View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6969_low_5 (Length: 357)
Name: NF6969_low_5
Description: NF6969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6969_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 17 - 348
Target Start/End: Complemental strand, 2819719 - 2819388
Alignment:
| Q |
17 |
acatcatagaaatttggtttccctttatcaccttgaagtgtgatctcaactaatgtagctggaggtgttccaatgagtccattgcaagctaatcttccat |
116 |
Q |
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| T |
2819719 |
acatcatagaaatttggtctccctttatcaccttgaagtgtgatttcaactaatgtagctggaggtgttccaatgagtccattgcaagctaatcttccat |
2819620 |
T |
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| Q |
117 |
cacaatccccagtttcacaagatggtttccaattatttgaagcaaaattgcaacctgttctagcccaaattctaccactccatgaccatggtgctagaat |
216 |
Q |
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| T |
2819619 |
cacaatccccagtttcacaagatggtttccaattatttgaagcaaaattgcaacctgttctagcccaaattctaccactccatgaccatggtgctagaat |
2819520 |
T |
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| Q |
217 |
tttctttgtttggcctgaaggaaggtagaatccaccatctgctataattggttgaccagtgtttggtgctgttgctggccatattggaaagggacattta |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2819519 |
tttctttgtttggcctgaaggaaggtagaatccaccatctgctataattggttgaccagtgtttggtgctgttgcaggccatattggaaagggacattta |
2819420 |
T |
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| Q |
317 |
ttgtgtatatagaatgttgcttgatgtccatc |
348 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
2819419 |
ttgtgtatatagaatgttgcttgatgtccatc |
2819388 |
T |
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