View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6970_low_2 (Length: 362)
Name: NF6970_low_2
Description: NF6970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6970_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 2493062 - 2492953
Alignment:
| Q |
18 |
cattttagatatcactgtgaagccacggttgaacgttgatttacgcgttgaaacaacgtcgtctccgtcgacgtggtgacaggaagtcgcgaagagaaag |
117 |
Q |
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| T |
2493062 |
cattttagatatcactgtgaagccacggttgaacgttgatttacgcgttgaaacaacgtcgtctccgtcgacgtggtgacaggaagtcgcgaagagaaag |
2492963 |
T |
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| Q |
118 |
ggtcgacggt |
127 |
Q |
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|||||||||| |
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| T |
2492962 |
ggtcgacggt |
2492953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 215 - 345
Target Start/End: Complemental strand, 2492865 - 2492729
Alignment:
| Q |
215 |
agggttgagatgaaattgttgatgctgccatggaaggaagaagaa---cagcaacaac---aacagagtaacgatgaaatcgttgttgtgtatgaaaagg |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2492865 |
agggttgagatgaaattgttgatgctgccatggaaggaagaagaagaacaacaacaacaacaacagagtaacgatgaaatcgttgttgtgtatgaaaagg |
2492766 |
T |
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| Q |
309 |
aacaagaaccttagcctttaccttagcttatgttttt |
345 |
Q |
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| T |
2492765 |
aacaagaaccttagcctttaccttagcttatgttttt |
2492729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 27095649 - 27095540
Alignment:
| Q |
18 |
cattttagatatcactgtgaagccacggttgaacgttgatttacgcgttgaaacaacgtcgtctccgtcgacgtggtgacaggaagtcgcgaagagaaag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27095649 |
cattttagatatcactgtgaagccacggttgaacgttgatttacgcgttgaaacaacgtcgtctccgtcgacgtggtgacaggaagtcgcgaagagaaag |
27095550 |
T |
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| Q |
118 |
ggtcgacggt |
127 |
Q |
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|||||||||| |
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| T |
27095549 |
ggtcgacggt |
27095540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 215 - 345
Target Start/End: Complemental strand, 27095452 - 27095316
Alignment:
| Q |
215 |
agggttgagatgaaattgttgatgctgccatggaaggaagaagaa---cagcaacaac---aacagagtaacgatgaaatcgttgttgtgtatgaaaagg |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
27095452 |
agggttgagatgaaattgttgatgctgccatggaaggaagaagaagaacaacaacaacaacaacagagtaacgatgaaatcgttgttgtgtatgaaaagg |
27095353 |
T |
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| Q |
309 |
aacaagaaccttagcctttaccttagcttatgttttt |
345 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
27095352 |
aacaagaaccttagcctttaccttagcttatgttttt |
27095316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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