaccggagttcgaaccccggtacctcc 33845651  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 33948257 - 33948327
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccgga-cacatgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || ||||||||| ||||||||||||||||   |||||| || |||||||||||| |||||||    
T  33948257 tagctcaactggcaaaatgccgaaattgttagaccggatgtcatgaccggagttcgaaccccggtacctcc 33948327  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 48314178 - 48314248
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggaca-catgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || ||||||||| |||||||||| |||||   |||||| ||||||||||||||| |||||||    
T  48314178 tagctcaactggcaaaatgccgaaattgttaggccggatgtcatgaccggggttcgaaccccggtacctcc 48314248  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 249
Target Start/End: Complemental strand, 7204612 - 7204555
Alignment:
Q  193 aaaatgccaaaattgttagaccggaca-catgactggggttcgaaccccgttacctcc 249  Q
    |||||||| |||||||||| ||| ||| |||||| ||||||||||||||| |||||||    
T  7204612 aaaatgccgaaattgttaggccgaacatcatgaccggggttcgaaccccgatacctcc 7204555  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 248
Target Start/End: Complemental strand, 48731873 - 48731804
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccgga-cacatgactggggttcgaaccccgttacctc 248  Q
    |||||||| |||||||||||| |||||||||| || ||   |||||| ||||||||||||||| ||||||    
T  48731873 tagctcaactgacaaaatgccgaaattgttaggccagatgccatgaccggggttcgaaccccggtacctc 48731804  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 247
Target Start/End: Complemental strand, 43676141 - 43676073
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggacac-atgactggggttcgaaccccgttacct 247  Q
    |||||||| || ||||||||| |||||||||| |||||  | ||||| ||||||||||||||| |||||    
T  43676141 tagctcaactggcaaaatgccgaaattgttaggccggatgccatgaccggggttcgaaccccggtacct 43676073  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 4480488 - 4480555
Alignment:
Q  183 ctcaattgacaaaatgccaaaattgttagaccggacac-atgactggggttcgaaccccgttacctcc 249  Q
    ||||| || ||||||||| |||||||||| |||||  | |||| ||||||||||||||||||||||||    
T  4480488 ctcaactggcaaaatgccgaaattgttaggccggatgccatgattggggttcgaaccccgttacctcc 4480555  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 1241606 - 1241676
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggaca-catgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || ||||||||| |||||||||| |||||   |||||| ||||||||||||||| |||||||    
T  1241606 tagctcaactggcaaaatgccgaaattgttaggccggatgtcatgaccggggttcgaaccccgctacctcc 1241676  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 2314716 - 2314646
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggaca-catgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || ||||||||| |||||||||| |||||   |||||| ||||||||||||||| |||||||    
T  2314716 tagctcaactggcaaaatgccgaaattgttaggccggatgtcatgaccggggttcgaaccccggtacctcc 2314646  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 8448259 - 8448189
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggacac-atgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || ||||||||| |||||||||| |||||  | ||||| ||||||||||||||| |||||||    
T  8448259 tagctcaactggcaaaatgccgaaattgttaggccggatgccatgaccggggttcgaaccccggtacctcc 8448189  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 8457063 - 8456993
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggacac-atgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || ||||||||| |||||||||| |||||  | ||||| ||||||||||||||| |||||||    
T  8457063 tagctcaactggcaaaatgccgaaattgttaggccggatgccatgaccggggttcgaaccccggtacctcc 8456993  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 27866600 - 27866636
Alignment:
Q  181 agctcaattgacaaaatgccaaaattgttagaccgga 217  Q
    |||||||||| |||||||||||||||||||| |||||    
T  27866600 agctcaattggcaaaatgccaaaattgttaggccgga 27866636  T

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Target: scaffold0402 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0402
Description:

Target: scaffold0402; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 1358 - 1288
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggacac-atgactggggttcgaaccccgttacctcc 249  Q
    |||||||| || ||||||||| |||||||||| |||||  | ||||| ||||||||||||||| |||||||    
T  1358 tagctcaactggcaaaatgccgaaattgttaggccggatgccatgaccggggttcgaaccccggtacctcc 1288  T

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Target: scaffold0515 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 249
Target Start/End: Original strand, 2486 - 2559
Alignment:
Q  177 tcatagctcaattgacaaaatgccaaaattgttagaccggacac-atgactggggttcgaaccccgttacctcc 249  Q
    ||||| ||||| |||||||||| | |||||||||| |||||  | ||||| ||||||||||||||| |||||||    
T  2486 tcataactcaactgacaaaatgtcgaaattgttaggccggatgctatgaccggggttcgaaccccggtacctcc 2559  T

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Target: scaffold0306 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 249
Target Start/End: Original strand, 2486 - 2559
Alignment:
Q  177 tcatagctcaattgacaaaatgccaaaattgttagaccggacac-atgactggggttcgaaccccgttacctcc 249  Q
    ||||| ||||| |||||||||| | |||||||||| |||||  | ||||| ||||||||||||||| |||||||    
T  2486 tcataactcaactgacaaaatgtcgaaattgttaggccggatgctatgaccggggttcgaaccccggtacctcc 2559  T

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Target: scaffold0882 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0882
Description:

Target: scaffold0882; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 3814 - 3754
Alignment:
Q  180 tagctcaattgacaaaatgccaaaattgttagaccggacac-atgactggggttcgaaccc 239  Q
    |||||||| || ||||||||| |||||||||| |||||  | |||||||||||||||||||    
T  3814 tagctcaactggcaaaatgccgaaattgttaggccggatgctatgactggggttcgaaccc 3754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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