View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6967_low_6 (Length: 222)

Name: NF6967_low_6
Description: NF6967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6967_low_6
NF6967_low_6
[»] chr3 (4 HSPs)
chr3 (1-215)||(5404421-5404634)
chr3 (27-127)||(32324537-32324637)
chr3 (28-125)||(34964194-34964291)
chr3 (39-126)||(34199088-34199174)
[»] chr2 (4 HSPs)
chr2 (29-108)||(36095521-36095599)
chr2 (41-95)||(38764212-38764266)
chr2 (75-127)||(12023710-12023762)
chr2 (39-87)||(40100508-40100556)
[»] chr7 (2 HSPs)
chr7 (72-126)||(44171922-44171976)
chr7 (58-128)||(7424736-7424806)
[»] chr6 (2 HSPs)
chr6 (40-94)||(4003963-4004017)
chr6 (39-125)||(22506332-22506418)
[»] chr1 (2 HSPs)
chr1 (43-120)||(51714753-51714830)
chr1 (39-108)||(50414509-50414578)
[»] chr4 (2 HSPs)
chr4 (41-128)||(4299450-4299537)
chr4 (52-127)||(56576472-56576545)


Alignment Details
Target: chr3 (Bit Score: 115; Significance: 1e-58; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 5404421 - 5404634
Alignment:
Q  1 acgaatagttcagtagaactcaagtgtgattcctgaagggaacaattattggccagactttacttccctgccagccgaactccggattactaggggcccc 100  Q
    ||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||    
T  5404421 acgaatagttcagaagaactcaagtttgattcctgatgggaacaattattggccagactttacttacctgccagctgaactccggattactaagggcccc 5404520  T
Q  101 ttcccctaggcaccggagggctaacaccnnnnnnnnnntctatgattatgacttatgcacggtnnnnnnntcccaattagcatctgataggaactcgggt 200  Q
    |||||||||||||||||||| |||||||          ||||||||||||||||||||| |||       ||||||||||||||||||||| ||| ||||    
T  5404521 ttcccctaggcaccggagggttaacacc-aaaaaaaaatctatgattatgacttatgcagggtaaaaaaatcccaattagcatctgatagggactagggt 5404619  T
Q  201 attatgtgatgtcca 215  Q
    |||||||| ||||||    
T  5404620 attatgtggtgtcca 5404634  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 27 - 127
Target Start/End: Complemental strand, 32324637 - 32324537
Alignment:
Q  27 tgattcctgaagggaacaattattggccagactttacttccctgccagccgaactccggattactaggggccccttcccctaggcaccggagggctaaca 126  Q
    |||||||||  |||||||||| |||||||| |||||||| ||| || ||| |||||||||||||||||| ||| |||||| ||| || |||||| |||||    
T  32324637 tgattcctggtgggaacaattcttggccaggctttacttacctcccggccaaactccggattactagggcccctttccccaaggaactggagggttaaca 32324538  T
Q  127 c 127  Q
    |    
T  32324537 c 32324537  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 28 - 125
Target Start/End: Original strand, 34964194 - 34964291
Alignment:
Q  28 gattcctgaagggaacaattattggccagactttacttccctgccagccgaactccggattactaggggccccttcccctaggcaccggagggctaac 125  Q
    ||||||| | |||||||||||||| ||||||||||||| ||| |||||||||||||   |||||| ||  || |||||||||| ||||||||| ||||    
T  34964194 gattcctaatgggaacaattattgaccagactttacttacctcccagccgaactccaacttactatggcacctttcccctaggaaccggagggttaac 34964291  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 126
Target Start/End: Complemental strand, 34199174 - 34199088
Alignment:
Q  39 ggaacaattattggccagactttacttccctgccagccgaactccggattactaggggccccttcccctaggcaccggagggctaaca 126  Q
    ||||||||| ||||||||  ||||||| ||| || ||||||||| |||| ||||||| |||||||||| ||| ||||||||| |||||    
T  34199174 ggaacaattcttggccaggatttacttacctcccggccgaactctggatcactaggg-ccccttccccaaggaaccggagggttaaca 34199088  T

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Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 29 - 108
Target Start/End: Original strand, 36095521 - 36095599
Alignment:
Q  29 attcctgaagggaacaattattggccagactttacttccctgccagccgaactccggattactaggggccccttccccta 108  Q
    |||||||  |||||||||| ||||||||||||||||| ||| ||||||||||||| |||||||| || ||||||||||||    
T  36095521 attcctggtgggaacaattcttggccagactttacttacctcccagccgaactccagattacta-ggcccccttccccta 36095599  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 38764266 - 38764212
Alignment:
Q  41 aacaattattggccagactttacttccctgccagccgaactccggattactaggg 95  Q
    ||||||| ||| ||||||||||||| ||| ||| | |||||||||||||||||||    
T  38764266 aacaattcttgaccagactttacttacctcccaactgaactccggattactaggg 38764212  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 127
Target Start/End: Complemental strand, 12023762 - 12023710
Alignment:
Q  75 ccgaactccggattactaggggccccttcccctaggcaccggagggctaacac 127  Q
    ||||||||| ||||||||| | |||||||||||||| || |||||| ||||||    
T  12023762 ccgaactccagattactagagcccccttcccctaggaactggagggttaacac 12023710  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 40100556 - 40100508
Alignment:
Q  39 ggaacaattattggccagactttacttccctgccagccgaactccggat 87  Q
    ||||||||| ||||||||||||||||| ||| || || |||||||||||    
T  40100556 ggaacaattcttggccagactttacttaccttccggcggaactccggat 40100508  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 126
Target Start/End: Original strand, 44171922 - 44171976
Alignment:
Q  72 cagccgaactccggattactaggggccccttcccctaggcaccggagggctaaca 126  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||| |||||    
T  44171922 cagccgaactccggattactagggcccccttcccctaggaaccggagggttaaca 44171976  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 128
Target Start/End: Complemental strand, 7424806 - 7424736
Alignment:
Q  58 ctttacttccctgccagccgaactccggattactaggggccccttcccctaggcaccggagggctaacacc 128  Q
    |||||||| ||| |||||||||||| ||||||  |||| ||| ||||||| || ||||||||| |||||||    
T  7424806 ctttacttacctcccagccgaactctggattaacagggcccctttcccctgggaaccggagggttaacacc 7424736  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 4003963 - 4004017
Alignment:
Q  40 gaacaattattggccagactttacttccctgccagccgaactccggattactagg 94  Q
    ||||||||||||||||||| |||||| ||| |  |||||||||||||||||||||    
T  4003963 gaacaattattggccagaccttacttacctcctggccgaactccggattactagg 4004017  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 125
Target Start/End: Original strand, 22506332 - 22506418
Alignment:
Q  39 ggaacaattattggccagactttacttccctgccagccgaactccggattactaggggccccttcccctaggcaccggagggctaac 125  Q
    ||||||||||||||||||||| | ||| |||  | |||||||||||| ||||||||| ||| |||| || || ||||||||| ||||    
T  22506332 ggaacaattattggccagactatccttacctcactgccgaactccgggttactagggaccctttccactgggaaccggagggttaac 22506418  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 120
Target Start/End: Complemental strand, 51714830 - 51714753
Alignment:
Q  43 caattattggccagactttacttccctgccagccgaactccggattactaggggccccttcccctaggcaccggaggg 120  Q
    |||||||||||||| ||||||||  || |  ||||||||||| |||||||||  ||| |||||||||| |||||||||    
T  51714830 caattattggccaggctttacttatctcctggccgaactccgaattactaggtcccctttcccctaggaaccggaggg 51714753  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 108
Target Start/End: Complemental strand, 50414578 - 50414509
Alignment:
Q  39 ggaacaattattggccagactttacttccctgccagccgaactccggattactaggggccccttccccta 108  Q
    ||||||||| ||||| ||||||| ||| ||| |  |||||||| ||||||||||||| ||| ||||||||    
T  50414578 ggaacaattcttggctagacttttcttacctcctggccgaactacggattactagggcccctttccccta 50414509  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 128
Target Start/End: Original strand, 4299450 - 4299537
Alignment:
Q  41 aacaattattggccagactttacttccctgccagccgaactccggattactaggggccccttcccctaggcaccggagggctaacacc 128  Q
    ||||||| || ||||| |||||||| |||  | || |||| ||||||||||||||  || |||||||||| ||||||||| |||||||    
T  4299450 aacaattcttagccaggctttacttacctcgcggctgaacaccggattactagggctcctttcccctaggaaccggagggttaacacc 4299537  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 127
Target Start/End: Original strand, 56576472 - 56576545
Alignment:
Q  52 gccagactttacttccctgccagccgaactccggattactaggggccccttcccctaggcaccggagggctaacac 127  Q
    |||| ||||||||| ||| || |||||||||||| ||||||  |||||| ||||||| | ||||||||| ||||||    
T  56576472 gccaaactttacttacctcccggccgaactccgggttacta--ggccccgtcccctatgaaccggagggttaacac 56576545  T

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