View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6968_low_3 (Length: 284)
Name: NF6968_low_3
Description: NF6968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6968_low_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 21 - 284
Target Start/End: Complemental strand, 30183499 - 30183242
Alignment:
| Q |
21 |
ttcataggtttaaatcaattaatttagagtagaatttgttgttgcaaaatataagcaatcaccgacatcaagttcagtagttcactataaatgtactttt |
120 |
Q |
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| T |
30183499 |
ttcataggtttaaatcaattaatttagtgtagaatttgttgttgcaaaatataagcaatcaccgacatcaagttcagtagttcactataaatgtactttt |
30183400 |
T |
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| Q |
121 |
aacgaa----------------ctttgcaatacaggtagttgattcccacttctcacacgcggacttttacttggacaagaggatcattcaagtttgaag |
204 |
Q |
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| T |
30183399 |
aacgaaatgtacttttaacgaactttgcaatac----------------------acacgcggacttttactaggacaagaggatcattcaagtttgaag |
30183322 |
T |
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| Q |
205 |
taacctaatttctttgttgaatggtggttctaacttctaagtaacttggcatgtgatttggctgtttaactaaggtgtga |
284 |
Q |
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| T |
30183321 |
taacctaatttctttgttgaatggtggttctaacttctaagtaacttggcatgtgatttggctgtttaactaaggtgtga |
30183242 |
T |
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