View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6968_high_1 (Length: 335)
Name: NF6968_high_1
Description: NF6968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6968_high_1 |
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| [»] chr2 (10 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 17109390 - 17109724
Alignment:
| Q |
1 |
gctgtgactctctaacgaccttccctctcaaactgttcccgaatcttgacactctagatgtttataagtgtattaatttcgaaatgatttcacaggaaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17109390 |
gctgtgactctctaacgaccttccctctcaaactgttcccgaatcttgacactcttgatgtttataagtgtattaatttcgaaatgatttcacaggaaaa |
17109489 |
T |
|
| Q |
101 |
tgaacatcttaaactcacatctctctcaattgaagagtgtcctaaatttgcatcatttccaaatggaggattgtctgcaccaaggcttcagcagttttat |
200 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
17109490 |
tgaacatcttaaactcacatctctcttaattgaagagtgtcctaaatttgcatcatttccaaatggaggattgtctgcacccaggcttcagcagttttat |
17109589 |
T |
|
| Q |
201 |
ctttcaaaattagaggagttaaaatcacttcctgaatgcatgcatatcctccttccatctctctataagctgtctataaatgattgtccacaattggtgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17109590 |
ctttcaaaattagaggagttaaaatcacttcctgaatgcatgcatatcctccttccatctctctataagctgtctataaatgattgtccacaattggtgt |
17109689 |
T |
|
| Q |
301 |
ccttctccgctagaggtttgccttcaagtataaaa |
335 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
17109690 |
ccttctccgctagaggtttgccttcaagtataaaa |
17109724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 16978058 - 16978385
Alignment:
| Q |
1 |
gctgtgactctctaacgaccttccctctcaaactgttcccgaatcttgacactctagatgtttataagtgtattaatttcgaaatgatttcacaggaaaa |
100 |
Q |
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|||| ||||||||||| || ||||| || || |||||||| |||||||| ||| || |||||||||||| || ||| |||||||||||||||||||| |
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| T |
16978058 |
gctgcgactctctaacaacattcccgctgaatctgttcccaaatcttgattttctcgacctttataagtgtagtagttttgaaatgatttcacaggaaaa |
16978157 |
T |
|
| Q |
101 |
tgaacatcttaaactcacatctctctcaattgaagagtgtcctaaatttgcatcatttccaaatggaggattgtctgcaccaaggcttcagcagttttat |
200 |
Q |
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||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||| || || ||| || |
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| T |
16978158 |
tgagcatcttaaactcacatctctctcaattggagagtgtcctaaatttgcatcatttccaaaaggaggattgtctacaccaaggctgcaacactttgat |
16978257 |
T |
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| Q |
201 |
ctttcaaaattagaggagttaaaatcacttcctgaatgcatgcatatcctccttccatctctctataagctgtctataaatgattgtccacaattggtgt |
300 |
Q |
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|||| ||||| ||| | ||||||||||||||| ||||||||||| |||||||||||||||| |||||||| |||||| ||||||||||||| |||| || |
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| T |
16978258 |
atttccaaattggagaatttaaaatcacttcctaaatgcatgcatgtcctccttccatctctttataagctatctatagatgattgtccacagttggagt |
16978357 |
T |
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| Q |
301 |
ccttctccgctagaggtttgccttcaag |
328 |
Q |
| |
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| ||||||| | |||||||||| ||||| |
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| T |
16978358 |
cgttctccgatggaggtttgccatcaag |
16978385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 17029930 - 17030257
Alignment:
| Q |
1 |
gctgtgactctctaacgaccttccctctcaaactgttcccgaatcttgacactctagatgtttataagtgtattaatttcgaaatgatttcacaggaaaa |
100 |
Q |
| |
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|||| ||||||||||| || ||||| || || |||||||| |||||||| ||| || |||||||||||| || ||| |||||||||||||||||||| |
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| T |
17029930 |
gctgcgactctctaacaacattcccgctgaatctgttcccaaatcttgattttctcgacctttataagtgtagtagttttgaaatgatttcacaggaaaa |
17030029 |
T |
|
| Q |
101 |
tgaacatcttaaactcacatctctctcaattgaagagtgtcctaaatttgcatcatttccaaatggaggattgtctgcaccaaggcttcagcagttttat |
200 |
Q |
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||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||| || || ||| || |
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| T |
17030030 |
tgagcatcttaaactcacatctctctcaattggagagtgtcctaaatttgcatcatttccaaaaggaggattgtctacaccaaggctgcaacactttgat |
17030129 |
T |
|
| Q |
201 |
ctttcaaaattagaggagttaaaatcacttcctgaatgcatgcatatcctccttccatctctctataagctgtctataaatgattgtccacaattggtgt |
300 |
Q |
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|||| ||||| ||| | ||||||||||||||| ||||||||||| |||||||||||||||| |||||||| |||||| || |||||||||| |||| || |
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| T |
17030130 |
atttccaaattggagaatttaaaatcacttcctaaatgcatgcatgtcctccttccatctctttataagctatctatagataattgtccacagttggagt |
17030229 |
T |
|
| Q |
301 |
ccttctccgctagaggtttgccttcaag |
328 |
Q |
| |
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| ||||||| | |||||||||| ||||| |
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| T |
17030230 |
cgttctccgatggaggtttgccatcaag |
17030257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 17048268 - 17048595
Alignment:
| Q |
1 |
gctgtgactctctaacgaccttccctctcaaactgttcccgaatcttgacactctagatgtttataagtgtattaatttcgaaatgatttcacaggaaaa |
100 |
Q |
| |
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|||| ||||||||||| || ||||| || || |||||||| |||||||| ||| || |||||||||||| || ||| |||||||||||||||||||| |
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| T |
17048268 |
gctgcgactctctaacaacattcccgctgaatctgttcccaaatcttgattttctcgacctttataagtgtagtagttttgaaatgatttcacaggaaaa |
17048367 |
T |
|
| Q |
101 |
tgaacatcttaaactcacatctctctcaattgaagagtgtcctaaatttgcatcatttccaaatggaggattgtctgcaccaaggcttcagcagttttat |
200 |
Q |
| |
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||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||| || || ||| || |
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| T |
17048368 |
tgagcatcttaaactcacatctctctcaattggagagtgtcctaaatttgcatcatttccaaaaggaggattgtctacaccaaggctgcaacactttgat |
17048467 |
T |
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| Q |
201 |
ctttcaaaattagaggagttaaaatcacttcctgaatgcatgcatatcctccttccatctctctataagctgtctataaatgattgtccacaattggtgt |
300 |
Q |
| |
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|||| ||||| ||| | ||||||||||||||| ||||||||||| |||||||||||||||| |||||||| |||||| || |||||||||| |||| || |
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| T |
17048468 |
atttccaaattggagaatttaaaatcacttcctaaatgcatgcatgtcctccttccatctctttataagctatctatagataattgtccacagttggagt |
17048567 |
T |
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| Q |
301 |
ccttctccgctagaggtttgccttcaag |
328 |
Q |
| |
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| ||||||| | |||||||||| ||||| |
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| T |
17048568 |
cgttctccgatggaggtttgccatcaag |
17048595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 131
Target Start/End: Original strand, 17024324 - 17024395
Alignment:
| Q |
60 |
gtttataagtgtattaatttcgaaatgatttcacaggaaaatgaacatcttaaactcacatctctctcaatt |
131 |
Q |
| |
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|||||||||| || |||||| ||||||| ||| |||||||||||||||||| ||| | || |||||||||| |
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| T |
17024324 |
gtttataagtttaataattttgaaatgaattcctaggaaaatgaacatcttatacttaaatatctctcaatt |
17024395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 219 - 262
Target Start/End: Original strand, 17024488 - 17024531
Alignment:
| Q |
219 |
ttaaaatcacttcctgaatgcatgcatatcctccttccatctct |
262 |
Q |
| |
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| T |
17024488 |
ttaaaatcacttcctaaatgcatgcatatcttctttccatctct |
17024531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 131
Target Start/End: Original strand, 17035086 - 17035157
Alignment:
| Q |
60 |
gtttataagtgtattaatttcgaaatgatttcacaggaaaatgaacatcttaaactcacatctctctcaatt |
131 |
Q |
| |
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|||||||||| || |||||| ||||||| ||| |||||||||||||||||| ||| | || |||||||||| |
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| T |
17035086 |
gtttataagtttaataattttgaaatgaattcctaggaaaatgaacatcttatacttaaatatctctcaatt |
17035157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 219 - 262
Target Start/End: Original strand, 17035250 - 17035293
Alignment:
| Q |
219 |
ttaaaatcacttcctgaatgcatgcatatcctccttccatctct |
262 |
Q |
| |
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||||||||||||||| |||||||||||||| || |||||||||| |
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| T |
17035250 |
ttaaaatcacttcctaaatgcatgcatatcttctttccatctct |
17035293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 131
Target Start/End: Original strand, 17089596 - 17089667
Alignment:
| Q |
60 |
gtttataagtgtattaatttcgaaatgatttcacaggaaaatgaacatcttaaactcacatctctctcaatt |
131 |
Q |
| |
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|||||||||| || |||||| ||||||| ||| |||||||||||||||||| ||| | || |||||||||| |
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| T |
17089596 |
gtttataagtttaataattttgaaatgaattcctaggaaaatgaacatcttatacttaaatatctctcaatt |
17089667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 219 - 262
Target Start/End: Original strand, 17089760 - 17089803
Alignment:
| Q |
219 |
ttaaaatcacttcctgaatgcatgcatatcctccttccatctct |
262 |
Q |
| |
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||||||||||||||| |||||||||||||| || |||||||||| |
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| T |
17089760 |
ttaaaatcacttcctaaatgcatgcatatcttctttccatctct |
17089803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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