View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6969_high_1 (Length: 411)
Name: NF6969_high_1
Description: NF6969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6969_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 29241062 - 29241456
Alignment:
| Q |
1 |
tgtccgagagtggatggccatctgatggtggagatagtgcgtcaactgataatgcttccacatattatcaaaatttgatcaatcacgtcaagaatgggac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29241062 |
tgtccgagagtggatggccatctgatggtggagatagtgcctcaactgataatgcttccacatattatcaaaatttgatcaatcacgtcaagaatgggac |
29241161 |
T |
|
| Q |
101 |
tcctaagagacccggagctattgagacatacttgtttgccatgtttgatgaaaatcagaagactggtgcagcaactgaacaacattttggtctctttaat |
200 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29241162 |
tcctaagagacccggagcaattgagacatacttgtttgccatgtttgatgaaaatcagaagactggtgcagcaactgaacaacattttggtctctttaat |
29241261 |
T |
|
| Q |
201 |
cctgacaaatcatctaaatatcaaacaagtttcaattgaataaattgataatttaaaaaagatatgcagctaaatatagtttactatgaataattgtgcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29241262 |
cctgacaaatcatctaaatatcaaacaagtttcaattgaataaattgataatttaaaaaagatatgcagctaaatatagtttactatgaataattgtgcc |
29241361 |
T |
|
| Q |
301 |
atgtgtgcacatgttatttccatctttc--nnnnnnnnggacagaatttccatctttctatgtatgtcatgaattaaataaatgaaacatcatat |
393 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29241362 |
atgtgtgcacatgttatttccatctttctttttttttttgacagaatttccatctttctatgtatgtcatgaattaaataaatgaaacatcatat |
29241456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 29225886 - 29226216
Alignment:
| Q |
1 |
tgtccgagagtggatggccatctgatggtggagatagtgcgtcaactgataatgcttccacatattatcaaaatttgatcaatcacgtcaagaatgggac |
100 |
Q |
| |
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|||| |||||||| |||||||||| || |||||||||||| |||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
29225886 |
tgtctgagagtgggtggccatctgctgctggagatagtgcctcaactgacaatgctgccacatattatcgtaatttgatcaatcacgtcaagaatgggac |
29225985 |
T |
|
| Q |
101 |
tcctaagagacccggagctattgagacatacttgtttgccatgtttgatgaaaatcagaagactggtgcagcaactgaacaacattttggtctctttaat |
200 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29225986 |
tcctaagagacccggagcaattgagacttacttgtttgccatgtttgatgaaaatcagaagactggtgcagcaactgaacaacattttggtctctttaat |
29226085 |
T |
|
| Q |
201 |
cctgacaaatcatctaaatatcaaacaagtttcaattgaataaattgataatttaaaaaagatatgc---agctaaatatagtttactatgaataattgt |
297 |
Q |
| |
|
|||||||||||| |||||||||||| ||| |||||||||||||||||||||| ||| || ||||||| |||||||||| ||| |||| ||||||||| |
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| T |
29226086 |
cctgacaaatcacctaaatatcaaataagcttcaattgaataaattgataatctaagaatgatatgcaatagctaaatattgttcactacaaataattgt |
29226185 |
T |
|
| Q |
298 |
gccatgtgtgcacatgttatttccatctttc |
328 |
Q |
| |
|
|||||||||||||| ||| |||||||||||| |
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|
| T |
29226186 |
gccatgtgtgcacaggttgtttccatctttc |
29226216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 29230550 - 29230870
Alignment:
| Q |
1 |
tgtccgagagtggatggccatctgatggtggagatagtgcgtcaactgataatgcttccacatattatcaaaatttgatcaatcacgtcaagaatgggac |
100 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||| ||||| || || ||| |||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
29230550 |
tgtccgagagtgggtggccatctgcaggtggagatagtgcctcaacggacaacgctgccacatattatcgtaatttgatcaatcacgtcaggaatgggac |
29230649 |
T |
|
| Q |
101 |
tcctaagagacccggagctattgagacatacttgtttgccatgtttgatgaaaatcagaagactggtgcagcaactgaacaacattttggtctctttaat |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29230650 |
tcctaagagacccggagctattgagacttacttgtttgccatgtttgatgaaaatcagaagactggtgcagcaactgaacaacattttggtctctttaat |
29230749 |
T |
|
| Q |
201 |
cctgacaaatcatctaaatatcaaacaagtttcaattgaataaattgataatttaaaaaagatatgcagctaa--atatagtttactatgaataattgtg |
298 |
Q |
| |
|
||| ||| | || |||||||||||| ||||||| |||||||||| |||||||| |||| |||||| | ||||||||||| ||||||||||| |
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|
| T |
29230750 |
cctaacagaacacctaaatatcaaataagtttc---------aattgataatctaaaaaagctatgtagctaactaaatagtttactacgaataattgtg |
29230840 |
T |
|
| Q |
299 |
ccatgtgtgcacatgttatttccatctttc |
328 |
Q |
| |
|
|||||||||||||||| |||||||||||| |
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| T |
29230841 |
tcatgtgtgcacatgttgtttccatctttc |
29230870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 29251336 - 29251558
Alignment:
| Q |
1 |
tgtccgagagtggatggccatctgatggtggagatagtgcgtcaactgataatgcttccacatattatcaaaatttgatcaatcacgtcaagaatgggac |
100 |
Q |
| |
|
||||||||||||||||||| ||| | || ||||||||||| |||| ||| |||||| ||||||||||| ||||||||||||||| |||||||||| || |
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|
| T |
29251336 |
tgtccgagagtggatggccgtctaaaggaggagatagtgcctcaattgacaatgctgccacatattattctaatttgatcaatcacatcaagaatggtac |
29251435 |
T |
|
| Q |
101 |
tcctaagagacccggagct---attgagacatacttgtttgccatgtttgatgaaaatcagaagactggtgcagcaactgaacaacattttggtctcttt |
197 |
Q |
| |
|
||||||||| ||||| ||| ||||| || || ||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||| |
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| T |
29251436 |
tcctaagaggcccggtgctgctattgaaacttatttgtttgccatgtttgatgaaaatcagaagactggtgcaacaactgaacaacactatggtctcttt |
29251535 |
T |
|
| Q |
198 |
aatcctgacaaatcatctaaata |
220 |
Q |
| |
|
||||||||||||||| ||||||| |
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|
| T |
29251536 |
aatcctgacaaatcacctaaata |
29251558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 116 - 204
Target Start/End: Complemental strand, 29253133 - 29253045
Alignment:
| Q |
116 |
agctattgagacatacttgtttgccatgtttgatgaaaatcagaagactggtgcagcaactgaacaacattttggtctctttaatcctg |
204 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
29253133 |
agctattgagacttacttgtttgctatgtttgatgaaaatcagaagcctggtgcagcaactgaacaacattttggtctcttcaatcctg |
29253045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 118 - 240
Target Start/End: Original strand, 29218685 - 29218807
Alignment:
| Q |
118 |
ctattgagacatacttgtttgccatgtttgatgaaaatcagaagactggtgcagcaactgaacaacattttggtctctttaatcctgacaaatcatctaa |
217 |
Q |
| |
|
|||||||||| || | ||||| ||||| ||||||||||||||| | ||| | | || ||| | ||| ||||||||||||| || ||||||||| |||| |
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|
| T |
29218685 |
ctattgagacttatctttttgctatgttcgatgaaaatcagaagccgggttctgaaattgagcgacactttggtctctttagacccgacaaatcacctaa |
29218784 |
T |
|
| Q |
218 |
atatcaaacaagtttcaattgaa |
240 |
Q |
| |
|
|||||||| ||||||||||||| |
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|
| T |
29218785 |
atatcaaattagtttcaattgaa |
29218807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 345 - 393
Target Start/End: Original strand, 29230859 - 29230907
Alignment:
| Q |
345 |
tttccatctttctatgtatgtcatgaattaaataaatgaaacatcatat |
393 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||| ||||||| |
|
|
| T |
29230859 |
tttccatctttctatgtctgtaatgaattaaataaatgaaatatcatat |
29230907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 215 - 318
Target Start/End: Original strand, 29251615 - 29251716
Alignment:
| Q |
215 |
taaatatcaaacaagtttcaattgaataaattgataatttaaaaaagatatgcagctaaatatagtttactatgaataattgtgccatgtgtgcacatgt |
314 |
Q |
| |
|
||||||| ||| | |||||||||||| |||||||| ||||||||| ||||| | |||||| ||||| |||||| ||||||||||||||| | ||||| | |
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| T |
29251615 |
taaatatgaaataggtttcaattgaa-aaattgattatttaaaaat-atatgtatctaaatctagttaactatgtataattgtgccatgtattcacattt |
29251712 |
T |
|
| Q |
315 |
tatt |
318 |
Q |
| |
|
|||| |
|
|
| T |
29251713 |
tatt |
29251716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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