View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6969_low_12 (Length: 202)

Name: NF6969_low_12
Description: NF6969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6969_low_12
NF6969_low_12
[»] scaffold0149 (1 HSPs)
scaffold0149 (13-105)||(36777-36869)
[»] chr1 (1 HSPs)
chr1 (13-105)||(32410428-32410520)
[»] chr8 (2 HSPs)
chr8 (16-105)||(24495306-24495395)
chr8 (17-105)||(23450193-23450281)
[»] chr4 (2 HSPs)
chr4 (15-105)||(23844949-23845039)
chr4 (63-105)||(18544653-18544695)
[»] chr2 (3 HSPs)
chr2 (15-105)||(23210854-23210944)
chr2 (15-105)||(23844723-23844813)
chr2 (15-105)||(24431537-24431627)
[»] scaffold0436 (1 HSPs)
scaffold0436 (13-105)||(942-1034)
[»] chr3 (1 HSPs)
chr3 (15-105)||(12056926-12057015)
[»] chr7 (1 HSPs)
chr7 (13-105)||(16478220-16478310)
[»] scaffold0064 (1 HSPs)
scaffold0064 (15-105)||(12254-12344)
[»] scaffold0670 (1 HSPs)
scaffold0670 (63-105)||(5732-5774)


Alignment Details
Target: scaffold0149 (Bit Score: 89; Significance: 4e-43; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 36777 - 36869
Alignment:
Q  13 gcagagaatgaaaatcaaactaatggtgggtgtaagatttagatatgatgtgaatatgacaaaattataagttagacataagtagacgaatat 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  36777 gcagagaatgaaaatcaaactaatggtgggtgtaagatttagatatgatgtgaatatgacaaaattatgagttagacataagtagacgaatat 36869  T

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Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 32410520 - 32410428
Alignment:
Q  13 gcagagaatgaaaatcaaactaatggtgggtgtaagatttagatatgatgtgaatatgacaaaattataagttagacataagtagacgaatat 105  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  32410520 gcagagaatgaaaattaaactaatggtgggtgtaagatttagatatgatgtgaatatgacaaaattatgagttagacataagtagacgaatat 32410428  T

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Target: chr8 (Bit Score: 82; Significance: 6e-39; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 24495395 - 24495306
Alignment:
Q  16 gagaatgaaaatcaaactaatggtgggtgtaagatttagatatgatgtgaatatgacaaaattataagttagacataagtagacgaatat 105  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  24495395 gagaatgaaaatcaaactaatggtgggtgtaagatttaaatatgatgtgaatatgacaaaattatgagttagacataagtagacgaatat 24495306  T

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Target: chr8; HSP #2
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 23450281 - 23450193
Alignment:
Q  17 agaatgaaaatcaaactaatggtgggtgtaagatttagatatgatgtgaatatgacaaaattataagttagacataagtagacgaatat 105  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||    
T  23450281 agaatgaaaattaaactaatggtgggtgtaagatttagatatgacgtgaatatgacaaaattaagagttagacataagtagacgaatat 23450193  T

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Target: chr4 (Bit Score: 79; Significance: 4e-37; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 15 - 105
Target Start/End: Original strand, 23844949 - 23845039
Alignment:
Q  15 agagaatgaaaatcaaactaatggtgggtgtaagatttagatatgatgtgaatatgacaaaattataagttagacataagtagacgaatat 105  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  23844949 agagaatgaaaattaaactaatggtgggtgtaagatttagatatgatgtgaatatgacaaaattatgagttagacataggtagacgaatat 23845039  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 105
Target Start/End: Original strand, 18544653 - 18544695
Alignment:
Q  63 tgaatatgacaaaattataagttagacataagtagacgaatat 105  Q
    |||||||||||||||||| |||||| ||||||||||| |||||    
T  18544653 tgaatatgacaaaattatgagttagtcataagtagacaaatat 18544695  T

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Target: chr2 (Bit Score: 79; Significance: 4e-37; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 15 - 105
Target Start/End: Original strand, 23210854 - 23210944
Alignment:
Q  15 agagaatgaaaatcaaactaatggtgggtgtaagatttagatatgatgtgaatatgacaaaattataagttagacataagtagacgaatat 105  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23210854 agagaatgaaaattaaactaatggtgggtgtaagatttagatgtgatgtgaatatgacaaaattatgagttagacataagtagacgaatat 23210944  T

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Target: chr2; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 23844813 - 23844723
Alignment:
Q  15 agagaatgaaaatcaaactaatggtgggtgtaagatttagatatgatgtgaatatgacaaaattataagttagacataagtagacgaatat 105  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  23844813 agagaatgaaaattaaactaatggtgggtgtaagatttagatatgatgtaaatatgacaaaattatgagttagacataagtagacgaatat 23844723  T

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Target: chr2; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 15 - 105
Target Start/End: Original strand, 24431537 - 24431627
Alignment:
Q  15 agagaatgaaaatcaaactaatggtgggtgtaagatttagatatgatgtgaatatgacaaaattataagttagacataagtagacgaatat 105  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  24431537 agagaatgaaaattaaactaatggtgggtgtaagaattagatatgatgtgaatatgacaaaattatgagttagacataagtagacgaatat 24431627  T

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Target: scaffold0436 (Bit Score: 77; Significance: 6e-36; HSPs: 1)
Name: scaffold0436
Description:

Target: scaffold0436; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 942 - 1034
Alignment:
Q  13 gcagagaatgaaaatcaaactaatggtgggtgtaagatttagatatgatgtgaatatgacaaaattataagttagacataagtagacgaatat 105  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  942 gcagagaatgaaaattaaactaatggtgggtgtaagatttatatatgatgtgaatatgccaaaattatgagttagacataagtagacgaatat 1034  T

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Target: chr3 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 12057015 - 12056926
Alignment:
Q  15 agagaatgaaaatcaaactaatggtgggtgtaagatttagatatgatgtgaatatgacaaaattataagttagacataagtagacgaatat 105  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||    
T  12057015 agagaatgaaaattaaactaatggtgggtgtaagatttagatat-atgtgaatatgacaaaattatgagttagacataagtagacaaatat 12056926  T

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Target: chr7 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 16478310 - 16478220
Alignment:
Q  13 gcagagaatgaaaatcaaactaatggtgggtgtaagatttagatatgatgtgaatatgacaaaattataagttagacataagtagacgaatat 105  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||  |||||| ||||||||||||||||||||||||    
T  16478310 gcagagaatgaaaattgaactaatggtgggtgtaagatttagatatgatgttaatatgac--aattatgagttagacataagtagacgaatat 16478220  T

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Target: scaffold0064 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 15 - 105
Target Start/End: Original strand, 12254 - 12344
Alignment:
Q  15 agagaatgaaaatcaaactaatggtgggtgtaagatttagatatgatgtgaatatgacaaaattataagttagacataagtagacgaatat 105  Q
    ||||||||||||  |||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||    
T  12254 agagaatgaaaactaaactaatggtgggtgaacgatttagatatgatgtgaatatgacaaaattatgagttagaaatgagtagacgaatat 12344  T

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Target: scaffold0670 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0670
Description:

Target: scaffold0670; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 63 - 105
Target Start/End: Complemental strand, 5774 - 5732
Alignment:
Q  63 tgaatatgacaaaattataagttagacataagtagacgaatat 105  Q
    |||| ||||||||||||| ||||||||||||||||||||||||    
T  5774 tgaacatgacaaaattatgagttagacataagtagacgaatat 5732  T

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