View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6966_low_2 (Length: 662)

Name: NF6966_low_2
Description: NF6966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6966_low_2
NF6966_low_2
[»] chr4 (37 HSPs)
chr4 (16-640)||(12121055-12121680)
chr4 (42-608)||(1488991-1489558)
chr4 (42-608)||(1537418-1537964)
chr4 (36-299)||(1513346-1513607)
chr4 (288-640)||(1504712-1505061)
chr4 (39-220)||(1508021-1508203)
chr4 (46-401)||(546819-547175)
chr4 (166-381)||(1600446-1600661)
chr4 (119-381)||(55908585-55908847)
chr4 (45-371)||(553384-553711)
chr4 (73-208)||(640849-640984)
chr4 (119-237)||(8184031-8184149)
chr4 (27-234)||(1552771-1552982)
chr4 (73-236)||(7307794-7307957)
chr4 (119-370)||(8186959-8187210)
chr4 (132-234)||(1548428-1548530)
chr4 (129-237)||(1524487-1524595)
chr4 (129-412)||(558488-558771)
chr4 (80-378)||(3438426-3438723)
chr4 (172-237)||(532222-532287)
chr4 (51-237)||(55505109-55505293)
chr4 (177-237)||(1519143-1519203)
chr4 (168-225)||(659738-659795)
chr4 (168-236)||(1545802-1545870)
chr4 (167-237)||(12116576-12116646)
chr4 (36-107)||(1534122-1534194)
chr4 (310-401)||(532354-532445)
chr4 (123-234)||(570335-570446)
chr4 (434-485)||(1487031-1487082)
chr4 (43-157)||(7225964-7226079)
chr4 (131-237)||(53761773-53761877)
chr4 (335-381)||(570727-570773)
chr4 (343-401)||(1548263-1548321)
chr4 (569-602)||(558919-558952)
chr4 (132-237)||(566182-566287)
chr4 (43-107)||(644734-644799)
chr4 (343-411)||(21834208-21834276)
[»] chr8 (7 HSPs)
chr8 (61-444)||(18315067-18315451)
chr8 (80-392)||(32151242-32151551)
chr8 (73-236)||(27922442-27922605)
chr8 (123-237)||(34936164-34936278)
chr8 (345-400)||(17627897-17627952)
chr8 (188-234)||(21235607-21235653)
chr8 (194-238)||(17636401-17636445)
[»] chr3 (6 HSPs)
chr3 (52-237)||(51113782-51113968)
chr3 (54-400)||(13470573-13470917)
chr3 (131-237)||(51120894-51121000)
chr3 (119-413)||(51764268-51764559)
chr3 (46-160)||(514806-514921)
chr3 (357-411)||(51113611-51113665)
[»] chr2 (4 HSPs)
chr2 (119-381)||(1037521-1037783)
chr2 (44-237)||(45245086-45245280)
chr2 (168-401)||(32785612-32785842)
chr2 (332-378)||(44575459-44575505)
[»] chr6 (24 HSPs)
chr6 (54-237)||(6415880-6416064)
chr6 (129-319)||(6402850-6403040)
chr6 (61-205)||(6585270-6585415)
chr6 (73-237)||(19632373-19632537)
chr6 (342-401)||(9411555-9411614)
chr6 (131-237)||(6394856-6394962)
chr6 (167-379)||(7119185-7119394)
chr6 (167-379)||(7131663-7131872)
chr6 (76-234)||(9411292-9411450)
chr6 (166-232)||(14802363-14802429)
chr6 (168-237)||(6432190-6432259)
chr6 (168-402)||(6594445-6594676)
chr6 (152-208)||(6596958-6597014)
chr6 (43-234)||(11936279-11936471)
chr6 (43-234)||(11948259-11948451)
chr6 (73-236)||(6603204-6603367)
chr6 (24-94)||(28934933-28935004)
chr6 (166-208)||(10579766-10579808)
chr6 (52-237)||(14820605-14820791)
chr6 (123-236)||(6423201-6423314)
chr6 (168-237)||(6589324-6589393)
chr6 (129-237)||(6409996-6410104)
chr6 (73-237)||(7994183-7994347)
chr6 (188-234)||(12102315-12102361)
[»] chr5 (8 HSPs)
chr5 (73-231)||(41901542-41901700)
chr5 (168-236)||(41889556-41889624)
chr5 (45-232)||(38267562-38267750)
chr5 (131-208)||(20478112-20478189)
chr5 (128-231)||(37937876-37937979)
chr5 (73-236)||(32267409-32267572)
chr5 (343-381)||(37938092-37938130)
chr5 (342-379)||(41901397-41901434)
[»] chr1 (6 HSPs)
chr1 (73-205)||(7554422-7554554)
chr1 (168-225)||(9586668-9586725)
chr1 (168-234)||(19468503-19468569)
chr1 (170-236)||(52082612-52082678)
chr1 (343-400)||(19468340-19468397)
chr1 (168-237)||(43634936-43635005)
[»] chr7 (3 HSPs)
chr7 (52-237)||(15092152-15092338)
chr7 (343-381)||(10614794-10614832)
chr7 (123-223)||(10614577-10614677)
[»] scaffold0295 (2 HSPs)
scaffold0295 (166-237)||(625-696)
scaffold0295 (310-367)||(495-552)
[»] scaffold0807 (1 HSPs)
scaffold0807 (174-236)||(1466-1528)
[»] scaffold0041 (1 HSPs)
scaffold0041 (119-208)||(39164-39253)


Alignment Details
Target: chr4 (Bit Score: 570; Significance: 0; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 16 - 640
Target Start/End: Complemental strand, 12121680 - 12121055
Alignment:
Q  16 acatcacaatgcacttgaagacaatatttcaaatcgatctctcttagttgtgtgcacttt-ctaccacatgcttcactcccatctctgtgacaacaatac 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||  |    
T  12121680 acatcacaatgcacttgaagacaatatttcaaatcgatctctcttagttgtgtgcatttttctaccacatgcttcactcccatctctgtgacaaaaaagc 12121581  T
Q  115 accattccagtaagagttgcaaaagcccacggcaacactttgagattacggagagtgtttcatcatcaacatttgtatatgacaagttcaacacttctag 214  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12121580 accattccagtgagagttgcaaaagcccacggcaacactttgagattacggagagtgtttcatcatcaacatttgtatatgacaagttcaacacttctag 12121481  T
Q  215 tttgggaactttaaagttcattcggcgcagcttccttcctaaacaactggttaagttcaaatgcgtaatctcggaacatgtccttaagacttggaaaata 314  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12121480 tttgggaacttcaaagttcattcggcgcagcttccttcctaaacaactggttaagttcaaatgcgtaatctcggaacatgtccttaagacttggaaaata 12121381  T
Q  315 ccttcttcagatgtgttatagcaaaaactcaaatcaagcaattgcaaattggggaaaatggaagcaatccttttgatgctttcatcttgtaaccatgtac 414  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  12121380 ccttcttcagatatgttatagcaaaaactcaaatcaagcaattgcaaattggggaaaacggaagcaatccttttgatgctttcatcttgtaaccatgtac 12121281  T
Q  415 tcgaaatcaaatgaagagactttaattgagtactaacaacaaaggaattagaattgtctgcactattatttgtttgtgtgttttttattctaatagaaaa 514  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12121280 tcgaaatcaaatggagagactttaattgagtactaacaacaaaggaattagaattgtctgcactattatttgtttgtgtgttttttattctaatagaaaa 12121181  T
Q  515 ggctatggaggaaagccaagaaaatatgtcaccaccatagtagtgagtgaggcggagggaggtgaggttagggaatctttggaagagtccactggggcga 614  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |    
T  12121180 ggctatggaggaaagccaacaaaatatgtcaccaccatagtagtgagtgaggcggagagaggtgaggttagggaatctttggaagagtccactggggcaa 12121081  T
Q  615 atccgggttgggtgacggatagttat 640  Q
    ||||||||||||||||||||||||||    
T  12121080 atccgggttgggtgacggatagttat 12121055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 42 - 608
Target Start/End: Complemental strand, 1489558 - 1488991
Alignment:
Q  42 tttcaaatcgatctctcttagttgtgtgcacttt-ctaccacatgcttcactcccatctctgtgacaacaatacaccattccagtaagagttgcaaaagc 140  Q
    |||||||| ||||||||||||||||| ||| ||| ||| |||||||||||||||| |||||||||||  || ||||| ||||||||||||||||||||||    
T  1489558 tttcaaattgatctctcttagttgtgcgcatttttctagcacatgcttcactcccttctctgtgacattaaaacacccttccagtaagagttgcaaaagc 1489459  T
Q  141 ccacggcaacactttgagattacggagagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcattcggc 240  Q
    |||||||||||| ||||||||||  | |||||||| |  | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||    
T  1489458 ccacggcaacacattgagattacacacagtgtttcgttgttaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattccgc 1489359  T
Q  241 gcagcttccttcctaaacaactggttaagttcaaatgcgtaatctcggaacatgtccttaagacttggaaaataccttcttcagatgtgttatagcaaaa 340  Q
     ||||||| |||||||| | ||  |||||||||||||| |||| || ||||||||| |||| || ||||||||||||||||||||| ||||||||||| |    
T  1489358 acagcttctttcctaaagatcttcttaagttcaaatgcctaatatcagaacatgtctttaaaacatggaaaataccttcttcagatatgttatagcaata 1489259  T
Q  341 actcaaatcaagcaattgcaaattggggaaaatggaagcaatccttttgatgctttcatcttgtaaccatgtactcgaaatcaaatgaagagactttaat 440  Q
    | |||||| ||||||||||||||||||||||| || ||||||| |||  |||||||||||| |||  | || | ||||||||||||| ||||||||||||    
T  1489258 agtcaaattaagcaattgcaaattggggaaaagggcagcaatcatttctatgctttcatctcgtattcgtgaattcgaaatcaaatggagagactttaat 1489159  T
Q  441 tgagtactaacaacaaaggaattagaattgtctgcactattatttgtttgtgtgttttttattctaatagaaaaggctatggaggaaagccaagaaaata 540  Q
    ||||   | || || || ||||||||||||||| ||||||| ||| ||| ||||| ||| ||| |||| ||| |||||||||||||||||||| |||||     
T  1489158 tgagggatgacgacgaaagaattagaattgtctacactattttttttttttgtgtatttcattttaatggaagaggctatggaggaaagccaacaaaatg 1489059  T
Q  541 tgtcaccaccatagtagtgagtgaggcggagggaggtgaggttagggaatctttggaagagtccactg 608  Q
    |||||    | |||||||||||||||| || ||||||||||||||||||||||||||| |||| ||||    
T  1489058 tgtcattgtcgtagtagtgagtgaggcagatggaggtgaggttagggaatctttggaaaagtcgactg 1488991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 42 - 608
Target Start/End: Complemental strand, 1537964 - 1537418
Alignment:
Q  42 tttcaaatcgatctctcttagttgtgtgcacttt-ctaccacatgcttcactcccatctctgtgacaacaatacaccattccagtaagagttgcaaaagc 140  Q
    |||||||| ||||||||||||||| ||||| ||| ||| ||||| |||||||||| ||| |||||||| |  |||   ||||||||| ||||||||||||    
T  1537964 tttcaaattgatctctcttagttgagtgcatttttctagcacatacttcactcccttctgtgtgacaagataacaaagttccagtaaaagttgcaaaagc 1537865  T
Q  141 ccacggcaacactttgagattacggagagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcattcggc 240  Q
    ||||| |||||||||||||||||  | |||||||  |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||       
T  1537864 ccacgacaacactttgagattacacacagtgttttgtcattaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattccat 1537765  T
Q  241 gcagcttccttcctaaacaactggttaagttcaaatgcgtaatctcggaacatgtccttaagacttggaaaataccttcttcagatgtgttatagcaaaa 340  Q
    |||||||||  |||    | | |||||||||||||||| ||| |||||||||||||||||| ||||| |||||||||||||||||| |   | ||||| |    
T  1537764 gcagcttccaacctcttaagccggttaagttcaaatgcctaagctcggaacatgtccttaaaacttgaaaaataccttcttcagatattggaaagcaata 1537665  T
Q  341 actcaaatcaagcaattgcaaattggggaaaatggaagcaatccttttgatgctttcatcttgtaaccatgtactcgaaatcaaatgaagagactttaat 440  Q
    |||||||| || |||||||||||| |||||||  ||||||||| |||||| ||||| ||||  |||||||  ||||||||||||||| ||||||||||||    
T  1537664 actcaaattaaacaattgcaaattcgggaaaactgaagcaatcattttgaagcttttatctcttaaccattgactcgaaatcaaatggagagactttaat 1537565  T
Q  441 tgagtactaacaacaaaggaattagaattgtctgcactattatttgtttgtgtgttttttattctaatagaaaaggctatggaggaaagccaagaaaata 540  Q
    ||||  || ||||  ||||| |||||||||||| ||||||      ||||||||  ||| |||||||| ||| |||| | ||||||                  
T  1537564 tgagggctgacaaataaggagttagaattgtctacactat------tttgtgtgcatttcattctaatggaagaggcgagggagga-------------- 1537485  T
Q  541 tgtcaccaccatagtagtgagtgaggcggagggaggtgaggttagggaatctttggaagagtccactg 608  Q
     |||  |||  |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  1537484 -gtcgtcacggtagtagtgagtgaggcagagggaggtgaggttagggaatctttggaagagtcgactg 1537418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 36 - 299
Target Start/End: Complemental strand, 1513607 - 1513346
Alignment:
Q  36 acaatatttcaaatcgatctctcttagttgtgtgcacttt-ctaccacatgcttcactcccatctctgtgacaacaatacaccattccagtaagagttgc 134  Q
    |||||||||||||| ||||||||| ||||||||||| ||| ||| |||| ||||||||||||||||||||||||   |||| | || ||||| |||||||    
T  1513607 acaatatttcaaattgatctctctcagttgtgtgcatttttctagcacaagcttcactcccatctctgtgacaa---tacaacctttcagtatgagttgc 1513511  T
Q  135 aaaagcccacggcaacactttgagattacggagagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttca 234  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  1513510 aaaagcccacgacaacactttgagattacgtagagtgtttcatcatcaacatttgtaaatgacaagttcaacacttctagtttgggaacttcaaagttca 1513411  T
Q  235 ttcggcgcagcttccttcctaaacaactggttaagttcaaatgcgtaatctcggaacatgtcctt 299  Q
    ||| || ||||| | |||||||| |  | |||| ||| |||||| ||||||| |||||| |||||    
T  1513410 ttccgcacagctcctttcctaaatagtttgttatgtttaaatgcctaatctcagaacatatcctt 1513346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 288 - 640
Target Start/End: Complemental strand, 1505061 - 1504712
Alignment:
Q  288 gaacatgtccttaagacttggaaaataccttcttcagatgtgttatagcaaaaactcaaatcaagcaattgcaaattggggaaaatggaagcaatccttt 387  Q
    |||||||||||||| || ||||||||||||||||||||| |||||| |||| |||| |||| || |||||||||||||||||||| |||||||||| |||    
T  1505061 gaacatgtccttaaaacatggaaaataccttcttcagatatgttatggcaataactaaaattaaccaattgcaaattggggaaaacggaagcaatcgttt 1504962  T
Q  388 tgatgctttcatcttgtaaccatgtactcgaaatcaaatgaagagactttaattgagtactaacaacaaaggaattagaattgtctgcactattatttgt 487  Q
     ||||||||||||| |||| |||| | |  |||||||||| ||||||||||||||||  |  ||||||||||||||||| |||||| ||||||||    |    
T  1504961 ggatgctttcatctcgtaaacatggattaaaaatcaaatggagagactttaattgagggcctacaacaaaggaattagacttgtctacactatta---at 1504865  T
Q  488 ttgtgtgttttttattctaatagaaaaggctatggaggaaagccaagaaaatatgtcaccaccatagtagtgagtgaggcggagggaggtgaggttaggg 587  Q
    ||  |||| ||| |  ||||| ||  |||| | |||||||| |||| ||||||||||  ||| | |||||||||  ||||||||||||||||||||||||    
T  1504864 tttagtgtatttcagactaatggaggaggcaagggaggaaatccaacaaaatatgtcgtcacaaaagtagtgagcaaggcggagggaggtgaggttaggg 1504765  T
Q  588 aatctttggaagagtccactggggcgaatccgggttgggtgacggatagttat 640  Q
    |||||||||||||||| |||| ||| ||  | |||||||| || |||||||||    
T  1504764 aatctttggaagagtcaactgaggcaaaggcaggttgggtcacagatagttat 1504712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 39 - 220
Target Start/End: Complemental strand, 1508203 - 1508021
Alignment:
Q  39 atatttcaaatcgatctctcttagttgtgtgcacttt-ctaccacatgcttcactcccatctctgtgacaacaatacaccattccagtaagagttgcaaa 137  Q
    ||||||||||| ||||||||||||||||||||| ||| ||| | ||||||||||||||||||| |||||  ||  ||| |  ||||| | ||||||||||    
T  1508203 atatttcaaattgatctctcttagttgtgtgcatttttctagcgcatgcttcactcccatctcggtgactgcagcacaaccatccagcacgagttgcaaa 1508104  T
Q  138 agcccacggcaacactttgagattacggagagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttggg 220  Q
    |||||||| |||||||||||||||||  | |||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  1508103 agcccacgacaacactttgagattacacacagtgtttcatcatcaacattggtatgtgacaagttcaacacttctagtttggg 1508021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 46 - 401
Target Start/End: Original strand, 546819 - 547175
Alignment:
Q  46 aaatcgatctctcttagttgtgtgcacttt-ctaccacatgcttcactcccatctctgtgacaacaatacaccattccagtaagagttgcaaaagcccac 144  Q
    |||| |||||||||||||| |||||| ||| ||| |||||| ||||||||| |||||||||||  || |||   ||||||||| | || |||||||||||    
T  546819 aaattgatctctcttagttttgtgcagttttctagcacatgtttcactcccttctctgtgacatgaaaacattcttccagtaacaattccaaaagcccac 546918  T
Q  145 ggcaacactttgagattacggagagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcattcggcgcag 244  Q
      |||| ||||||||| ||  |||||||||||||||  ||| |||||  ||||||||||| ||| || | ||| ||||||| |||||||||||     ||    
T  546919 aacaactctttgagatcacatagagtgtttcatcattgacaattgtacgtgacaagttcaccacctccaatttaggaacttcaaagttcattccaaatag 547018  T
Q  245 cttccttcctaaacaactggttaagttcaaatgcgtaatctcggaacatgtccttaagacttggaaaataccttcttcagatgtgttatagcaaaaactc 344  Q
     |||  | |||||||| ||| ||||||||||||| | ||||   ||||| ||||||| || |   ||||||  ||||||||| |||||   ||| ||||     
T  547019 gttcactactaaacaattggataagttcaaatgccttatcttacaacatctccttaaaacatcacaaatactgtcttcagatatgttacgacaataactt 547118  T
Q  345 aaatcaagcaattgcaaattggggaaaatggaagcaatccttttgatgctttcatct 401  Q
    |||||||||| ||||||||||||||| ||||||| || | |||||||||||||||||    
T  547119 aaatcaagcagttgcaaattggggaacatggaaggaaacattttgatgctttcatct 547175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 166 - 381
Target Start/End: Original strand, 1600446 - 1600661
Alignment:
Q  166 agagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcattcggcgcagcttccttcctaaacaactggt 265  Q
    |||||| |||||| |||||  |||||||||||||||||||||| || |||||  |||||| |||||||||||  ||||||||| ||  | ||||   ||     
T  1600446 agagtgcttcatcgtcaacccttgtatatgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgggc 1600545  T
Q  266 taagttcaaatgcgtaatctcggaacatgtccttaagacttggaaaataccttcttcagatgtgttatagcaaaaactcaaatcaagcaattgcaaattg 365  Q
    ||||||||||||  |||| |  ||| || ||||||| |||||  ||||||||||||||||| |||||  ||||   ||||||||||||| ||||||||||    
T  1600546 taagttcaaatgtctaattttagaaaatctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgcaaattg 1600645  T
Q  366 gggaaaatggaagcaa 381  Q
    || ||| |||||||||    
T  1600646 ggaaaattggaagcaa 1600661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 119 - 381
Target Start/End: Complemental strand, 55908847 - 55908585
Alignment:
Q  119 ttccagtaagagttgcaaaagcccacggcaacactttgagattacggagagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttg 218  Q
    |||||| || ||||| ||||||||||  |||  ||||||||| |   ||||||||||||||||||||  ||||| ||||||||| ||||| |||| ||      
T  55908847 ttccagaaacagttgtaaaagcccacaacaattctttgagatcatatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctctaattca 55908748  T
Q  219 ggaactttaaagttcattcggcgcagcttccttcctaaacaactggttaagttcaaatgcgtaatctcggaacatgtccttaagacttggaaaatacctt 318  Q
    |||||||||||||| ||||   | || |||  || | ||||   || ||| ||||||||  ||| ||   ||||| ||||||  ||||   |||||||||    
T  55908747 ggaactttaaagtttattctaagtagtttcactcttgaacagtaggctaaattcaaatgtctaaccttacaacatctccttagaacttcacaaatacctt 55908648  T
Q  319 cttcagatgtgttatagcaaaaactcaaatcaagcaattgcaaattggggaaaatggaagcaa 381  Q
    |||||||| |||||| |||  | ||||||||||| ||||||||||||||||||||||||||||    
T  55908647 cttcagatatgttatggcaggagctcaaatcaagaaattgcaaattggggaaaatggaagcaa 55908585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 45 - 371
Target Start/End: Original strand, 553384 - 553711
Alignment:
Q  45 caaatcgatctctcttagttgtgtgcacttt-ctaccacatgcttcactcccatctctgtgacaacaatacaccattccagtaagagttgcaaaagccca 143  Q
    ||||||||||||||| ||||||||||| ||| |||||||||| ||||||||  | ||||||||| || ||||  |   ||  || |||||||||||||||    
T  553384 caaatcgatctctctaagttgtgtgcagttttctaccacatgattcactcctttatctgtgacatcactacaataaaacaacaacagttgcaaaagccca 553483  T
Q  144 cggcaacactttgagattacggagagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcattcggcgca 243  Q
       |||| |||||| || ||    |||| ||||||||||||  ||||| |||||||||||||||| || |||||| ||||||||||||||| |   || |    
T  553484 gaacaactctttgaaatcacattaagtgcttcatcatcaactcttgtaaatgacaagttcaacacctccagtttgagaactttaaagttcaatgtacgta 553583  T
Q  244 gcttccttcctaaacaactggttaagttcaaatgcgtaatctcggaacatgtccttaagacttggaaaataccttcttcagatgtgttatagcaaaaact 343  Q
     ||||  || | |||| | |||||||||||||||  |||| |   ||||||||||||| || || | || | |||||||||||   |  ||| || | ||    
T  553584 acttcactcttgaacagcgggttaagttcaaatgtctaatgttacaacatgtccttaaaacatgaacaacagcttcttcagatacatcgtaggaatatct 553683  T
Q  344 caaatcaagcaattgcaaattggggaaa 371  Q
    |||||||||||  |||||||||||||||    
T  553684 caaatcaagcatctgcaaattggggaaa 553711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 73 - 208
Target Start/End: Original strand, 640849 - 640984
Alignment:
Q  73 tttctaccacatgcttcactcccatctctgtgacaacaatacaccattccagtaagagttgcaaaagcccacggcaacactttgagattacggagagtgt 172  Q
    ||||||||||||| ||||||||| ||| ||| |||  |  |||   ||||||||| || |||||||| |||||||||  ||||||| | ||| |||||||    
T  640849 tttctaccacatgattcactcccttctttgttacataatgacaatcttccagtaacagatgcaaaagaccacggcaattctttgaggtcacgtagagtgt 640948  T
Q  173 ttcatcatcaacatttgtatatgacaagttcaacac 208  Q
    |||||||||||| ||||||| |||||||||||||||    
T  640949 ttcatcatcaacgtttgtatctgacaagttcaacac 640984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 119 - 237
Target Start/End: Complemental strand, 8184149 - 8184031
Alignment:
Q  119 ttccagtaagagttgcaaaagcccacggcaacactttgagattacggagagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttg 218  Q
    ||||||||| |||| |||||||||||  |||| |||||||||| |  |||||| |  |||||||||  |||||| ||||||||||||||| ||||||||     
T  8184149 ttccagtaacagttccaaaagcccacaacaactctttgagattgcatagagtgctatatcatcaactcttgtatgtgacaagttcaacacctctagtttc 8184050  T
Q  219 ggaactttaaagttcattc 237  Q
    ||||||| |||||||||||    
T  8184049 ggaacttcaaagttcattc 8184031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 27 - 234
Target Start/End: Complemental strand, 1552982 - 1552771
Alignment:
Q  27 cacttgaagacaatatttcaaatcgatctctcttagttgtgtgcacttt-ctaccacatgcttcactcccatctctgtgaca--acaat-acaccattcc 122  Q
    ||||| |||||||  |||||||| |||||||||||||||   ||| ||| || | ||||||||||||||| |||| ||||||  | ||| |||   |||     
T  1552982 cactttaagacaacctttcaaattgatctctcttagttgcaagcaattttctccgacatgcttcactcccttctcggtgacataataattacattgttct 1552883  T
Q  123 agtaagagttgcaaaagcccacggcaacactttgagattacggagagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaa 222  Q
    ||||| || |||||||||||||| |||  |||||| || ||   |||||||||||||| || |||||||| |||||| ||||||||||| ||||||||||    
T  1552882 agtaacagctgcaaaagcccacgacaattctttgatatcacattgagtgtttcatcattaatatttgtatgtgacaaattcaacacttccagtttgggaa 1552783  T
Q  223 ctttaaagttca 234  Q
     || ||||||||    
T  1552782 tttcaaagttca 1552771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 73 - 236
Target Start/End: Original strand, 7307794 - 7307957
Alignment:
Q  73 tttctaccacatgcttcactcccatctctgtgacaacaatacaccattccagtaagagttgcaaaagcccacggcaacactttgagattacggagagtgt 172  Q
    |||||||||||||||||| |||  ||   ||||||| || ||| | ||||||||| || |||||||||| ||  |||| ||||||||| |     ||||     
T  7307794 tttctaccacatgcttcaatccagtcatcgtgacaataaaacaaccttccagtaacaggtgcaaaagcctacaacaactctttgagatcatacgtagtgc 7307893  T
Q  173 ttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcatt 236  Q
    |||||||||||| | |||||||||||||||||| || || | ||||||||||||||||||||||    
T  7307894 ttcatcatcaacttctgtatatgacaagttcaatacctccaatttgggaactttaaagttcatt 7307957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 119 - 370
Target Start/End: Complemental strand, 8187210 - 8186959
Alignment:
Q  119 ttccagtaagagttgcaaaagcccacggcaacactttgagattacggagagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttg 218  Q
    ||||||||| |  |||||||||||||  |||| |||||| ||| |  | ||||||| |||||||||  |||||| ||||||||||||||| || ||||||    
T  8187210 ttccagtaacaactgcaaaagcccacaacaactctttgaaattgcataaagtgttttatcatcaactcttgtatgtgacaagttcaacacctccagtttg 8187111  T
Q  219 ggaactttaaagttcattcggcgcagcttccttcctaaacaactggttaagttcaaatgcgtaatctcggaacatgtccttaagacttggaaaatacctt 318  Q
    | || || ||||||||||| |   |||     || |  |||   || ||||||||||| | |||||||  ||||| || | || |||||  |||||||||    
T  8187110 gaaatttcaaagttcattccggagagcccaactcttggacagtaggctaagttcaaatccctaatctcacaacatctcttcaaaacttgacaaatacctt 8187011  T
Q  319 cttcagatgtgttatagcaaaaactcaaatcaagcaattgcaaattggggaa 370  Q
    |||||||| ||| |||||||  ||||||||||||||| ||||||||||||||    
T  8187010 cttcagatatgtcatagcaatgactcaaatcaagcaactgcaaattggggaa 8186959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 132 - 234
Target Start/End: Complemental strand, 1548530 - 1548428
Alignment:
Q  132 tgcaaaagcccacggcaacactttgagattacggagagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagt 231  Q
    |||||||||||||  |||| ||||||||| ||   ||||||||||||||||| | |||||| ||||||||||||||| || |||||||||| || |||||    
T  1548530 tgcaaaagcccacaacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagt 1548431  T
Q  232 tca 234  Q
    |||    
T  1548430 tca 1548428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 129 - 237
Target Start/End: Complemental strand, 1524595 - 1524487
Alignment:
Q  129 agttgcaaaagcccacggcaacactttgagattacggagagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaa 228  Q
    ||||||||||||||||| |||| || |||||| |   |||||||||||||||||||| |||||  |||||| |||||||| || |  |||||||||| ||    
T  1524595 agttgcaaaagcccacgacaactctgtgagatcatatagagtgtttcatcatcaacacttgtacgtgacaaattcaacacctccaaattgggaacttcaa 1524496  T
Q  229 agttcattc 237  Q
    |||||||||    
T  1524495 agttcattc 1524487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 412
Target Start/End: Original strand, 558488 - 558771
Alignment:
Q  129 agttgcaaaagcccacggcaacactttgagattacggagagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaa 228  Q
    |||| |||||||||||| |||| ||||||||| ||   ||||| ||||||||||| || |||  ||||||||||||||||  |||| |||| ||||| ||    
T  558488 agttccaaaagcccacgacaactctttgagatcacatggagtgcttcatcatcaatatatgttaatgacaagttcaacacccctaggttggcaacttcaa 558587  T
Q  229 agttcattcggcgcagcttccttcctaaacaactggttaagttcaaatgcgtaatctcggaacatgtccttaagacttggaaaataccttcttcagatgt 328  Q
    |||||  ||   | |  ||  ||||||||||    |||| | |||||||  |||| |  |||||||||||||| || ||  ||||||||| ||| ||| |    
T  558588 agttcgctccaggtatattgattcctaaacagtcagttagggtcaaatgtctaatgttagaacatgtccttaaaacatgacaaatacctttttctgatat 558687  T
Q  329 gttatagcaaaaactcaaatcaagcaattgcaaattggggaaaatggaagcaatccttttgatgctttcatcttgtaaccatgt 412  Q
     ||||  ||| |  ||||||||||||||| |||||| ||||||| |||||||||| ||| ||   ||||||||| |||||||||    
T  558688 tttatgacaatagatcaaatcaagcaatttcaaattcgggaaaacggaagcaatcgtttggaccgtttcatcttttaaccatgt 558771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 80 - 378
Target Start/End: Complemental strand, 3438723 - 3438426
Alignment:
Q  80 cacatgcttcactcccatctctgtgacaacaatacaccattccagtaagagttgcaaaagcccacggcaacactttgagattacggagagtgtttcatca 179  Q
    ||||| |||||||||| || |||||||| |  ||||  |||||||||| ||||||||||||||||  |||| ||||||||||||   |||| ||| ||||    
T  3438723 cacatacttcactcccttcactgtgacacctttacaaaattccagtaacagttgcaaaagcccacaacaactctttgagattacatggagtattt-atca 3438625  T
Q  180 tcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcattcggcgcagcttccttcctaaacaactggttaagttcaaatgcg 279  Q
    |||||  |||||| ||||||| |||| || || | ||| | ||| | ||||||||||   | ||  |||  |||||||||||  | ||||||||||||      
T  3438624 tcaactcttgtatgtgacaagctcaatacctccaattttgaaacatcaaagttcattgcacacaaattcactcctaaacaaccagctaagttcaaatgtc 3438525  T
Q  280 taatctcggaacatgtccttaagacttggaaaataccttcttcagatgtgttatagcaaaaactcaaatcaagcaattgcaaattggggaaaatggaag 378  Q
    ||||||   ||||| ||||||| ||||| | || |||||| |||||| |||  | |||    |||| ||||||||  ||||||||||||||||| ||||    
T  3438524 taatcttacaacatctccttaaaacttgaataacaccttcgtcagatatgtagtcgcattctctcacatcaagcagctgcaaattggggaaaatagaag 3438426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 237
Target Start/End: Original strand, 532222 - 532287
Alignment:
Q  172 tttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcattc 237  Q
    ||||||||||||  ||||||||||||||||||||||| ||||| ||||| |||| |||||||||||    
T  532222 tttcatcatcaatgtttgtatatgacaagttcaacacctctagcttggggacttcaaagttcattc 532287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 237
Target Start/End: Complemental strand, 55505293 - 55505109
Alignment:
Q  51 gatctctcttagttgtgtgca-ctttctaccacatgcttcactcccatctctgtgacaacaatacaccattccagtaagagttgcaaaagcccacggcaa 149  Q
    |||||||||||||||||||||  |||||| ||| || ||||||||| ||||||||||| |  ||     || || ||| |  |||||||| ||||| |||    
T  55505293 gatctctcttagttgtgtgcagttttctaacacgtgtttcactcccttctctgtgacatcgcta---tttttcaataacaaatgcaaaagtccacgacaa 55505197  T
Q  150 cactttgagattacggagagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcattc 237  Q
      ||||||| | ||  | |||||| |||| ||||| ||||||||||||||||||||||| ||||||| ||| ||| ||||||||||||    
T  55505196 ttctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagttgggggactctaaagttcattc 55505109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 177 - 237
Target Start/End: Complemental strand, 1519203 - 1519143
Alignment:
Q  177 tcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcattc 237  Q
    ||||||||  |||||| ||||||||||||||| |||||||||||||||| |||||||||||    
T  1519203 tcatcaacccttgtatgtgacaagttcaacacctctagtttgggaacttcaaagttcattc 1519143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 659738 - 659795
Alignment:
Q  168 agtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaactt 225  Q
    |||||||||| || |||| |||||| ||||||||||||||| ||||||||||||||||    
T  659738 agtgtttcattattaacacttgtatgtgacaagttcaacacctctagtttgggaactt 659795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 1545802 - 1545870
Alignment:
Q  168 agtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcatt 236  Q
    |||||||||||||||||  ||||| |  ||||||||||||| || ||||| ||||||||||||||||||    
T  1545802 agtgtttcatcatcaactcttgtaaacaacaagttcaacacctccagtttaggaactttaaagttcatt 1545870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 167 - 237
Target Start/End: Complemental strand, 12116646 - 12116576
Alignment:
Q  167 gagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcattc 237  Q
    ||||| ||||||||||||| |||||| ||||||||||||||| ||||  || ||||| | |||||||||||    
T  12116646 gagtgattcatcatcaacacttgtatgtgacaagttcaacacctctaaatttggaacatcaaagttcattc 12116576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 36 - 107
Target Start/End: Complemental strand, 1534194 - 1534122
Alignment:
Q  36 acaatatttcaaatcgatctctcttagttgtgtgcactt-tctaccacatgcttcactcccatctctgtgaca 107  Q
    ||||||| ||||||||||||||  ||||||||  || || |||||||||||||| |||||| |||||||||||    
T  1534194 acaatatatcaaatcgatctcttgtagttgtgcacagttctctaccacatgcttaactcccttctctgtgaca 1534122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 310 - 401
Target Start/End: Original strand, 532354 - 532445
Alignment:
Q  310 aaataccttcttcagatgtgttatagcaaaaactcaaatcaagcaattgcaaattggggaaaatggaagcaatccttttgatgctttcatct 401  Q
    |||||||||||| |||| ||||||| ||| | ||||| || ||||  || ||||||||||||||||| |||| | || | ||||||||||||    
T  532354 aaataccttctttagatatgttataacaatagctcaagtccagcatatgtaaattggggaaaatggatgcaaacattataatgctttcatct 532445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 234
Target Start/End: Original strand, 570335 - 570446
Alignment:
Q  123 agtaagagttgcaaaagcccacggcaacactttgagattacggagagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaa 222  Q
    ||||| |||||||||||||| || |||| |||||| || |   |||||  ||| | ||||||   ||||||||||||||||||||| || |||||| |||    
T  570335 agtaacagttgcaaaagcccgcgacaactctttgaaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctcgagtttgagaa 570434  T
Q  223 ctttaaagttca 234  Q
    ||| ||||||||    
T  570435 cttcaaagttca 570446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 434 - 485
Target Start/End: Complemental strand, 1487082 - 1487031
Alignment:
Q  434 ctttaattgagtactaacaacaaaggaattagaattgtctgcactattattt 485  Q
    |||||||||||  || |||||||| ||||||||||||||| |||||||||||    
T  1487082 ctttaattgagggcttacaacaaatgaattagaattgtctacactattattt 1487031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 157
Target Start/End: Complemental strand, 7226079 - 7225964
Alignment:
Q  43 ttcaaatcgatctctcttagttgtgtgcacttt-ctaccacatgcttcactcccatctctgtgacaacaatacaccattccagtaagagttgcaaaagcc 141  Q
    ||||||| ||||||||| |||||  |||| ||| ||||||| ||||||| |||| |||| |||||  ||| ||| | ||||||||| ||||||||||| |    
T  7226079 ttcaaattgatctctctcagttgcttgcagttttctaccacgtgcttcaatcccttctcggtgacctcaaaacaactttccagtaatagttgcaaaagtc 7225980  T
Q  142 cacggcaacactttga 157  Q
    |||  |||| ||||||    
T  7225979 cacaacaactctttga 7225964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 237
Target Start/End: Complemental strand, 53761877 - 53761773
Alignment:
Q  131 ttgcaaaagcccacggcaacactttgagattacggagagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaag 230  Q
    ||||||||||||||| |||  ||| ||||| ||  ||||||||| ||| | ||| || ||| |||||||||||||| | ||||| |||||||||  ||||    
T  53761877 ttgcaaaagcccacgacaattcttcgagatcac--agagtgttttatcgttaactttcgtaaatgacaagttcaacgcctctagcttgggaactacaaag 53761780  T
Q  231 ttcattc 237  Q
    |||||||    
T  53761779 ttcattc 53761773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 335 - 381
Target Start/End: Original strand, 570727 - 570773
Alignment:
Q  335 gcaaaaactcaaatcaagcaattgcaaattggggaaaatggaagcaa 381  Q
    |||| |||| |||||||| | ||||||||||||||||||||||||||    
T  570727 gcaataacttaaatcaagtagttgcaaattggggaaaatggaagcaa 570773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 343 - 401
Target Start/End: Complemental strand, 1548321 - 1548263
Alignment:
Q  343 tcaaatcaagcaattgcaaattggggaaaatggaagcaatccttttgatgctttcatct 401  Q
    |||||||||||| |||||||||||||||||| |||| ||   |||||||| ||||||||    
T  1548321 tcaaatcaagcagttgcaaattggggaaaatcgaagaaaatattttgatggtttcatct 1548263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 569 - 602
Target Start/End: Original strand, 558919 - 558952
Alignment:
Q  569 gagggaggtgaggttagggaatctttggaagagt 602  Q
    ||||||||||||||||||||| ||||||||||||    
T  558919 gagggaggtgaggttagggaacctttggaagagt 558952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 237
Target Start/End: Original strand, 566182 - 566287
Alignment:
Q  132 tgcaaaagcccacggcaacactttgagattacggagagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagt 231  Q
    |||||||||||||| ||  |||||||||| ||  |||||||||||||||||||  ||| | |||| || | ||||  ||| |||||  |||||| |||||    
T  566182 tgcaaaagcccacgacagtactttgagatcacatagagtgtttcatcatcaacgcttgaacatgataaatccaacgtttcaagttttagaacttcaaagt 566281  T
Q  232 tcattc 237  Q
    ||||||    
T  566282 tcattc 566287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 107
Target Start/End: Original strand, 644734 - 644799
Alignment:
Q  43 ttcaaatcgatctctcttagttgtgtgca-ctttctaccacatgcttcactcccatctctgtgaca 107  Q
    ||||||||||||||||| |||||||||||  |||| |||||||| ||||||||  |||| ||||||    
T  644734 ttcaaatcgatctctctcagttgtgtgcatttttcaaccacatgtttcactcctttctccgtgaca 644799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 343 - 411
Target Start/End: Complemental strand, 21834276 - 21834208
Alignment:
Q  343 tcaaatcaagcaattgcaaattggggaaaatggaagcaatccttttgatgctttcatcttgtaaccatg 411  Q
    ||||||||||||  || |||||||||||||| ||||||| | || |||| |||||||| | ||||||||    
T  21834276 tcaaatcaagcagctgtaaattggggaaaattgaagcaaacattatgattctttcatcatttaaccatg 21834208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 105; Significance: 4e-52; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 61 - 444
Target Start/End: Complemental strand, 18315451 - 18315067
Alignment:
Q  61 agttgtgtgcacttt-ctaccacatgcttcactcccatctctgtgacaacaatacaccattccagtaagagttgcaaaagcccacggcaacactttgaga 159  Q
    ||||||||||| ||| ||||||||| |||  ||||  ||||||||||| ||  ||| | ||||| ||| ||||||||||||| ||| |||| ||||||||    
T  18315451 agttgtgtgcagttttctaccacatacttttctcctttctctgtgacatcacaacagcgttccaataacagttgcaaaagcctacgacaactctttgaga 18315352  T
Q  160 ttacggagagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcattcggcgcagcttccttcctaaaca 259  Q
    | ||  |||||| |||||||||||| ||||||| ||||||||||||||| || |||||||||||||||||||||||||  || |||||| ||| | ||      
T  18315351 tcacatagagtgcttcatcatcaacttttgtatgtgacaagttcaacacctccagtttgggaactttaaagttcattccacgtagcttcattcttgaatc 18315252  T
Q  260 actggttaagttcaaatgcgtaatctcggaacatgtccttaagacttggaaaataccttcttcagatgtgttatagcaaaaactcaaatcaagcaattgc 359  Q
    ||  | ||||||||| ||  ||||||| |||||  | | ||| |||||  ||||||||||||||| | |||||| |||  | |||||||||||||| |||    
T  18315251 acgagctaagttcaactgtctaatctcagaacaacttcgtaaaacttgacaaataccttcttcaggtatgttatcgcagtagctcaaatcaagcaactgc 18315152  T
Q  360 aaattggggaaaatggaagcaatccttttgatgctttcatcttgtaaccatgtactcgaaatcaaatgaagagactttaattgag 444  Q
    ||||||||||||||||||| ||   ||||||||||||| |||  |||||||| | |  || | ||| | ||||||||||||||||    
T  18315151 aaattggggaaaatggaagaaaatattttgatgctttcctctcttaaccatgaattgcaagtaaaacggagagactttaattgag 18315067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 80 - 392
Target Start/End: Original strand, 32151242 - 32151551
Alignment:
Q  80 cacatgcttcactcccatctctgtgacaacaatacaccattccagtaagagttgcaaaagcccacggcaacactttgagattacggagagtgtttcatca 179  Q
    |||||||||||| ||| |||||||||||    ||||  |  ||| ||| ||||||||||||||||  |||| ||||||||| ||  ||||||||||||||    
T  32151242 cacatgcttcacccccttctctgtgacatatttacaagacaccaataacagttgcaaaagcccactacaactctttgagatcacatagagtgtttcatca 32151341  T
Q  180 tcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcattcggcgcagcttccttcctaaacaactggttaagttcaaatgcg 279  Q
    ||||   ||||| |||||||||| ||||| || || |||| |||||  ||||||||||  |||||||||     |||||| | ||| || |||||||||     
T  32151342 tcaaaccttgtacatgacaagtttaacacctccagattggaaacttcgaagttcattccacgcagcttcacatgtaaacagccggtgaaattcaaatgcc 32151441  T
Q  280 taatctcggaacatgtccttaagacttggaaaataccttcttcagatgtgttatagcaaaaactcaaatcaagcaattgcaaattggggaaaatggaagc 379  Q
    ||||||| || |||   ||||| |||||  |||| |||||||||||| |||||| |||| | ||||||||||||| ||||||||| ||||||||||||||    
T  32151442 taatctcagagcat---cttaaaacttgacaaattccttcttcagatatgttatggcaacacctcaaatcaagcagttgcaaattagggaaaatggaagc 32151538  T
Q  380 aatccttttgatg 392  Q
    || | ||||||||    
T  32151539 aaacattttgatg 32151551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 73 - 236
Target Start/End: Original strand, 27922442 - 27922605
Alignment:
Q  73 tttctaccacatgcttcactcccatctctgtgacaacaatacaccattccagtaagagttgcaaaagcccacggcaacactttgagattacggagagtgt 172  Q
    ||||||||||||| ||||||||| ||| ||||| | || ||||   ||| ||| | | || |||||||||||  |||| ||||||||| |   | ||||     
T  27922442 tttctaccacatggttcactcccttctttgtgaaatcattacaattttcaagtgacaatttcaaaagcccacaacaactctttgagatcatataaagtgc 27922541  T
Q  173 ttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcatt 236  Q
    |||||||||||||||||||||||||||||||||||| || | ||||||||||| ||||||||||    
T  27922542 ttcatcatcaacatttgtatatgacaagttcaacacctccaatttgggaacttcaaagttcatt 27922605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 123 - 237
Target Start/End: Complemental strand, 34936278 - 34936164
Alignment:
Q  123 agtaagagttgcaaaagcccacggcaacactttgagattacggagagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaa 222  Q
    ||||| ||||||||||||||||| |||| ||||| |||  |  ||||||||| |||||||||  ||||||||||||||| |||||| |||||||| ||||    
T  34936278 agtaatagttgcaaaagcccacgacaactctttgcgatggcatagagtgttttatcatcaactcttgtatatgacaagtccaacacctctagttttggaa 34936179  T
Q  223 ctttaaagttcattc 237  Q
    | | |||| ||||||    
T  34936178 catcaaagatcattc 34936164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 345 - 400
Target Start/End: Complemental strand, 17627952 - 17627897
Alignment:
Q  345 aaatcaagcaattgcaaattggggaaaatggaagcaatccttttgatgctttcatc 400  Q
    |||||||||| |||||||||||||||||||||||||| | |||||||| |||||||    
T  17627952 aaatcaagcagttgcaaattggggaaaatggaagcaaacattttgatgttttcatc 17627897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 234
Target Start/End: Original strand, 21235607 - 21235653
Alignment:
Q  188 tgtatatgacaagttcaacacttctagtttgggaactttaaagttca 234  Q
    ||||||||||||||||||||| || ||||||||||||| ||||||||    
T  21235607 tgtatatgacaagttcaacacctccagtttgggaacttcaaagttca 21235653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 17636445 - 17636401
Alignment:
Q  194 tgacaagttcaacacttctagtttgggaactttaaagttcattcg 238  Q
    ||||||||||||||| || | ||||||||||| ||||||||||||    
T  17636445 tgacaagttcaacacctccaatttgggaacttcaaagttcattcg 17636401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 5e-27; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 52 - 237
Target Start/End: Complemental strand, 51113968 - 51113782
Alignment:
Q  52 atctctcttagttgtgtgcacttt-ctaccacatgcttcactcccatctctgtgacaacaatacaccattccagtaagagttgcaaaagcccacggcaac 150  Q
    ||||||||||||| |||||| ||| |||||||||||||||||||| |||||||||||     |||   || |||||| ||||||||||||||||  ||||    
T  51113968 atctctcttagttttgtgcatttttctaccacatgcttcactcccttctctgtgacatggtaacaatttttcagtaacagttgcaaaagcccacaacaac 51113869  T
Q  151 actttgagattacggagagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcattc 237  Q
     ||| ||||| ||  |||||||||||||||||||  |||||| ||||||||  ||||| || ||||||||| ||| |||||||||||    
T  51113868 tcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagtttgggagcttcaaagttcattc 51113782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 54 - 400
Target Start/End: Complemental strand, 13470917 - 13470573
Alignment:
Q  54 ctctcttagttgtgtgcactt-tctaccacatgcttcactcccatctctgtgacaacaatacaccattccagtaagagttgcaaaagcccacggcaacac 152  Q
    ||||||||| |||||||| || ||||||||||| |||||||||   |||||||||  |  |||   ||| ||||| ||||||||||||||||  |||  |    
T  13470917 ctctcttagctgtgtgcagttctctaccacatgtttcactccctcttctgtgacattatgacaaagttcaagtaatagttgcaaaagcccacaacaattc 13470818  T
Q  153 tttgagattacggagagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcattcggcgcagcttccttc 252  Q
    |||||||| |   ||||||||| ||||| ||| ||||||| ||||||||||||||| || || ||||||||   |||||||||||   | ||||||  |     
T  13470817 tttgagatcatatagagtgttttatcattaacctttgtatttgacaagttcaacacctccagattgggaacaacaaagttcattccaagtagcttcactt 13470718  T
Q  253 ctaaacaactggttaagttcaaatgcgtaatctcggaacatgtccttaagacttggaaaataccttcttcagatgtgttatagcaaaaactcaaatcaag 352  Q
     |  ||||  || ||||||||||||| ||||||   ||||| ||||||| |||||  ||||||||| |   |||  |  || |||| || ||||||||||    
T  13470717 ttttacaataggctaagttcaaatgcctaatcttacaacatatccttaaaacttgacaaatacctttt---gataagagattgcaacaattcaaatcaag 13470621  T
Q  353 caattgcaaattggggaaaatggaagcaatccttttgatgctttcatc 400  Q
    ||  ||||||||||||||| ||||||||| | || |||||| ||||||    
T  13470620 cagctgcaaattggggaaattggaagcaaacattatgatgccttcatc 13470573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 131 - 237
Target Start/End: Complemental strand, 51121000 - 51120894
Alignment:
Q  131 ttgcaaaagcccacggcaacactttgagattacggagagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaag 230  Q
    ||||||||||||||| |||| ||||||||||||  | ||| |||||||||||||  ||||||  |||||||||||||| || | |||| |||||| ||||    
T  51121000 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 51120901  T
Q  231 ttcattc 237  Q
    |||||||    
T  51120900 ttcattc 51120894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 119 - 413
Target Start/End: Complemental strand, 51764559 - 51764268
Alignment:
Q  119 ttccagtaagagttgcaaaagcccacggcaacactttgagattacggagagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttg 218  Q
    ||||||||| |||||||||||||| |  |||  |||||||||  |  ||||||||| ||||||||| |||||| |||||||||  ||||| || || ||     
T  51764559 ttccagtaatagttgcaaaagcccgcaacaattctttgagatcgcatagagtgttttatcatcaacttttgtaaatgacaagtctaacacctccagcttc 51764460  T
Q  219 ggaactttaaagttcattcggcgcagcttccttcctaaacaactggttaagttcaaatgcgtaatctcggaacatgtccttaagacttggaaaatacctt 318  Q
    ||||||  |||||||||||   | ||||||  || | ||||   || || |||||||||| ||||||  |||||| ||||||| ||||   | | |||||    
T  51764459 ggaactgcaaagttcattccaagtagcttcactcttgaacattcggataggttcaaatgcctaatcttagaacatctccttaaaacttcacagacacctt 51764360  T
Q  319 cttcagatgtgttatagcaaaaactcaaatcaagcaattgcaaattggggaaaatggaagcaatccttttgatgctttcatcttgtaaccatgta 413  Q
        |||| ||  || |||| || | ||||||||||  ||||||||||||||||||||||||| | || |||||||||||||   ||||||||||    
T  51764359 t---agatatgcgattgcaagaattaaaatcaagcagctgcaaattggggaaaatggaagcaaacattatgatgctttcatcacttaaccatgta 51764268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 160
Target Start/End: Complemental strand, 514921 - 514806
Alignment:
Q  46 aaatcgatctctcttagttgtgtgcactttct-accacatgcttcactcccatctctgtgacaacaatacaccattccagtaagagttgcaaaagcccac 144  Q
    |||| ||||||||| ||| ||||||| ||| | |||||||||||||||||| ||||||||| | |   |||   || |||||| ||||||||||||||||    
T  514921 aaattgatctctctcagtcgtgtgcagtttttcaccacatgcttcactcccgtctctgtgataccttcacaattttgcagtaatagttgcaaaagcccac 514822  T
Q  145 ggcaacactttgagat 160  Q
     ||||| ||| |||||    
T  514821 agcaactcttcgagat 514806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 357 - 411
Target Start/End: Complemental strand, 51113665 - 51113611
Alignment:
Q  357 tgcaaattggggaaaatggaagcaatccttttgatgctttcatcttgtaaccatg 411  Q
    |||| |||||||||||||||||||||| || ||||||| ||||||  ||||||||    
T  51113665 tgcagattggggaaaatggaagcaatcattatgatgctctcatctcttaaccatg 51113611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 3e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 119 - 381
Target Start/End: Complemental strand, 1037783 - 1037521
Alignment:
Q  119 ttccagtaagagttgcaaaagcccacggcaacactttgagattacggagagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttg 218  Q
    |||||| || ||||| ||||||||||  |||  ||||||||| |   ||||||||||||||||||||  ||||| ||||||||| ||||| |||| ||      
T  1037783 ttccagaaacagttgtaaaagcccacaacaattctttgagatcatatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctctaattca 1037684  T
Q  219 ggaactttaaagttcattcggcgcagcttccttcctaaacaactggttaagttcaaatgcgtaatctcggaacatgtccttaagacttggaaaatacctt 318  Q
    |||||||||||||| ||||   | || |||  || | || |   || ||| ||||||||  ||| ||   ||||| ||||||| ||||   |||||||||    
T  1037683 ggaactttaaagtttattctaagtagtttcactcttgaatagtaggctaaattcaaatgtctaaccttacaacatctccttaaaacttcacaaatacctt 1037584  T
Q  319 cttcagatgtgttatagcaaaaactcaaatcaagcaattgcaaattggggaaaatggaagcaa 381  Q
    |||||||| |||||| |||  | ||||||||||| ||||||||||||||||||||||||||||    
T  1037583 cttcagatatgttatggcaggagctcaaatcaagaaattgcaaattggggaaaatggaagcaa 1037521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 44 - 237
Target Start/End: Complemental strand, 45245280 - 45245086
Alignment:
Q  44 tcaaatcgatctctcttagttgtgtgcacttt-ctaccacatgcttcactcccatctctgtgacaacaatacaccattccagtaagagttgcaaaagccc 142  Q
    |||||| ||||||| | ||||||||||| ||| |||||||||| ||||||||| | |||||||||  |  |||   || || ||| ||||||||||||||    
T  45245280 tcaaattgatctctgtaagttgtgtgcaattttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagccc 45245181  T
Q  143 acggcaacactttgagattacggagagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcattc 237  Q
    ||| |||| ||||||||| ||   ||||||||||||||||||  |||| | |||||| |||||||| || ||||| ||||||| |||||| ||||    
T  45245180 acgacaactctttgagatcacatggagtgtttcatcatcaaccattgtctctgacaaattcaacacctcaagttttggaacttcaaagtttattc 45245086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 168 - 401
Target Start/End: Complemental strand, 32785842 - 32785612
Alignment:
Q  168 agtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcattcggcgcagcttccttcctaaacaactggt-t 266  Q
    |||| |||||||||||   |||||| ||||||||||||||| |||||||||||| |||||||||||||||| ||  |||   ||| | || || ||||      
T  32785842 agtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagctttaaagttcattcgacggtgctcgattcttgaa-aagtggtcc 32785744  T
Q  267 aagttcaaatgcgtaatctcggaacatgtccttaagacttggaaaataccttcttcagatgtgttatagcaaaaactcaaatcaagcaattgcaaattgg 366  Q
    || ||||||||  ||||||  ||||||   ||||| | |||  ||||||||||||||||| ||||||||||| | ||||||||||| | |||||||||||    
T  32785743 aaattcaaatgtctaatcttagaacat---cttaaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaagtagttgcaaattgg 32785647  T
Q  367 ggaaaatggaagcaatccttttgatgctttcatct 401  Q
      ||||| |||| || | |  ||||||||||||||    
T  32785646 aaaaaatagaagaaaacatcctgatgctttcatct 32785612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 332 - 378
Target Start/End: Complemental strand, 44575505 - 44575459
Alignment:
Q  332 atagcaaaaactcaaatcaagcaattgcaaattggggaaaatggaag 378  Q
    ||||||||| ||||||||||| |||||||||||||| ||||||||||    
T  44575505 atagcaaaagctcaaatcaagtaattgcaaattgggaaaaatggaag 44575459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 4e-21; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 54 - 237
Target Start/End: Original strand, 6415880 - 6416064
Alignment:
Q  54 ctctcttagttgtgtgcactt-tctaccacatgcttcactcccatctctgtgacaacaatacaccattccagtaagagttgcaaaagcccacggcaacac 152  Q
    |||||||||||||||||| || ||||||||||| ||||||||||  |||||||||  |  |||  |||| ||||| |||||||||||||| |  |||  |    
T  6415880 ctctcttagttgtgtgcagttctctaccacatgtttcactcccacttctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattc 6415979  T
Q  153 tttgagattacggagagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcattc 237  Q
    |||||||| ||  |||| |||| ||||| ||| ||||||| ||||||||||||||| || || |||||||||  ||||| |||||    
T  6415980 tttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagtccattc 6416064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 129 - 319
Target Start/End: Original strand, 6402850 - 6403040
Alignment:
Q  129 agttgcaaaagcccacggcaacactttgagattacggagagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaa 228  Q
    |||| |||||||||||  |||  ||||||||| ||  ||||||||||||||||||| || |||| ||||||||||||||||||||||| |||||||  ||    
T  6402850 agtttcaaaagcccactacaattctttgagatcacatagagtgtttcatcatcaaccttcgtatctgacaagttcaacacttctagttggggaactgcaa 6402949  T
Q  229 agttcattcggcgcagcttccttcctaaacaactggttaagttcaaatgcgtaatctcggaacatgtccttaagacttggaaaataccttc 319  Q
    |||| ||||   | ||||||  || | |||| |  ||||||||||||||| |||| |   ||||| ||||||| |||||  ||||||||||    
T  6402950 agtttattccaagtagcttcactcttgaacacccagttaagttcaaatgcctaatgttacaacatctccttaaaacttgacaaataccttc 6403040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 205
Target Start/End: Complemental strand, 6585415 - 6585270
Alignment:
Q  61 agttgtgtgcac-tttctaccacatgcttcactcccatctctgtgacaacaatacaccattccagtaagagttgcaaaagcccacggcaacactttgaga 159  Q
    |||||||||||  ||||||||||||| |||| |||| |||||||||||     ||| | || |||||| |||| ||||||| ||   |||| ||||||||    
T  6585415 agttgtgtgcaaatttctaccacatgtttcagtcccttctctgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttgaga 6585316  T
Q  160 ttacggagagtgtttcatcatcaacatttgtatatgacaagttcaa 205  Q
    | ||  ||||||||||||||||||| ||||||| ||||||||||||    
T  6585315 tcacatagagtgtttcatcatcaacctttgtatctgacaagttcaa 6585270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 73 - 237
Target Start/End: Original strand, 19632373 - 19632537
Alignment:
Q  73 tttctaccacatgcttcactcccatctctgtgacaacaatacaccattccagtaagagttgcaaaagcccacggcaacactttgagattacggagagtgt 172  Q
    |||||||||| || ||||||||| ||||||||| |  |  |||   || |||||||||||||||||||||||  |||  ||||||||| ||  | |||      
T  19632373 tttctaccacgtgtttcactcccttctctgtgatattagcacaatttttcagtaagagttgcaaaagcccacaacaattctttgagatcacaaaaagttg 19632472  T
Q  173 ttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcattc 237  Q
     ||||||||||| |||||||| ||||||| |||||| ||||| |||||||||  |||||| ||||    
T  19632473 ctcatcatcaacctttgtatacgacaagtccaacacctctagcttgggaactagaaagtttattc 19632537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 342 - 401
Target Start/End: Original strand, 9411555 - 9411614
Alignment:
Q  342 ctcaaatcaagcaattgcaaattggggaaaatggaagcaatccttttgatgctttcatct 401  Q
    |||||||||||||  ||||||||||||||||||||||||| |||||||||| ||| ||||    
T  9411555 ctcaaatcaagcagctgcaaattggggaaaatggaagcaaaccttttgatgtttttatct 9411614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 237
Target Start/End: Original strand, 6394856 - 6394962
Alignment:
Q  131 ttgcaaaagcccacggcaacactttgagattacggagagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaag 230  Q
    ||||||||||||||  |||  ||||||||| || || || ||||||||||||||  |||||| ||||||||||||||| || || | |||||||  ||||    
T  6394856 ttgcaaaagcccacaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaag 6394955  T
Q  231 ttcattc 237  Q
    |||||||    
T  6394956 ttcattc 6394962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 379
Target Start/End: Original strand, 7119185 - 7119394
Alignment:
Q  167 gagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcattcggcgcagcttccttcctaaacaactggtt 266  Q
    |||||||||||||||||| || |||| ||||||||||||||| || || | | ||||   |||||||||||   | ||||||  || | ||||   || |    
T  7119185 gagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggtgaacaacaaagttcattccaagtagcttcactcttgaacagtgggct 7119284  T
Q  267 aagttcaaatgcgtaatctcggaacatgtccttaagacttggaaaataccttcttcagatgtgttatagcaaaaactcaaatcaagcaattgcaaattgg 366  Q
    |||||||||||  ||||||  |||||| ||||||| |||||  ||||||||||   |||| |||||| ||||  | |||||||||| | ||| |||||||    
T  7119285 aagttcaaatgtttaatcttagaacatctccttaaaacttgacaaataccttc---agatatgttattgcaagtattcaaatcaagaagttgtaaattgg 7119381  T
Q  367 ggaaaatggaagc 379  Q
    |||||| ||||||    
T  7119382 ggaaaaaggaagc 7119394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 379
Target Start/End: Original strand, 7131663 - 7131872
Alignment:
Q  167 gagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcattcggcgcagcttccttcctaaacaactggtt 266  Q
    |||||||||||||||||| || |||| ||||||||||||||| || || | | ||||   |||||||||||   | ||||||  || | ||||   || |    
T  7131663 gagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggcgaacaacaaagttcattccaagtagcttcactcttgaacagtgggct 7131762  T
Q  267 aagttcaaatgcgtaatctcggaacatgtccttaagacttggaaaataccttcttcagatgtgttatagcaaaaactcaaatcaagcaattgcaaattgg 366  Q
    |||||||||||  ||||||  |||||| ||||||| |||||  ||||||||||   |||| |||||| ||||  | |||||||||| | ||| |||||||    
T  7131763 aagttcaaatgtttaatcttagaacatctccttaaaacttgacaaataccttc---agatatgttattgcaagtattcaaatcaagaagttgtaaattgg 7131859  T
Q  367 ggaaaatggaagc 379  Q
    |||||| ||||||    
T  7131860 ggaaaaaggaagc 7131872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 234
Target Start/End: Original strand, 9411292 - 9411450
Alignment:
Q  76 ctaccacatgcttcactcccatctctgtgacaacaatacaccattccagtaagagttgcaaaagcccacggcaacactttgagattacggagagtgtttc 175  Q
    ||||||||||| |||||||| | ||| |||||  |  ||| |||| |||||| ||||||||||| ||||| |||  |||||||||  |  ||||| ||||    
T  9411292 ctaccacatgcatcactcccttatctctgacattatgacagcattgcagtaacagttgcaaaagtccacgacaattctttgagatctcatagagtatttc 9411391  T
Q  176 atcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttca 234  Q
    |||   ||||  ||||||||||||||||||||| || || |||||||| | ||||||||    
T  9411392 atcgaaaacacctgtatatgacaagttcaacacctccagcttgggaacctcaaagttca 9411450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 14802363 - 14802429
Alignment:
Q  166 agagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagtt 232  Q
    ||||||||||||||||||| ||||||| |||||| ||||||||||| |  |||||||||| ||||||    
T  14802363 agagtgtttcatcatcaacctttgtatttgacaaattcaacacttccatcttgggaacttcaaagtt 14802429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 168 - 237
Target Start/End: Original strand, 6432190 - 6432259
Alignment:
Q  168 agtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcattc 237  Q
    |||||||||||||||||  |||||| ||||||||||||||| |  || |||||||||| |||||||||||    
T  6432190 agtgtttcatcatcaacgcttgtatttgacaagttcaacaccttcagcttgggaacttcaaagttcattc 6432259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 402
Target Start/End: Complemental strand, 6594676 - 6594445
Alignment:
Q  168 agtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcattcggcgcagcttccttcctaaacaactggtta 267  Q
    ||||| ||||||||||| | ||||| |||||||| |||||| || ||||||||||||  |||||| ||||   | ||||||  || | |||| | || ||    
T  6594676 agtgtctcatcatcaacctctgtatttgacaagtacaacacctccagtttgggaactaaaaagtttattccatgtagcttcactcttgaacacccggata 6594577  T
Q  268 agttcaaatgcgtaatctcggaacatgtccttaagacttggaaaataccttcttcagatgtgttatagcaaaaactcaaatcaagcaattgcaaattggg 367  Q
    ||| |||||| |||||||   ||||| ||||||| |||||  ||||||   |||||||| | | || | |||| |||||||||||||  | |||| ||||    
T  6594576 agtacaaatgtgtaatcttataacatctccttaaaacttgacaaatac---cttcagatatttgatcggaaaacctcaaatcaagcagctccaaagtggg 6594480  T
Q  368 gaaaatggaagcaatccttttgatgctttcatctt 402  Q
    |||||| ||||||| |  | ||||| |||||||||    
T  6594479 gaaaatagaagcaaacaatatgatgttttcatctt 6594445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 208
Target Start/End: Complemental strand, 6597014 - 6596958
Alignment:
Q  152 ctttgagattacggagagtgtttcatcatcaacatttgtatatgacaagttcaacac 208  Q
    |||||||||  || ||||||||||||||||||||||||||  |||||||||||||||    
T  6597014 ctttgagatagcgtagagtgtttcatcatcaacatttgtacttgacaagttcaacac 6596958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 234
Target Start/End: Complemental strand, 11936471 - 11936279
Alignment:
Q  43 ttcaaatcgatctctcttagttgtgtgcacttt-ctaccacatgcttcactcccatctctgtgacaacaatacaccattccagtaagagttgcaaaagcc 141  Q
    |||||||||| |||||| | ||||||||| ||| | ||||||||| |||||||  | ||||||||| |   |||  |||  ||| | |||||||||||||    
T  11936471 ttcaaatcgacctctctcatttgtgtgcatttttcaaccacatgcgtcactcctttgtctgtgacaccttcacaaaatttaagtgacagttgcaaaagcc 11936372  T
Q  142 cacggcaacactttgagattacggagagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttca 234  Q
    |||  |||| |||||||||     |||||| || ||| |||||  ||||| ||||||||| |||||| || ||||||||||||| ||||||||    
T  11936371 cactacaactctttgagatccaatagagtgatttatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttca 11936279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 234
Target Start/End: Complemental strand, 11948451 - 11948259
Alignment:
Q  43 ttcaaatcgatctctcttagttgtgtgcacttt-ctaccacatgcttcactcccatctctgtgacaacaatacaccattccagtaagagttgcaaaagcc 141  Q
    |||||||||| |||||| | ||||||||| ||| | ||||||||| |||||||  | ||||||||| |   |||  |||  ||| | |||||||||||||    
T  11948451 ttcaaatcgacctctctcatttgtgtgcatttttcaaccacatgcgtcactcctttgtctgtgacaccttcacaaaatttaagtgacagttgcaaaagcc 11948352  T
Q  142 cacggcaacactttgagattacggagagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttca 234  Q
    |||  |||| |||||||||     |||||| || ||| |||||  ||||| ||||||||| |||||| || ||||||||||||| ||||||||    
T  11948351 cactacaactctttgagatccaatagagtgatttatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttca 11948259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 73 - 236
Target Start/End: Complemental strand, 6603367 - 6603204
Alignment:
Q  73 tttctaccacatgcttcactcccatctctgtgacaacaatacaccattccagtaagagttgcaaaagcccacggcaacactttgagattacggagagtgt 172  Q
    ||||||||||||| ||||||||  |||||||||||  |  |||  ||| || ||| |||| |||||||||| | |||| |||||||||  |  ||| |||    
T  6603367 tttctaccacatgtttcactcctttctctgtgacataataacaatatttcaataatagttccaaaagcccaggacaactctttgagatcgcatagactgt 6603268  T
Q  173 ttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcatt 236  Q
    |||||||||||||  ||||| || ||||| |||||| | ||| ||||||| |  ||||||||||    
T  6603267 ttcatcatcaacacctgtatctgccaagtccaacacctgtagcttgggaagtacaaagttcatt 6603204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 24 - 94
Target Start/End: Original strand, 28934933 - 28935004
Alignment:
Q  24 atgcacttgaagacaatatttcaaatcgatctctcttagttgtgtgc-actttctaccacatgcttcactcc 94  Q
    |||||||| || |||||  | ||||| |||||||||||||||||||| | ||||||||||||||||||||||    
T  28934933 atgcactttaacacaatcatccaaatagatctctcttagttgtgtgcaattttctaccacatgcttcactcc 28935004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 208
Target Start/End: Complemental strand, 10579808 - 10579766
Alignment:
Q  166 agagtgtttcatcatcaacatttgtatatgacaagttcaacac 208  Q
    ||||||||| ||||||||| |||||||||||||||||||||||    
T  10579808 agagtgttttatcatcaacttttgtatatgacaagttcaacac 10579766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 52 - 237
Target Start/End: Original strand, 14820605 - 14820791
Alignment:
Q  52 atctctcttagttgtgtgcactttct-accacatgcttcactcccatctctgtgacaacaatacaccattccagtaagagttgcaaaagcccacggcaac 150  Q
    |||||||| || |||||||| ||| | |||||||| ||||| ||| ||||||||||| || ||||   ||| ||||| | | ||||||||||||  |||     
T  14820605 atctctctcagctgtgtgcagttttttaccacatgtttcacacccttctctgtgacatcattacatttttcaagtaataatcgcaaaagcccacaacaat 14820704  T
Q  151 actttgagattacggagagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcattc 237  Q
     ||| ||||| |   | |||||||||| |||||| ||||||| ||| ||||||||||| ||||  |||||||||  |||||| ||||    
T  14820705 tcttggagatcatataaagtgtttcattatcaacctttgtatttgataagttcaacacctctaacttgggaactgcaaagttaattc 14820791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 236
Target Start/End: Original strand, 6423201 - 6423314
Alignment:
Q  123 agtaagagttgcaaaagcccacggcaacactttgagattacggagagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaa 222  Q
    ||||| |||||||||| |||||  |||| |||||||||  |  ||||||||| |||   |||  |||||| ||||||||||||||| || || |||||||    
T  6423201 agtaatagttgcaaaatcccacaacaactctttgagatcgcatagagtgttttatcgctaactcttgtatttgacaagttcaacacctccagcttgggaa 6423300  T
Q  223 ctttaaagttcatt 236  Q
    ||| ||||||||||    
T  6423301 cttaaaagttcatt 6423314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 6589393 - 6589324
Alignment:
Q  168 agtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcattc 237  Q
    ||||||| ||||| ||||||||||| ||||||||||||||| || ||  ||||||||  |||||||||||    
T  6589393 agtgttttatcattaacatttgtatttgacaagttcaacacctccagcatgggaactacaaagttcattc 6589324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 129 - 237
Target Start/End: Original strand, 6409996 - 6410104
Alignment:
Q  129 agttgcaaaagcccacggcaacactttgagattacggagagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaa 228  Q
    ||||||||||||| ||  |||  ||||||||| ||  | || ||||||||||||||  |||||| |||| |||||||||| |  || |||||||||| ||    
T  6409996 agttgcaaaagccgacaacaattctttgagatcacataaagagtttcatcatcaacgcttgtatttgactagttcaacaccttcagcttgggaacttcaa 6410095  T
Q  229 agttcattc 237  Q
    |||||||||    
T  6410096 agttcattc 6410104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 73 - 237
Target Start/End: Complemental strand, 7994347 - 7994183
Alignment:
Q  73 tttctaccacatgcttcactcccatctctgtgacaacaatacaccattccagtaagagttgcaaaagcccacggcaacactttgagattacggagagtgt 172  Q
    ||||||||||||| |||||||||  ||| || ||| || ||||   ||| ||||| ||||||||||| |||   |||  ||||||||| ||  | |||||    
T  7994347 tttctaccacatgtttcactccctcctcggtaacatcattacaaagttcaagtaatagttgcaaaagtccagaacaattctttgagatcacatatagtgt 7994248  T
Q  173 ttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcattc 237  Q
    ||| |||| |||  |||||| ||||| ||||||||| ||||| || ||||||  |||||||||||    
T  7994247 ttcgtcattaacccttgtatttgacatgttcaacacctctagcttcggaactacaaagttcattc 7994183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 188 - 234
Target Start/End: Original strand, 12102315 - 12102361
Alignment:
Q  188 tgtatatgacaagttcaacacttctagtttgggaactttaaagttca 234  Q
    ||||| ||||||||||||||| || ||||||||||||| ||||||||    
T  12102315 tgtatgtgacaagttcaacacctccagtttgggaacttcaaagttca 12102361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 7e-20; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 73 - 231
Target Start/End: Complemental strand, 41901700 - 41901542
Alignment:
Q  73 tttctaccacatgcttcactcccatctctgtgacaacaatacaccattccagtaagagttgcaaaagcccacggcaacactttgagattacggagagtgt 172  Q
    ||||||||||||||||||||||| ||| ||||||| || ||||   ||  ||| | | || |||||| ||||  |||| ||||||||| |   | ||||     
T  41901700 tttctaccacatgcttcactcccttctttgtgacatcattacaatcttgaagtgacaatttcaaaagtccacaacaactctttgagatcatataaagtgc 41901601  T
Q  173 ttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagt 231  Q
    |||||||||||| ||||||||||||||||||||||| || ||||||||||||| |||||    
T  41901600 ttcatcatcaacttttgtatatgacaagttcaacacctccagtttgggaacttcaaagt 41901542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 168 - 236
Target Start/End: Complemental strand, 41889624 - 41889556
Alignment:
Q  168 agtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcatt 236  Q
    ||||||||||||||||| ||||||||||| ||||||||||| || | ||||||||||||||||||||||    
T  41889624 agtgtttcatcatcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcatt 41889556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 45 - 232
Target Start/End: Complemental strand, 38267750 - 38267562
Alignment:
Q  45 caaatcgatctctcttagttgtgtgcactttct-accacatgcttcactcccatctctgtgacaacaatacaccattccagtaagagttgcaaaagccca 143  Q
    ||||| ||||||||| |||| |||||| ||| | ||||||||| |||||||| |||| ||||||    ||||   || |||  | |||| ||||||||||    
T  38267750 caaattgatctctctgagttttgtgcagtttttgaccacatgcatcactcccttctcggtgacattcgtacaaagttgcagcgacagtttcaaaagccca 38267651  T
Q  144 cggcaacactttgagattacggagagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagtt 232  Q
    |||||   ||||||||||||  ||||||| |||||||||||  |||||| || ||||| |||||| || || |||||||||| ||||||    
T  38267650 cggcacgtctttgagattacatagagtgtgtcatcatcaactcttgtatgtgtcaagtccaacacctcaaggttgggaacttcaaagtt 38267562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 131 - 208
Target Start/End: Complemental strand, 20478189 - 20478112
Alignment:
Q  131 ttgcaaaagcccacggcaacactttgagattacggagagtgtttcatcatcaacatttgtatatgacaagttcaacac 208  Q
    ||||||||||||||  |||  | ||||||| || || | |||||| ||||||||||||||||||||||||||||||||    
T  20478189 ttgcaaaagcccacaacaattccttgagatcacagataatgtttcgtcatcaacatttgtatatgacaagttcaacac 20478112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 128 - 231
Target Start/End: Original strand, 37937876 - 37937979
Alignment:
Q  128 gagttgcaaaagcccacggcaacactttgagattacggagagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaacttta 227  Q
    |||||||||||||||||| ||   ||||||||||||  ||||||||| ||||||||   |||||| || ||||| |||||| || || |||||||||| |    
T  37937876 gagttgcaaaagcccacgacacatctttgagattacatagagtgtttgatcatcaattcttgtatgtgtcaagtccaacacctcaaggttgggaacttca 37937975  T
Q  228 aagt 231  Q
    ||||    
T  37937976 aagt 37937979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 236
Target Start/End: Original strand, 32267409 - 32267572
Alignment:
Q  73 tttctaccacatgcttcactcccatctctgtgacaacaatacaccattccagtaagagttgcaaaagcccacggcaacactttgagattacggagagtgt 172  Q
    ||||||| ||||||||||||||| ||| ||||| | || ||||   ||  ||| | | || |||||||||||  |||| ||||||||| |   | ||||     
T  32267409 tttctactacatgcttcactcccttctttgtgatatcattacaatttttaagtgacaatttcaaaagcccacaacaactctttgagatcatataaagtgc 32267508  T
Q  173 ttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcatt 236  Q
    ||||||||||||  |||| | |||||||||||| || || | ||||||||||| ||||||||||    
T  32267509 ttcatcatcaactattgtttgtgacaagttcaatacctccaatttgggaacttcaaagttcatt 32267572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 343 - 381
Target Start/End: Original strand, 37938092 - 37938130
Alignment:
Q  343 tcaaatcaagcaattgcaaattggggaaaatggaagcaa 381  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  37938092 tcaaatcaagaaattgcagattggggaaaatggaagcaa 37938130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 379
Target Start/End: Complemental strand, 41901434 - 41901397
Alignment:
Q  342 ctcaaatcaagcaattgcaaattggggaaaatggaagc 379  Q
    |||||||||||||  |||||||||||||||||||||||    
T  41901434 ctcaaatcaagcagctgcaaattggggaaaatggaagc 41901397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 73 - 205
Target Start/End: Original strand, 7554422 - 7554554
Alignment:
Q  73 tttctaccacatgcttcactcccatctctgtgacaacaatacaccattccagtaagagttgcaaaagcccacggcaacactttgagattacggagagtgt 172  Q
    ||||||||||||||||||||||| | |||||||||  |  ||| | || |||||| ||||| ||||| ||||  |||| ||||||||| |   ||||||     
T  7554422 tttctaccacatgcttcactcccttttctgtgacattatcacatcctttcagtaacagttgtaaaagtccaccacaactctttgagatcatatagagtgc 7554521  T
Q  173 ttcatcatcaacatttgtatatgacaagttcaa 205  Q
    ||||||||||||| |||||||||| ||||||||    
T  7554522 ttcatcatcaacacttgtatatgataagttcaa 7554554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 9586668 - 9586725
Alignment:
Q  168 agtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaactt 225  Q
    ||||||||||||| ||||| ||||||||||||||||||||| ||||| ||||| ||||    
T  9586668 agtgtttcatcattaacatctgtatatgacaagttcaacacctctagcttggggactt 9586725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 234
Target Start/End: Complemental strand, 19468569 - 19468503
Alignment:
Q  168 agtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttca 234  Q
    ||||||||||||||||| ||||||| |||||| |||||||| || || |||||||||  ||||||||    
T  19468569 agtgtttcatcatcaacctttgtatctgacaacttcaacacctccagcttgggaactacaaagttca 19468503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 170 - 236
Target Start/End: Original strand, 52082612 - 52082678
Alignment:
Q  170 tgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcatt 236  Q
    ||||||||||||||  ||||| | ||||||||||||||| || | ||||| ||||| ||||||||||    
T  52082612 tgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 52082678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 400
Target Start/End: Complemental strand, 19468397 - 19468340
Alignment:
Q  343 tcaaatcaagcaattgcaaattggggaaaatggaagcaatccttttgatgctttcatc 400  Q
    ||||||||||||  ||||||||||| ||||||||||||| | || ||||| |||||||    
T  19468397 tcaaatcaagcagctgcaaattgggaaaaatggaagcaaacattatgatgttttcatc 19468340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 237
Target Start/End: Original strand, 43634936 - 43635005
Alignment:
Q  168 agtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcattc 237  Q
    |||||| |||| ||||| ||||||||||||||||||||| | ||||| | ||| ||| ||||| ||||||    
T  43634936 agtgttccatcgtcaacctttgtatatgacaagttcaacgcctctagctgggggactctaaaggtcattc 43635005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 237
Target Start/End: Complemental strand, 15092338 - 15092152
Alignment:
Q  52 atctctcttagttgtgtgcacttt-ctaccacatgcttcactcccatctctgtgacaacaatacaccattccagtaagagttgcaaaagcccacggcaac 150  Q
    |||||||| | ||||||||| ||| ||| |||||| ||||||||||  |||||||||  |  |||  |||| ||||| ||||||||||||||||  |||     
T  15092338 atctctctcaattgtgtgcagttttctagcacatgtttcactcccacttctgtgacattataacaaaattcaagtaatagttgcaaaagcccacaacaat 15092239  T
Q  151 actttgagattacggagagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcattc 237  Q
     |||||||||  |  ||||||||| ||||| ||| ||||| | |||||| |||||||| || || | |||||||  |||||||||||    
T  15092238 tctttgagatcgcatagagtgttttatcattaacctttgtttctgacaaattcaacacctccagctcgggaactgcaaagttcattc 15092152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 343 - 381
Target Start/End: Original strand, 10614794 - 10614832
Alignment:
Q  343 tcaaatcaagcaattgcaaattggggaaaatggaagcaa 381  Q
    |||||||||||| |||||||||||||||| |||||||||    
T  10614794 tcaaatcaagcagttgcaaattggggaaattggaagcaa 10614832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 123 - 223
Target Start/End: Original strand, 10614577 - 10614677
Alignment:
Q  123 agtaagagttgcaaaagcccacggcaacactttgagattacggagagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaa 222  Q
    ||||| ||||||||||||||||  ||   ||| ||||| ||  ||||||||| ||||| ||| || |||| ||||||||||||||| || || |||||||    
T  10614577 agtaatagttgcaaaagcccactacagttcttcgagatcacatagagtgttttatcattaaccttcgtatttgacaagttcaacacctccagattgggaa 10614676  T
Q  223 c 223  Q
    |    
T  10614677 c 10614677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 166 - 237
Target Start/End: Complemental strand, 696 - 625
Alignment:
Q  166 agagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcattc 237  Q
    |||||||||||||||| ||| |||||| ||||||||| ||||| |||| ||  |||||||||||||| ||||    
T  696 agagtgtttcatcatcgacacttgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattc 625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 367
Target Start/End: Complemental strand, 552 - 495
Alignment:
Q  310 aaataccttcttcagatgtgttatagcaaaaactcaaatcaagcaattgcaaattggg 367  Q
    ||||||||||||||||| |||||| |||  | ||||||||||| ||||| ||||||||    
T  552 aaataccttcttcagatatgttatggcaggagctcaaatcaagaaattgtaaattggg 495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0807 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 236
Target Start/End: Complemental strand, 1528 - 1466
Alignment:
Q  174 tcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaactttaaagttcatt 236  Q
    ||||||||||||||||||| |||||||| |||||| ||||| || ||||||  ||||||||||    
T  1528 tcatcatcaacatttgtatttgacaagtccaacacctctagcttaggaactacaaagttcatt 1466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 208
Target Start/End: Original strand, 39164 - 39253
Alignment:
Q  119 ttccagtaagagttgcaaaagcccacggcaacactttgagattacggagagtgtttcatcatcaacatttgtatatgacaagttcaacac 208  Q
    ||||||||  || |||||||||||||  |||| ||||||||| ||  | ||||||||||||| ||| |||||| ||| ||||||||||||    
T  39164 ttccagtatcaggtgcaaaagcccactacaactctttgagatcacataaagtgtttcatcattaacctttgtaaatgtcaagttcaacac 39253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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