View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6966_low_4 (Length: 476)
Name: NF6966_low_4
Description: NF6966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6966_low_4 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
| [»] scaffold0640 (2 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] scaffold0271 (3 HSPs) |
| | |
|
| [»] scaffold0274 (3 HSPs) |
| | |
|
| [»] scaffold0648 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 83 - 476
Target Start/End: Complemental strand, 41194282 - 41193887
Alignment:
| Q |
83 |
tctttataaattattatgcaaaaggccttgatgggaataattacttgctttctttaaagttgcaaaacaaatataaggtatttgacaaatgatacatgaa |
182 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41194282 |
tcttgataaattattatgcaaaaggccttgatggaaataattacttgcttcctttaaagttgaaaaacaaatataaggtatttgacaaatgatatatgaa |
41194183 |
T |
|
| Q |
183 |
atacattgcactannnnnnn-cttctaaaacatcccaacttaactcatttcattattcaacgagtaaatacaaggagcaacgtaatcataaacttggcga |
281 |
Q |
| |
|
|||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
41194182 |
atacattggactattttttttcttctgaaacatcccaacttaactcatttcattattcaacgagtaaatacaaggagcagcataatcataaacttggcga |
41194083 |
T |
|
| Q |
282 |
ctagcatcataaatggccgctctagctagagtatgagctaccatatccgcttgcctcagaataaacttaacctc-aaagtttcaatttgagactaaaata |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
41194082 |
ctagcatcataaatggccgctctagctagagtatgagctaccatatccgcttgcctcagaattaacttaacctcaaaagttgcaatttgagactaaaata |
41193983 |
T |
|
| Q |
381 |
cacctaatgctgtaaaaaatcacattaaactccgatgcacctccaggtctggcgtgaacaacattgataacttgtgaatcacttaggaacatcaca |
476 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
41193982 |
cacctaatgctgtaaacaatcacattaaactccgatgcacctccaggtctggcgtgaacagcattgataacttgcgaatcacttaggaacatcaca |
41193887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 83 - 476
Target Start/End: Complemental strand, 1043204 - 1042818
Alignment:
| Q |
83 |
tctttataaattattatgcaaaaggccttgatgggaataattacttgctttctttaaagttgcaaaacaaatataaggtatttgacaaatgatacatgaa |
182 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1043204 |
tcttgataaattattatgcaaaaggccttgatgagaataattactttcttcctttaaagttgcaaaacaaatataaggtatttgacaaatgatacatgaa |
1043105 |
T |
|
| Q |
183 |
atacattgcactannnnnnncttctaaaacatcccaacttaactcatttcattattcaacgagtaaatacaaggagcaacgtaatcataaacttggcgac |
282 |
Q |
| |
|
||| ||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1043104 |
atatattgcactattttttttttctgaaacatcctaacttaactcatttcattattcaacgagtaaataca----gcaacgtaatcataaacttggcgac |
1043009 |
T |
|
| Q |
283 |
tagcatcataaatggccgctctagctagagtatgagctaccatatccgcttgcctcagaataaacttaacctcaaagtttcaatttgagactaaaataca |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
1043008 |
tagcatcataaatggccgctctagctagagtatgagctaccatatccgcttgcctca---taaacttcacctcaaagttgcaatttgagactaaaataca |
1042912 |
T |
|
| Q |
383 |
cctaatgctgtaaaaaatcacattaaactccgatgcacctccaggtctggcgtgaacaacattgataacttgtgaatcacttaggaacatcaca |
476 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1042911 |
cctaatgttgtaaacaatcacattaaactccgatgcacatccaggtctggcgtgaacaacattaataacttgtgaatcacttaggaacatcaca |
1042818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 4 - 351
Target Start/End: Complemental strand, 41409447 - 41409093
Alignment:
| Q |
4 |
tatgatctatctaataaaggatttgttatcaattaaaaaccctccaatctatctaatgggaatgttactatgaaagaaatctttataaattattatgcaa |
103 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
41409447 |
tatgatctatctaataaagaatttgttatcaattaaaaaccctccaatctatctaatgggaatgttactatgaaagaaatcttgataaattattatgcaa |
41409348 |
T |
|
| Q |
104 |
aaggccttgatgggaataattacttgctttctttaaagttgcaaaacaaatataaggtatttgacaaatgatacatgaaatacattgcactannnnnnnc |
203 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
41409347 |
aaggccttgatgtgaattattacttgctttctttaaagttgtaaaacaaatataaggtatttgacaaatgctacatgaaatacattgcactactttt--- |
41409251 |
T |
|
| Q |
204 |
ttctaaaacatcccaacttaactcatttcattattcaac---gagtaaatacaaggagcaacgtaatcataaacttggcgactagcatcataaatggccg |
300 |
Q |
| |
|
|||| |||||||| ||| |||||||||| |||||||||| |||||||| ||||||| |||||||||||||| |||||||||||||| | ||||||||| |
|
|
| T |
41409250 |
ttctgaaacatccaaacctaactcattttattattcaacaatgagtaaatgcaaggaggaacgtaatcataaatttggcgactagcataagaaatggccg |
41409151 |
T |
|
| Q |
301 |
ctc-------tagctagagtatgagctaccatatccgcttgcctcagaataaacttaa |
351 |
Q |
| |
|
||| |||||||||||||| ||||||||| |||||| ||| |||||||||||| |
|
|
| T |
41409150 |
ctctagctagtagctagagtatgaactaccatattcgcttggctccgaataaacttaa |
41409093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 218 - 361
Target Start/End: Complemental strand, 5877949 - 5877804
Alignment:
| Q |
218 |
aacttaactcatttcattattcaa---cgagtaaatacaaggagcaacgtaatcataaacttggcgactagcatcataaatggccgctctagctagagta |
314 |
Q |
| |
|
||||||||||||||||||||| || |||| |||||||||| | ||| ||||||| || || | | ||||||| | || || | |||||||||| | || |
|
|
| T |
5877949 |
aacttaactcatttcattattaaataacgaggaaatacaagggg-aacataatcatgaatttagtggctagcataaaaattgacagctctagctaaacta |
5877851 |
T |
|
| Q |
315 |
tgagctaccatatccgcttgcctcagaataaacttaacctcaaagtt |
361 |
Q |
| |
|
|||||||||| || |||||||||| |||||||| | ||||||||| |
|
|
| T |
5877850 |
tgagctaccaaattcgcttgcctccatataaacttcatctcaaagtt |
5877804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 83 - 476
Target Start/End: Original strand, 8233 - 8619
Alignment:
| Q |
83 |
tctttataaattattatgcaaaaggccttgatgggaataattacttgctttctttaaagttgcaaaacaaatataaggtatttgacaaatgatacatgaa |
182 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8233 |
tcttgataaattattatgcaaaaggccttgatgagaataattactttcttcctttaaagttgcaaaacaaatataaggtatttgacaaatgatacatgaa |
8332 |
T |
|
| Q |
183 |
atacattgcactannnnnnncttctaaaacatcccaacttaactcatttcattattcaacgagtaaatacaaggagcaacgtaatcataaacttggcgac |
282 |
Q |
| |
|
||| ||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
8333 |
atatattgcactattttttttttctgaaacatcctaacttaactcatttcattattcaacgagtaaataca----gcaacgtaatcataaacttggcgac |
8428 |
T |
|
| Q |
283 |
tagcatcataaatggccgctctagctagagtatgagctaccatatccgcttgcctcagaataaacttaacctcaaagtttcaatttgagactaaaataca |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
8429 |
tagcatcataaatggccgctctagctagagtatgagctaccatatccgcttgcctca---taaacttcacctcaaagttgcaatttgagactaaaataca |
8525 |
T |
|
| Q |
383 |
cctaatgctgtaaaaaatcacattaaactccgatgcacctccaggtctggcgtgaacaacattgataacttgtgaatcacttaggaacatcaca |
476 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
8526 |
cctaatgttgtaaacaatcacattaaactccgatgcacatccaggtctggcgtgaacaacattaataacttgtgaatcacttaggaacatcaca |
8619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 12 - 351
Target Start/End: Original strand, 1528 - 1874
Alignment:
| Q |
12 |
atctaataaaggatttgttatcaattaaaaaccctccaatctatctaatgggaatgttactatgaaagaaatctttataaattattatgcaaaaggcctt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1528 |
atctaataaaggatttgttatcaattaacaaccctccaatctatctaatgggaatgttactatgaaagaaatcttgataaattattatgcaaaaggcctt |
1627 |
T |
|
| Q |
112 |
gatgggaataattacttgctttctttaaagttgcaaaacaaatataaggtatttgacaaatgatacatgaaatacattgcactannnnnnncttctaaaa |
211 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||| |
|
|
| T |
1628 |
gatgtgaattattacttgctttctttaaagttgtaaaacaaatataaggtatttgacaaatgctacatgaaatacattgcactactttt---ttctgaaa |
1724 |
T |
|
| Q |
212 |
catcccaacttaactcatttcattattcaac---gagtaaatacaaggagcaacgtaatcataaacttggcgactagcatcataaatggccgctc----- |
303 |
Q |
| |
|
||||| ||| |||||||||| |||||||||| |||||||| ||||||| |||||||||||||| |||||||||||||| | |||||||||||| |
|
|
| T |
1725 |
catccaaacctaactcattttattattcaacaatgagtaaatgcaaggaggaacgtaatcataaatttggcgactagcataagaaatggccgctctagct |
1824 |
T |
|
| Q |
304 |
--tagctagagtatgagctaccatatccgcttgcctcagaataaacttaa |
351 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||| |||||||||||| |
|
|
| T |
1825 |
agtagctagagtatgagctaccatattcgcttggctccgaataaacttaa |
1874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 83 - 476
Target Start/End: Complemental strand, 33324795 - 33324409
Alignment:
| Q |
83 |
tctttataaattattatgcaaaaggccttgatgggaataattacttgctttctttaaagttgcaaaacaaatataaggtatttgacaaatgatacatgaa |
182 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33324795 |
tcttgataaattattatgcaaaaggccttgatgagaataattactttcttcctttaaagttgcaaaacaaatataaggtatttgacaaatgatacatgaa |
33324696 |
T |
|
| Q |
183 |
atacattgcactannnnnnncttctaaaacatcccaacttaactcatttcattattcaacgagtaaatacaaggagcaacgtaatcataaacttggcgac |
282 |
Q |
| |
|
||| ||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
33324695 |
atatattgcactattttttttttctgaaacatcctaacttaactcatttcattattcaacgagtaaataca----gcaacgtaatcataaacttggcgac |
33324600 |
T |
|
| Q |
283 |
tagcatcataaatggccgctctagctagagtatgagctaccatatccgcttgcctcagaataaacttaacctcaaagtttcaatttgagactaaaataca |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
33324599 |
tagcatcataaatggccgctctagctagagtatgagctaccatatccgcttgcctca---taaacttcacctcaaagttgcaatttgagactaaaataca |
33324503 |
T |
|
| Q |
383 |
cctaatgctgtaaaaaatcacattaaactccgatgcacctccaggtctggcgtgaacaacattgataacttgtgaatcacttaggaacatcaca |
476 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
33324502 |
cctaatgttgtaaacaatcacattaaactccgatgcacatccaggtctggcgtgaacaacattaataacttgtgaatcacttaggaacatcaca |
33324409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 12 - 351
Target Start/End: Original strand, 22016 - 22362
Alignment:
| Q |
12 |
atctaataaaggatttgttatcaattaaaaaccctccaatctatctaatgggaatgttactatgaaagaaatctttataaattattatgcaaaaggcctt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
22016 |
atctaataaaggatttgttatcaattaacaaccctccaatctatctaatgggaatgttactatgaaagaaatcttgataaattattatgcaaaaggcctt |
22115 |
T |
|
| Q |
112 |
gatgggaataattacttgctttctttaaagttgcaaaacaaatataaggtatttgacaaatgatacatgaaatacattgcactannnnnnncttctaaaa |
211 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||| |
|
|
| T |
22116 |
gatgtgaattattacttgctttctttaaagttgtaaaacaaatataaggtatttgacaaatgctacatgaaatacattgcactactttt---ttctgaaa |
22212 |
T |
|
| Q |
212 |
catcccaacttaactcatttcattattcaac---gagtaaatacaaggagcaacgtaatcataaacttggcgactagcatcataaatggccgctc----- |
303 |
Q |
| |
|
||||| ||| |||||||||| |||||||||| |||||||| ||||||| |||||||||||||| |||||||||||||| | |||||||||||| |
|
|
| T |
22213 |
catccaaacctaactcattttattattcaacaatgagtaaatgcaaggaggaacgtaatcataaatttggcgactagcataagaaatggccgctctagct |
22312 |
T |
|
| Q |
304 |
--tagctagagtatgagctaccatatccgcttgcctcagaataaacttaa |
351 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||| |||||||||||| |
|
|
| T |
22313 |
agtagctagagtatgagctaccatattcgcttggctccgaataaacttaa |
22362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 83 - 307
Target Start/End: Original strand, 12522 - 12749
Alignment:
| Q |
83 |
tctttataaattattatgcaaaaggccttgatgggaataattacttgctttctttaaa-gttgcaaaacaaatataaggtatttgacaaatgatacatga |
181 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12522 |
tcttgataaattattatgcaaaaggccttgatgggaataattacttgcttcctttaaaagttgcaaaacaaatataaggtatttgacaaatgatacatga |
12621 |
T |
|
| Q |
182 |
aatacattgcacta--nnnnnnncttctaaaacatcccaacttaactcatttcattattcaacgagtaaatacaaggagcaacgtaatcataaacttggc |
279 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
12622 |
aatacattgcactatttttttttcttctgaaacatcccaacttaactcatttcgttattcaacgagtaaatacaaggagcaatgtaatcataaacttggc |
12721 |
T |
|
| Q |
280 |
gactagcatcataaatggccgctctagc |
307 |
Q |
| |
|
||||||||| ||||||| |||||||||| |
|
|
| T |
12722 |
gactagcatgataaatgaccgctctagc |
12749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 83 - 141
Target Start/End: Original strand, 4662 - 4720
Alignment:
| Q |
83 |
tctttataaattattatgcaaaaggccttgatgggaataattacttgctttctttaaag |
141 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4662 |
tcttgataaattattatgcaaaaggccttgatgggaataattacttgcttcctttaaag |
4720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 166; Significance: 1e-88; HSPs: 3)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 83 - 307
Target Start/End: Original strand, 22606 - 22832
Alignment:
| Q |
83 |
tctttataaattattatgcaaaaggccttgatgggaataattacttgctttctttaaa-gttgcaaaacaaatataaggtatttgacaaatgatacatga |
181 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22606 |
tcttgataaattattatgcaaaaggccttgatgggaataattacttgcttcctttaaaagttgcaaaacaaatataaggtatttgacaaatgatacatga |
22705 |
T |
|
| Q |
182 |
aatacattgcacta-nnnnnnncttctaaaacatcccaacttaactcatttcattattcaacgagtaaatacaaggagcaacgtaatcataaacttggcg |
280 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
22706 |
aatacattgcactattttttttcttctgaaacatcccaacttaactcatttcgttattcaacgagtaaatacaaggagcaatgtaatcataaacttggcg |
22805 |
T |
|
| Q |
281 |
actagcatcataaatggccgctctagc |
307 |
Q |
| |
|
|||||||| |||||||||||||||||| |
|
|
| T |
22806 |
actagcatgataaatggccgctctagc |
22832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 83 - 307
Target Start/End: Complemental strand, 4628 - 4403
Alignment:
| Q |
83 |
tctttataaattattatgcaaaaggccttgatgggaataattacttgctttctttaaagttgcaaaacaaatataaggtatttgacaaatgatacatgaa |
182 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4628 |
tcttgataaattattatgcaaaaggccttgatgggaataattacttgcttcctttaaagttgcaaaacaaatataaggtatttgacaaatgatacatgaa |
4529 |
T |
|
| Q |
183 |
atacattgcacta--nnnnnnncttctaaaacatcccaacttaactcatttcattattcaacgagtaaatacaaggagcaacgtaatcataaacttggcg |
280 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4528 |
atacattgcactatttttttttcttctgaaacatcccaacttaactcatttcgttattcaacgagtaaatacaaggagcaatgtaatcataaacttggcg |
4429 |
T |
|
| Q |
281 |
actagcatcataaatggccgctctagc |
307 |
Q |
| |
|
|||||||| |||||| ||||||||||| |
|
|
| T |
4428 |
actagcatgataaat-gccgctctagc |
4403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274; HSP #3
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 83 - 307
Target Start/End: Complemental strand, 1550 - 1323
Alignment:
| Q |
83 |
tctttataaattattatgcaaaaggccttgatgggaataattacttgctttctttaaa-gttgcaaaacaaatataaggtatttgacaaatgatacatga |
181 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1550 |
tcttgataaattattatgcaaaaggccttgatgggaataattacttgcttcctttaaaagttgcaaaacaaatataaggtatttgacaaatgatacatga |
1451 |
T |
|
| Q |
182 |
aatacattgcacta--nnnnnnncttctaaaacatcccaacttaactcatttcattattcaacgagtaaatacaaggagcaacgtaatcataaacttggc |
279 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1450 |
aatacattgcactattttttttctttctgaaacatcccaacttaactcatttcgttattcaacgagtaaatacaaggagcaatgtaatcataaacttggc |
1351 |
T |
|
| Q |
280 |
gactagcatcataaatggccgctctagc |
307 |
Q |
| |
|
||||||||| |||||||||||||||||| |
|
|
| T |
1350 |
gactagcatgataaatggccgctctagc |
1323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 83 - 256
Target Start/End: Complemental strand, 2077 - 1902
Alignment:
| Q |
83 |
tctttataaattattatgcaaaaggccttgatgggaataattacttgctttctttaaa-gttgcaaaacaaatataaggtatttgacaaatgatacatga |
181 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2077 |
tcttgataaattattatgcaaaaggccttgatgggaataattacttgcttcctttaaaagttgcaaaacaaatataaggtatttgacaaatgatacatga |
1978 |
T |
|
| Q |
182 |
aatacattgcacta--nnnnnnncttctaaaacatcccaacttaactcatttcattattcaacgagtaaatacaagg |
256 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1977 |
aatacattgcactatttttttttcttctgaaacatcccaacttaactcatttc-ttattcaacgagtaaatacaagg |
1902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 257 - 307
Target Start/End: Complemental strand, 4969 - 4919
Alignment:
| Q |
257 |
agcaacgtaatcataaacttggcgactagcatcataaatggccgctctagc |
307 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4969 |
agcaatgtaatcataaacttggcgactagcatgataaatggccgctctagc |
4919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 300 - 380
Target Start/End: Complemental strand, 43503241 - 43503161
Alignment:
| Q |
300 |
gctctagctagagtatgagctaccatatccgcttgcctcagaataaacttaacctcaaagtttcaatttgagactaaaata |
380 |
Q |
| |
|
||||||| |||| ||||| |||| ||||| ||||| || |||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
43503241 |
gctctagttagattatgaactactatatctgcttgtctttgaataaacttaacctcaaagttacaattcgagactaaaata |
43503161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 68 - 179
Target Start/End: Original strand, 28130778 - 28130889
Alignment:
| Q |
68 |
ttactatgaaagaaatctttataaattattatgcaaaaggccttgatgggaataattacttgctttctttaaagttgcaaaacaaatataaggtatttga |
167 |
Q |
| |
|
||||||||||||||||||| | |||||||||||| |||||| || ||||||| || ||||| | | ||||||||| || ||||| |||||||||||| |
|
|
| T |
28130778 |
ttactatgaaagaaatcttgacaaattattatgcgaaaggcattagtgggaatgcttgcttgcgtccgttaaagttgtgaagcaaatgtaaggtatttga |
28130877 |
T |
|
| Q |
168 |
caaatgatacat |
179 |
Q |
| |
|
|| ||| ||||| |
|
|
| T |
28130878 |
cagatgctacat |
28130889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 68 - 179
Target Start/End: Original strand, 41242397 - 41242508
Alignment:
| Q |
68 |
ttactatgaaagaaatctttataaattattatgcaaaaggccttgatgggaataattacttgctttctttaaagttgcaaaacaaatataaggtatttga |
167 |
Q |
| |
|
||||||||||||||||||| | |||||||||||| |||||| || ||||||| || ||||| | | ||||||||| || ||||| |||||||||||| |
|
|
| T |
41242397 |
ttactatgaaagaaatcttgacaaattattatgcgaaaggcattagtgggaatgcttgcttgcgtccgttaaagttgtgaagcaaatgtaaggtatttga |
41242496 |
T |
|
| Q |
168 |
caaatgatacat |
179 |
Q |
| |
|
|| ||| ||||| |
|
|
| T |
41242497 |
cagatgctacat |
41242508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 344 - 388
Target Start/End: Original strand, 3428005 - 3428049
Alignment:
| Q |
344 |
aaacttaacctcaaagtttcaatttgagactaaaatacacctaat |
388 |
Q |
| |
|
|||||||||||||||||| ||||| || ||||||||||| ||||| |
|
|
| T |
3428005 |
aaacttaacctcaaagttacaattcgaaactaaaatacatctaat |
3428049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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