View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6966_low_6 (Length: 417)
Name: NF6966_low_6
Description: NF6966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6966_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 19 - 397
Target Start/End: Original strand, 31903417 - 31903795
Alignment:
| Q |
19 |
aatcggtaaatctcaatcccaatcaccaaatccccattctgctcttcaatttccaccccacattccttcttcctcctcaccacaagcccctctgccttcg |
118 |
Q |
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| T |
31903417 |
aatcggtaaatctcaatcccaatcaccaaatccccattctgctcttcaatttccaccccacattccttcttcctcctcaccacaagtccctctgccttcg |
31903516 |
T |
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| Q |
119 |
cggccgcctcagccttctccacaaccttctccggtaactccctcaacataaacctctcaccttcaccaccatcaataaaaaaccctgaaagattcaaccc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31903517 |
cggccgcctcagccttctccacaaccttctccggtaactccctcaacataaacctctcaccttcaccaccatcaataaaaaaccctgaaagattcaaccc |
31903616 |
T |
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| Q |
219 |
tctagagaaaaacgatataatatcaaacgcattgaaatccaacggttttccctcttcttccccattattaaccttcttctcaaattcaaaaccctcctca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31903617 |
tctagagaaaaacgatataatatcaaacgcattgaaatccaacggttttccctcttcttccccattattaaccttcttctcaaattcaaaaccctcctca |
31903716 |
T |
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| Q |
319 |
taaaacttcacctctttatacccttttctaaaccaaggatccctcaaaatctcatcaacagttatcctcgtctccggat |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31903717 |
taaaacttcacctctttatacccttttctaaaccaaggatccctcaaaatctcatcaacagttatcctcgtctccggat |
31903795 |
T |
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