View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6970_low_4 (Length: 326)
Name: NF6970_low_4
Description: NF6970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6970_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 46642279 - 46642016
Alignment:
| Q |
1 |
agaaatattggaagttagtgtttgttgtgctgcaaattgacattactcttataaaataataatgtaattggtttggttagacatttaaatggtgtgacat |
100 |
Q |
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| T |
46642279 |
agaaatattggaagttagtgtttgttgtgctgcaaattgacgttactcttataaaataataatgtaattggtttggttagacgtttaaatggtgtgacat |
46642180 |
T |
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| Q |
101 |
ataggttatccataaaagaatggtaggtaattaatcttaacaaatgaaaatattcacatttttaggtggtatccttcatggatttcgtgcatgtggattt |
200 |
Q |
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| T |
46642179 |
ctaggttacctataaaagaatagtaggtaatttatactaacgaat--aaatattcacatttttaagtggtatccttcatggatttcgtgcatgtggattt |
46642082 |
T |
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| Q |
201 |
cctccggtggaaatctctcccatcttctgcagtgacataatttgcaccattaattttcttctctct |
266 |
Q |
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| T |
46642081 |
ccttcggtggaaatctctccaatcctctgcagtgacataatttacaccattaattatcttctctct |
46642016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 46639984 - 46639893
Alignment:
| Q |
1 |
agaaatattggaagttagtgtttgttgtgctgcaaattgacattactcttataaaataataat---gtaattggtttggttagacatttaaa |
89 |
Q |
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| T |
46639984 |
agaaattttggaagtttctgtttgttgtgctgcaaattgacattactcttataaaataataatagagtgattggtttggttagacatttaaa |
46639893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 194 - 286
Target Start/End: Complemental strand, 29966171 - 29966078
Alignment:
| Q |
194 |
tggatttcctccggtggaaatctctcccatcttctgcagtgacataatttgcaccattaattttcttctctctcatttt-aacatttaaaattc |
286 |
Q |
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| T |
29966171 |
tggatttcctcctgtgaaaatctctccagttttctgcagtgatacaatctgcaccattaattgtcttctcttttattttcaacatttaaaattc |
29966078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 194 - 286
Target Start/End: Original strand, 30008627 - 30008720
Alignment:
| Q |
194 |
tggatttcctccggtggaaatctctcccatcttctgcagtgacataatttgcaccattaattttcttctctctcatttt-aacatttaaaattc |
286 |
Q |
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| T |
30008627 |
tggatttcctcctgtgaaaatctctccagttttctgcagtgatacaatctgcaccattaattgtcttctcttttattttcaacatttaaaattc |
30008720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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