View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6969_high_4 (Length: 319)
Name: NF6969_high_4
Description: NF6969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6969_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 304
Target Start/End: Complemental strand, 34653774 - 34653488
Alignment:
| Q |
18 |
aatgcaagggcgcaccgagaactcaatcaagaaccactggaacgccaccaagcgccgccataatactaagagaaagaatcggagtaacagttcaaaggga |
117 |
Q |
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| T |
34653774 |
aatgcaagggcgcaccgagaactcaatcaagaaccactggaacgccaccaagcgccgccataatactaagagaaagaatcggagtaatagttcaaaggga |
34653675 |
T |
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| Q |
118 |
aaactactcttgaaatacataatggaagtcaatgatgctaaggaagctgaaaaggagctgatgacgaattctacgagcgtgatgaaatttgggaatcacc |
217 |
Q |
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| T |
34653674 |
aaactactcttgaaatacataatggaagtcaatgatgctaaggaagctgaaaaggagctgatgacgaattctacgagcgtgatgaaatttgggaatcacc |
34653575 |
T |
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| Q |
218 |
caaactttgaaagctcggagagtgattttagctctgaaggtttggttaatccaaatgaggaaatggatgggtatgctccaatgatgt |
304 |
Q |
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| T |
34653574 |
caaactttgaaagctcggagagtgattttagctctgaaggtttggttaatccaaatgaggaaattgatgggtatgctccaatgatgt |
34653488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 24 - 261
Target Start/End: Complemental strand, 17173999 - 17173762
Alignment:
| Q |
24 |
agggcgcaccgagaactcaatcaagaaccactggaacgccaccaagcgccgccataatactaagagaaagaatcggagtaacagttcaaagggaaaacta |
123 |
Q |
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| T |
17173999 |
agggcgcactgagaactccatcaagaaccactggaatgccactaagcgtcgccaaaatcccaagaggaagaaccgaggtaagagttcaaagggaatactt |
17173900 |
T |
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| Q |
124 |
ctcttgaaatacataatggaagtcaatgatgctaaggaagctgaaaaggagctgatgacgaattctacgagcgtgatgaaatttgggaatcacccaaact |
223 |
Q |
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| T |
17173899 |
cttctgaaatacataatggaagtcaccgatgctaaggaagttgaaaaggagccgatgacgtattctacgagcatgatggatattaaaaatcaactgaatt |
17173800 |
T |
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| Q |
224 |
ttgaaagctcggagagtgattttagctctgaaggtttg |
261 |
Q |
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| T |
17173799 |
ttgaaagctcaaagagtgattttagaactgaaggtttg |
17173762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 25 - 261
Target Start/End: Original strand, 13643758 - 13643994
Alignment:
| Q |
25 |
gggcgcaccgagaactcaatcaagaaccactggaacgccaccaagcgccgccataatactaagagaaagaatcggagtaacagttcaaagggaaaactac |
124 |
Q |
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| T |
13643758 |
gggcgcaccgagaactccgtcaaaaaccattggaacgccactaagcgctgcctgaaagccaagaaaaagaatcgaggtaacagttcaaagggaacactgc |
13643857 |
T |
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| Q |
125 |
tcttgaaatacataatggaagtcaatgatgctaaggaagctgaaaaggagctgatgacgaattctacgagcgtgatgaaatttgggaatcacccaaactt |
224 |
Q |
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| |||||||||||||||||||||| | ||| ||| ||| |||||||||| ||||||| |||||| |||| ||||||| | |||||||| ||||| | |
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| T |
13643858 |
ttttgaaatacataatggaagtcacttgtgccaagaaagttgaaaaggagatgatgactaattctctgagcatgatgaatatcgggaatcagccaaatta |
13643957 |
T |
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| Q |
225 |
tgaaagctcggagagtgattttagctctgaaggtttg |
261 |
Q |
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| T |
13643958 |
tgaaagttctgagagtgattttttctctgaaggtttg |
13643994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 25 - 261
Target Start/End: Original strand, 13706207 - 13706443
Alignment:
| Q |
25 |
gggcgcaccgagaactcaatcaagaaccactggaacgccaccaagcgccgccataatactaagagaaagaatcggagtaacagttcaaagggaaaactac |
124 |
Q |
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||||||||||||||||| |||| |||||||||||| |||| ||||| ||||| || | |||| ||||||||| |||||||||||||||||| ||| | |
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| T |
13706207 |
gggcgcaccgagaactccgtcaaaaaccactggaacaccactaagcgacgccagaaagccaagaaaaagaatcgaggtaacagttcaaagggaacactgc |
13706306 |
T |
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| Q |
125 |
tcttgaaatacataatggaagtcaatgatgctaaggaagctgaaaaggagctgatgacgaattctacgagcgtgatgaaatttgggaatcacccaaactt |
224 |
Q |
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| |||||||||||||||||||| | | ||| ||| ||| |||||||||| |||||| |||||| ||||| ||||||| | |||||||| ||||| | |
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| T |
13706307 |
ttttgaaatacataatggaagttacttctgccaagaaagttgaaaaggagatgatgaataattctccgagcatgatgaatatcgggaatcagccaaatta |
13706406 |
T |
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| Q |
225 |
tgaaagctcggagagtgattttagctctgaaggtttg |
261 |
Q |
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|||||| || |||||||||||| ||||||||||||| |
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| T |
13706407 |
tgaaagttctgagagtgattttttctctgaaggtttg |
13706443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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