View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6969_low_3 (Length: 407)

Name: NF6969_low_3
Description: NF6969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6969_low_3
NF6969_low_3
[»] chr1 (1 HSPs)
chr1 (19-390)||(34900536-34900908)
[»] chr2 (4 HSPs)
chr2 (244-342)||(26894639-26894737)
chr2 (244-342)||(26900078-26900176)
chr2 (244-342)||(4405789-4405887)
chr2 (126-180)||(20023954-20024008)
[»] scaffold0012 (1 HSPs)
scaffold0012 (262-367)||(183182-183286)
[»] chr6 (1 HSPs)
chr6 (244-342)||(9814699-9814797)
[»] chr7 (3 HSPs)
chr7 (292-343)||(29467354-29467405)
chr7 (286-348)||(30944960-30945022)
chr7 (286-342)||(30943933-30943989)


Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 19 - 390
Target Start/End: Complemental strand, 34900908 - 34900536
Alignment:
Q  19 catcaccattagctagaagagaaccacacaaaggcacaaacatttatttaattcacaatc-gttgtatatttgaaaacttataaagtttgtaaaagttgt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  34900908 catcaccattagctagaagagaaccacacaaaggcacaaacatttatttaattcacaatcagttgtatatttgaaaacttataaagtttgtaaaagttgt 34900809  T
Q  118 caattaaataaaaatatttcaaaagaaattccaacgttgtaaggaggtggaatcaaaaataacttttttaaaataaagtgtagaaaaaactcaatttaac 217  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  34900808 caattaaataaaaatatttcaaaagaaattcgaacgttgtaaggaggtggaatcaaaaataacttttttaaaataaagtgtagaaaaaactcaatttagt 34900709  T
Q  218 aatataatcataaccagtgaggcgaaaactagttccatttcatcgatagctcttttctcctaagagctgtcttccccttagtggtggcttcatctaacat 317  Q
    |||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  34900708 aatataatcataacgagtgaggcgagaactagttccatttcattgatagctcttttcttctaagagctgtctttcccttagtggtggcttcatctaacat 34900609  T
Q  318 ataactcttttctctcgattcaaaaacaaaaacataagatatttctcaattaaggagtttacatccctttgat 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  34900608 ataactcttttctctcgattcaaaaacaaaaacataagatatttctcaattaaggagtttacatctctttgat 34900536  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 244 - 342
Target Start/End: Original strand, 26894639 - 26894737
Alignment:
Q  244 aactagttccatttcatcgatagctcttttctcctaagagctgtcttccccttagtggtggcttcatctaacatataactcttttctctcgattcaaaa 342  Q
    |||||| ||||| || | ||||||||||| || |||||||  | ||| | ||||||||| ||||||||||||| |||||||||||||||||| ||||||    
T  26894639 aactagctccatctcgttgatagctctttcctgctaagagtggcctttctcttagtggtagcttcatctaacagataactcttttctctcgactcaaaa 26894737  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 244 - 342
Target Start/End: Original strand, 26900078 - 26900176
Alignment:
Q  244 aactagttccatttcatcgatagctcttttctcctaagagctgtcttccccttagtggtggcttcatctaacatataactcttttctctcgattcaaaa 342  Q
    |||||| ||||| || | ||||||||||| || |||||||  | ||| | ||||||||| ||||||||||||| |||||||||||||||||| ||||||    
T  26900078 aactagctccatctcgttgatagctctttcctgctaagagtggcctttctcttagtggtagcttcatctaacagataactcttttctctcgactcaaaa 26900176  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 244 - 342
Target Start/End: Complemental strand, 4405887 - 4405789
Alignment:
Q  244 aactagttccatttcatcgatagctcttttctcctaagagctgtcttccccttagtggtggcttcatctaacatataactcttttctctcgattcaaaa 342  Q
    |||||| ||||| || | ||||||||||| || |||||||  | ||| ||||||||||| ||||||||||||  ||| |||||||||||||| ||||||    
T  4405887 aactagctccatctcgttgatagctctttcctactaagagtggcctttcccttagtggtagcttcatctaacggatagctcttttctctcgactcaaaa 4405789  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 20023954 - 20024008
Alignment:
Q  126 taaaaatatttcaaaagaaattccaacgttgtaaggaggtggaatcaaaaataac 180  Q
    |||||||||||||||||||| || |||||||||| ||| |||||||| |||||||    
T  20023954 taaaaatatttcaaaagaaaatcaaacgttgtaaagagatggaatcagaaataac 20024008  T

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Target: scaffold0012 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 262 - 367
Target Start/End: Original strand, 183182 - 183286
Alignment:
Q  262 gatagctcttttctcctaagagctgtcttccccttagtggtggcttcatctaacatataactcttttctctcgattcaaaaacaaaaacataagatattt 361  Q
    ||||||||||||||||||||||    ||| || |||||||| ||| || |||||| |||||||||||||||||| || ||||||||||| ||| ||||||    
T  183182 gatagctcttttctcctaagagtgacctttcctttagtggtagctccacctaacaaataactcttttctctcgactc-aaaacaaaaacgtaaaatattt 183280  T
Q  362 ctcaat 367  Q
     |||||    
T  183281 ttcaat 183286  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 342
Target Start/End: Complemental strand, 9814797 - 9814699
Alignment:
Q  244 aactagttccatttcatcgatagctcttttctcctaagagctgtcttccccttagtggtggcttcatctaacatataactcttttctctcgattcaaaa 342  Q
    |||||| ||||| || | ||||||||||| || |||||||  | ||| | ||||||||| ||||||||||||  ||| |||||||||||||| ||||||    
T  9814797 aactagctccatctcgttgatagctctttcctactaagagtggcctttctcttagtggtagcttcatctaacggatagctcttttctctcgactcaaaa 9814699  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 292 - 343
Target Start/End: Original strand, 29467354 - 29467405
Alignment:
Q  292 cccttagtggtggcttcatctaacatataactcttttctctcgattcaaaaa 343  Q
    ||||||||||| | ||||||||||| ||| |||||||||||||| |||||||    
T  29467354 cccttagtggtagattcatctaacagatatctcttttctctcgactcaaaaa 29467405  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 348
Target Start/End: Complemental strand, 30945022 - 30944960
Alignment:
Q  286 gtcttccccttagtggtggcttcatctaacatataactcttttctctcgattcaaaaacaaaa 348  Q
    ||||| ||||||||||| ||| ||||||||| ||| |||||||||||||| | ||||| ||||    
T  30945022 gtctttcccttagtggtagctccatctaacagatagctcttttctctcgactaaaaaaaaaaa 30944960  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 342
Target Start/End: Complemental strand, 30943989 - 30943933
Alignment:
Q  286 gtcttccccttagtggtggcttcatctaacatataactcttttctctcgattcaaaa 342  Q
    ||||| ||||||||||| ||| ||||||||  ||| |||||||||||||| ||||||    
T  30943989 gtctttcccttagtggtagctccatctaacggatagctcttttctctcgactcaaaa 30943933  T

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