View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6970_high_5 (Length: 294)
Name: NF6970_high_5
Description: NF6970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6970_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 266
Target Start/End: Original strand, 8203863 - 8204112
Alignment:
| Q |
18 |
acaatcgaggttattgctcagagtattgggattaacaatttatctcctgatgttgcgctttctgttgctcctgatgttgaataccgtatgcgccagatca |
117 |
Q |
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| T |
8203863 |
acaatcgaggttattgctcagagtattgggattaacaatttatctcctgatgttgcgctttctgttgctcctgatgttgaataccgtatgcgccagatca |
8203962 |
T |
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| Q |
118 |
tgcaggttaggtttcttcattttatgaagtaaaaattgaacagnnnnnnngtgatttcgtgttctgttgaaaatttaagattattttctcctgcactttt |
217 |
Q |
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| T |
8203963 |
tgcaggttaggtttcttcattttatgaagtaaaaattgaacagaaaaaaagtgatttcgtgttctgttgaaaatttaagattattttctcctgcactttt |
8204062 |
T |
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| Q |
218 |
tgttcttgttcgaattac-gtgttaggataatagttagttagtaagactg |
266 |
Q |
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| T |
8204063 |
tgctcttgttcgaatcacggtgttaggagaatagttagttagtgagactg |
8204112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 266
Target Start/End: Original strand, 8216340 - 8216589
Alignment:
| Q |
18 |
acaatcgaggttattgctcagagtattgggattaacaatttatctcctgatgttgcgctttctgttgctcctgatgttgaataccgtatgcgccagatca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8216340 |
acaatcgaggttattgctcagagtattgggattaacaatttatctcctgatgttgcgctttctgttgctcctgatgttgaataccgtatgcgccagatca |
8216439 |
T |
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| Q |
118 |
tgcaggttaggtttcttcattttatgaagtaaaaattgaacagnnnnnnngtgatttcgtgttctgttgaaaatttaagattattttctcctgcactttt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8216440 |
tgcaggttaggtttcttcattttatgaagtaaaaattgaacagaaaaaaagtgatttcgtgttctgttgaaaatttaagattattttctcctgcactttt |
8216539 |
T |
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| Q |
218 |
tgttcttgttcgaattac-gtgttaggataatagttagttagtaagactg |
266 |
Q |
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|| |||||||||||| || ||||||||| |||||||||||||| |||||| |
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| T |
8216540 |
tgctcttgttcgaatcacggtgttaggagaatagttagttagtgagactg |
8216589 |
T |
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