View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6966_low_7 (Length: 411)

Name: NF6966_low_7
Description: NF6966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6966_low_7
NF6966_low_7
[»] chr4 (5 HSPs)
chr4 (21-285)||(4909498-4909769)
chr4 (21-167)||(4885428-4885573)
chr4 (291-403)||(4909830-4909942)
chr4 (339-399)||(21410188-21410248)
chr4 (344-399)||(4783707-4783762)
[»] chr3 (4 HSPs)
chr3 (316-399)||(18442079-18442162)
chr3 (316-399)||(19487153-19487236)
chr3 (354-399)||(20374293-20374338)
chr3 (362-399)||(34691705-34691742)
[»] chr1 (1 HSPs)
chr1 (344-399)||(26497843-26497898)
[»] scaffold0859 (1 HSPs)
scaffold0859 (358-399)||(2124-2165)
[»] chr8 (1 HSPs)
chr8 (287-315)||(21589212-21589240)
[»] chr2 (1 HSPs)
chr2 (290-318)||(10332289-10332317)


Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 21 - 285
Target Start/End: Original strand, 4909498 - 4909769
Alignment:
Q  21 accgagacattagagggtaaaaaccatgaagggttcaagaagagttagtgg---atcaggaaaattctccgataattcaaataaaatggtacttgaggag 117  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| ||||   |||||||||||||||||||||||||||||||||||||||| |||||    
T  4909498 accgagacattagagggtaaaaaccatgaggggttcaagaagagttggtggtggatcaggaaaattctccgataattcaaataaaatggtacttaaggag 4909597  T
Q  118 atcaattcagaagcaacatcatatcaagattgaagttttaaatgtgaacagcttgtcatttttaagggcataatagccaaagaacaactgaaatcgaaag 217  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  4909598 atcaattcagaagcaacatcatatcaaaatttaagttttaaatgtaaacagcttgtcatttttaagggcatgatagccaaagatcaactgaaatcgaaag 4909697  T
Q  218 tctttgcaaacaatttatgtaagaaaacaaag----aagaactaatgttatgtatcagattttaaaatttgt 285  Q
    ||||||||||||||||||||||||||||||||    ||||||||||||||||||||| ||||||||||||||    
T  4909698 tctttgcaaacaatttatgtaagaaaacaaagaagaaagaactaatgttatgtatcaaattttaaaatttgt 4909769  T

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Target: chr4; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 21 - 167
Target Start/End: Original strand, 4885428 - 4885573
Alignment:
Q  21 accgagacattagagggtaaaaaccatgaagggttcaagaagagttagtggatcaggaaaattctccgataattcaaataaaatggtacttgaggagatc 120  Q
    ||||||||||||||| |||||| ||||||| |||||||||||||   ||||||||||||| |||||||||||||||||||||||| |||||| |||||||    
T  4885428 accgagacattagagagtaaaagccatgaaaggttcaagaagagcaggtggatcaggaaa-ttctccgataattcaaataaaatgatacttgtggagatc 4885526  T
Q  121 aattcagaagcaacatcatatcaagattgaagttttaaatgtgaaca 167  Q
    |||||||||||||||||||||  ||||| |||||||||||| |||||    
T  4885527 aattcagaagcaacatcatattgagattaaagttttaaatgagaaca 4885573  T

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Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 291 - 403
Target Start/End: Original strand, 4909830 - 4909942
Alignment:
Q  291 accttccatatattatgcattgtccttaactgccgaagaaaggaacctgcgggagttaattgccgatgatctgttataagaacagaacatgcatatgagt 390  Q
    ||||||||||||||||| ||||| |||||||||| ||||||||||| ||||| |||||| ||||||||||||||||||||||||||||| |||||  |||    
T  4909830 accttccatatattatgtattgttcttaactgcctaagaaaggaacatgcggcagttaactgccgatgatctgttataagaacagaacaggcatagaagt 4909929  T
Q  391 ttccaaaacacca 403  Q
    |||||||||||||    
T  4909930 ttccaaaacacca 4909942  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 339 - 399
Target Start/End: Original strand, 21410188 - 21410248
Alignment:
Q  339 gcgggagttaattgccgatgatctgttataagaacagaacatgcatatgagtttccaaaac 399  Q
    |||| |||||| ||||| |||||||||||||||||| ||||  |||| |||||||||||||    
T  21410188 gcggtagttaactgccgttgatctgttataagaacaaaacagacataggagtttccaaaac 21410248  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 399
Target Start/End: Original strand, 4783707 - 4783762
Alignment:
Q  344 agttaattgccgatgatctgttataagaacagaacatgcatatgagtttccaaaac 399  Q
    |||||| ||||||| ||||||| |||||||||||||  |||| |||||||||||||    
T  4783707 agttaactgccgataatctgttttaagaacagaacaaacataggagtttccaaaac 4783762  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 316 - 399
Target Start/End: Complemental strand, 18442162 - 18442079
Alignment:
Q  316 ttaactgccgaagaaaggaacctgcgggagttaattgccgatgatctgttataagaacagaacatgcatatgagtttccaaaac 399  Q
    |||||| |||| |||||||||| |||| |||||| | |||||||||||||||||||||| ||||  |||| ||||||| |||||    
T  18442162 ttaactaccgaggaaaggaaccggcggcagttaactaccgatgatctgttataagaacataacaaacataggagtttctaaaac 18442079  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 316 - 399
Target Start/End: Complemental strand, 19487236 - 19487153
Alignment:
Q  316 ttaactgccgaagaaaggaacctgcgggagttaattgccgatgatctgttataagaacagaacatgcatatgagtttccaaaac 399  Q
    |||||| |||| |||||||||| |||| |||||| | |||||||||||||||||||||| ||||  |||| ||||||| |||||    
T  19487236 ttaactaccgaggaaaggaaccggcggcagttaactaccgatgatctgttataagaacataacaaacataggagtttctaaaac 19487153  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 354 - 399
Target Start/End: Original strand, 20374293 - 20374338
Alignment:
Q  354 cgatgatctgttataagaacagaacatgcatatgagtttccaaaac 399  Q
    ||||||||||||||||||||||||||  |||| |||||||||||||    
T  20374293 cgatgatctgttataagaacagaacagacataggagtttccaaaac 20374338  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 362 - 399
Target Start/End: Original strand, 34691705 - 34691742
Alignment:
Q  362 tgttataagaacagaacatgcatatgagtttccaaaac 399  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  34691705 tgttataagaacagaacagacatatgagtttccaaaac 34691742  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 344 - 399
Target Start/End: Complemental strand, 26497898 - 26497843
Alignment:
Q  344 agttaattgccgatgatctgttataagaacagaacatgcatatgagtttccaaaac 399  Q
    |||||| |||||||| ||||||||||||||||||||| ||||  ||||||||||||    
T  26497898 agttaactgccgatgttctgttataagaacagaacatacatagaagtttccaaaac 26497843  T

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Target: scaffold0859 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0859
Description:

Target: scaffold0859; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 399
Target Start/End: Complemental strand, 2165 - 2124
Alignment:
Q  358 gatctgttataagaacagaacatgcatatgagtttccaaaac 399  Q
    ||||||||||||||||||||||  |||| |||||||||||||    
T  2165 gatctgttataagaacagaacagacataggagtttccaaaac 2124  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 315
Target Start/End: Original strand, 21589212 - 21589240
Alignment:
Q  287 ccggaccttccatatattatgcattgtcc 315  Q
    |||||||||||||||||||||||||||||    
T  21589212 ccggaccttccatatattatgcattgtcc 21589240  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 318
Target Start/End: Original strand, 10332289 - 10332317
Alignment:
Q  290 gaccttccatatattatgcattgtcctta 318  Q
    |||||||||||||||||||||||||||||    
T  10332289 gaccttccatatattatgcattgtcctta 10332317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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