View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6967_low_5 (Length: 235)
Name: NF6967_low_5
Description: NF6967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6967_low_5 |
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| [»] scaffold2079 (1 HSPs) |
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Alignment Details
Target: scaffold2079 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 14 - 212
Target Start/End: Original strand, 96 - 290
Alignment:
| Q |
14 |
agatgaagaagaagttgagtagaagataaaagagnnnnnnnnnccattcggtgtagcaaatcaattttgtaggaaaacctctttgaagctaggagaaaga |
113 |
Q |
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| T |
96 |
agatgaagaagaagttaagtagaagataaaagagaaaaaaaa---atccggtgtagcaaatcaattttgtaggaaaacctctttgaagtttggagaaaga |
192 |
T |
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| Q |
114 |
gatagtctcttgcaaaataacatcgatnnnnnnnngtgaatataaaagaatattttggaacgcagacactacttttttgcaatattaagatagcctact |
212 |
Q |
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| T |
193 |
aatagtctcttgcaaaataacatggataaaaaaaa-tgaatataaaagaatattttggaacgcaggcactacttttttgcaatattaagatagcctact |
290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 65 - 212
Target Start/End: Original strand, 6241962 - 6242110
Alignment:
| Q |
65 |
tgtagcaaatcaattttgtaggaaaacctctttgaagctaggagaaagagatagtctcttgcaaaataacatcgat-nnnnnnnngtgaatataaaagaa |
163 |
Q |
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| T |
6241962 |
tgtagcaaatcaattttttaagaaaacctctttgaagtttggagaaagagatagtctcttgcaaaataataacgataaaaaaaaagtgaatgtaaaagaa |
6242061 |
T |
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| Q |
164 |
tattttggaacgcagacactacttttttgcaatattaagatagcctact |
212 |
Q |
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| T |
6242062 |
tattttgaaacgtgggcactacttttttgcaatattaagttagtctact |
6242110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 6241912 - 6241945
Alignment:
| Q |
14 |
agatgaagaagaagttgagtagaagataaaagag |
47 |
Q |
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| T |
6241912 |
agatgaagaagaagttaagtagaagataaaagag |
6241945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 135
Target Start/End: Original strand, 15641840 - 15641907
Alignment:
| Q |
68 |
agcaaatcaattttgtaggaaaacctctttgaagctaggagaaagagatagtctcttgcaaaataaca |
135 |
Q |
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| T |
15641840 |
agcaaataaattctgtaggaaaacatctttgaagcttggaggaagagaacgcctcttgcaaaataaca |
15641907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 132
Target Start/End: Original strand, 15622006 - 15622057
Alignment:
| Q |
82 |
gtaggaaaacctctttgaagctaggagaaagagata-gtctcttgcaaaata |
132 |
Q |
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| T |
15622006 |
gtaggaaaacctctttgaagcttggaggaagagaaacgtctcttgcaaaata |
15622057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 132
Target Start/End: Original strand, 15643846 - 15643897
Alignment:
| Q |
82 |
gtaggaaaacctctttgaagctaggagaaagagata-gtctcttgcaaaata |
132 |
Q |
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| T |
15643846 |
gtaggaaaacctctttgaagcttggaggaagagaaacgtctcttgcaaaata |
15643897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 132
Target Start/End: Original strand, 15652896 - 15652947
Alignment:
| Q |
82 |
gtaggaaaacctctttgaagctaggagaaagagata-gtctcttgcaaaata |
132 |
Q |
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| T |
15652896 |
gtaggaaaacctctttgaagcttggaggaagagaaacgtctcttgcaaaata |
15652947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 135
Target Start/End: Complemental strand, 43724943 - 43724873
Alignment:
| Q |
65 |
tgtagcaaatcaattttgtaggaaaacctctttgaagctaggagaaagagatagtctcttgcaaaataaca |
135 |
Q |
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| T |
43724943 |
tgtagcaaataatttttgcgggaaaacctatttaaagtttggagaaagagaacgtctcttgcaaaataaca |
43724873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 135
Target Start/End: Complemental strand, 10682732 - 10682669
Alignment:
| Q |
71 |
aaatcaattttgtaggaaaacctctttgaagctaggagaaagagatagtctcttgcaaaataaca |
135 |
Q |
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| T |
10682732 |
aaataaattttgtag-aaaatctctttgaagcttggagaaagagaacatgtcttgcaaaataaca |
10682669 |
T |
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