View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6966_low_3 (Length: 502)
Name: NF6966_low_3
Description: NF6966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6966_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 16 - 408
Target Start/End: Complemental strand, 43527538 - 43527146
Alignment:
| Q |
16 |
cacatcatattaattgatagcagaaactcaactatat------ttgttagctttgcaccaaccattccatcattcatactagcaacaatttcatagtcaa |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
43527538 |
cacatcatattaattgatagcagaaactcaactatatatatatttgttagctttgcaccaaccattccatcattcatacta-caacaatttcatagtcaa |
43527440 |
T |
|
| Q |
110 |
catcttatt----ggcattttacgagcatgcatgcatggacttatc--agtcaccagtcacaaatccacaactaataatactttcttggatactaaagct |
203 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
43527439 |
catcttattaattggcattttacgagcatgcatgcatggacttatcgcagtcaccagtcacaaatccacaactaataatactttcttgaatcctaaagct |
43527340 |
T |
|
| Q |
204 |
aacatgtaagttaaaaacaatagaacgctaactttagaatttctatgcggccaatgaaatcgggtttagggataaatattttcgtatcagaagtgttgga |
303 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
43527339 |
aacatgtaagttaaaaacaatagaatgctaactttagaatttctatgcggccaatgaaatcgggttta---------------gtatcagaagtgttgga |
43527255 |
T |
|
| Q |
304 |
tccaga----atgtctggtcgatttgtggaggcaatataatggtgatcatctaccccggccctttacttcaaatccatctaagcattcggcaaacaggaa |
399 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43527254 |
tccagaatgtatgtctggtcgatttgtggaggcaatataatggtgatcatctaccccggccctttacttcaaatccatctaagcattcggcaaacaggaa |
43527155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 28 - 135
Target Start/End: Complemental strand, 43542835 - 43542722
Alignment:
| Q |
28 |
attgatagcagaaac-tcaactatatttgttagctttgcaccaaccattccatcattcatactagcaacaatttcatagtcaacatctt-----attggc |
121 |
Q |
| |
|
||||||||||| ||| |||||||| || | ||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
43542835 |
attgatagcagcaacctcaactatgttagctagctctgcaccaaccattccatcagtcatactagcaacaatttcatagtctacatcttcagcaattggc |
43542736 |
T |
|
| Q |
122 |
attttacgagcatg |
135 |
Q |
| |
|
||||||||||||| |
|
|
| T |
43542735 |
tttttacgagcatg |
43542722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 294 - 336
Target Start/End: Complemental strand, 43542482 - 43542440
Alignment:
| Q |
294 |
aagtgttggatccagaatgtctggtcgatttgtggaggcaata |
336 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43542482 |
aagtgctggatccagaatgtctggtcgatttgtggaggcaata |
43542440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 279
Target Start/End: Complemental strand, 43542569 - 43542513
Alignment:
| Q |
223 |
atagaacgctaactttagaatttctatgcggccaatgaaatcgggtttagggataaa |
279 |
Q |
| |
|
|||||| |||| |||||||||||| ||||||||||||||| ||||||| |||||||| |
|
|
| T |
43542569 |
atagaatgctacctttagaatttcaatgcggccaatgaaaccgggtttggggataaa |
43542513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 462 - 495
Target Start/End: Complemental strand, 43527092 - 43527059
Alignment:
| Q |
462 |
gtcaagtgttgctttatgttcatgatgtccatct |
495 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |
|
|
| T |
43527092 |
gtcaagtgttgctttatgttcatgttgtccatct |
43527059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University