View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6966_low_5 (Length: 459)
Name: NF6966_low_5
Description: NF6966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6966_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 419; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 18 - 452
Target Start/End: Complemental strand, 35094547 - 35094113
Alignment:
| Q |
18 |
gagggttcggtaagatcacgcgcaagcagtaataccagtagcagaaaaggagatagcaagttgtcctttgtgagggaagaagtatcagcacaatttgatt |
117 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35094547 |
gagggttcggtaagatcacgcacaagcagtaataccagtagcagaaaaggagatagcaagttgtcctttgtgagggaagaagtatcagcacaatttgatt |
35094448 |
T |
|
| Q |
118 |
tgcaagatcttttgagagccgctgctgagatattaggaagtggttgtcacagttcatcctataaggctgctttgttgactggccctactgttgtcgtcaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35094447 |
tgcaagatcttttgagagccgctgctgagatattaggaagtggttgtcacagttcatcctataaggctgctttgttgactggccctactgttgtcgtcaa |
35094348 |
T |
|
| Q |
218 |
aagatacaaacaaatgaacaatgttaataggccagagtttcaagagcacatgagaagactgggaaggttgaatcatccgaatctccttcctctcgtagct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
35094347 |
aagatacaaacaaatgaacaatgttaataggccagagtttcaagagcacatgagaagactaggaaggttgaatcatccgaatctccttcctctcgtagct |
35094248 |
T |
|
| Q |
318 |
tactactacaaaagagacgagaaacttttcatcaccgactttgttcccaatggaagcttggccgttcgccttcacggtattttcattttcacttcaacta |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35094247 |
tactactacaaaagagacgagaaacttttcatcaccgactttgttcccaatggaagcttggccgttcgccttcacggtattttcattttcacttcaacta |
35094148 |
T |
|
| Q |
418 |
ataaacatcatagaatataagtttaatattcttcg |
452 |
Q |
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|||||||||| ||||||||||||||||||| |||| |
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| T |
35094147 |
ataaacatcagagaatataagtttaatatttttcg |
35094113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 436
Target Start/End: Original strand, 32863427 - 32863466
Alignment:
| Q |
397 |
ttttcattttcacttcaactaataaacatcatagaatata |
436 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||||| |
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| T |
32863427 |
ttttcatttttacttcaactaataaacatgatagaatata |
32863466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 447
Target Start/End: Original strand, 14390477 - 14390526
Alignment:
| Q |
398 |
tttcattttcacttcaactaataaacatcatagaatataagtttaatatt |
447 |
Q |
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||||||||||||||||||||| |||||| ||| ||||||| || |||||| |
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| T |
14390477 |
tttcattttcacttcaactaaaaaacatgatacaatataaattcaatatt |
14390526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 397 - 447
Target Start/End: Complemental strand, 47364879 - 47364829
Alignment:
| Q |
397 |
ttttcattttcacttcaactaataaacatcatagaatataagtttaatatt |
447 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||| |||| ||||||||| |
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| T |
47364879 |
ttttcattttcacttcaactaataaacataaaagaaaataaatttaatatt |
47364829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 435
Target Start/End: Complemental strand, 13806182 - 13806144
Alignment:
| Q |
397 |
ttttcattttcacttcaactaataaacatcatagaatat |
435 |
Q |
| |
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||||||||||||||||||||||||||||| | ||||||| |
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|
| T |
13806182 |
ttttcattttcacttcaactaataaacataagagaatat |
13806144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 394 - 436
Target Start/End: Original strand, 10195349 - 10195391
Alignment:
| Q |
394 |
gtattttcattttcacttcaactaataaacatcatagaatata |
436 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||| |||||| |
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| T |
10195349 |
gtattttcattttcacttcaactaatagacatgataaaatata |
10195391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 447
Target Start/End: Original strand, 43537569 - 43537619
Alignment:
| Q |
397 |
ttttcattttcacttcaactaataaacatcatagaatataagtttaatatt |
447 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
43537569 |
ttttcattttcacttcaactaataaacataggagaatatagatttaatatt |
43537619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 396
Target Start/End: Original strand, 42509285 - 42509430
Alignment:
| Q |
251 |
agagtttcaagagcacatgagaagactgggaaggttgaatcatccgaatctccttcctctcgtagcttactactacaaaagagacgagaaacttttcatc |
350 |
Q |
| |
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||||||||||||||| |||||||| | ||||||||||| ||||| ||| | ||||||| || |||||||| || | || ||| ||||| || || | |
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| T |
42509285 |
agagtttcaagagcatatgagaaggattggaaggttgaaccatcctaatttgattcctcttgttgcttactattatagaaaagaagagaagctcttggtt |
42509384 |
T |
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| Q |
351 |
accgactttgttcccaatggaagcttggccgttcgccttcacggta |
396 |
Q |
| |
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||||||||||||| || || ||| | || ||||||||||| |||| |
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| T |
42509385 |
accgactttgttcagaacggtagcctagctgttcgccttcatggta |
42509430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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