View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6970_low_5 (Length: 311)
Name: NF6970_low_5
Description: NF6970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6970_low_5 |
 | |
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| [»] chr5 (16 HSPs) |
| |
|
| [»] scaffold0131 (1 HSPs) |
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| [»] scaffold1469 (1 HSPs) |
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| [»] chr7 (8 HSPs) |
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| [»] scaffold0029 (2 HSPs) |
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| [»] chr6 (7 HSPs) |
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| [»] chr3 (5 HSPs) |
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| [»] scaffold0053 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (4 HSPs) |
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| [»] scaffold0072 (1 HSPs) |
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| [»] scaffold0384 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0348 (1 HSPs) |
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| [»] scaffold0023 (1 HSPs) |
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| [»] scaffold1318 (1 HSPs) |
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| [»] scaffold0099 (1 HSPs) |
| | |
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| [»] scaffold0609 (1 HSPs) |
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| [»] scaffold0815 (1 HSPs) |
| | |
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| [»] scaffold0553 (1 HSPs) |
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| [»] scaffold0544 (1 HSPs) |
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| [»] scaffold0249 (1 HSPs) |
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| [»] scaffold0183 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 16)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 311
Target Start/End: Complemental strand, 28909595 - 28909289
Alignment:
| Q |
8 |
gacatcaacaggaacaacaactag-cattaacaacaacaattcagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttc |
106 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||| ||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
28909595 |
gacatcaacaggaacaacaactaaacattaacaacaacaatccagcccaatcaggcattcatacagaaaatcccaaattcatacataacatgctcttttc |
28909496 |
T |
|
| Q |
107 |
atccaattatgatctacaatagcaatacagactaggaaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaatca |
206 |
Q |
| |
|
|||||||||||||| |||| ||| ||||||| |||||||||||||||||||| ||||||||| | |||||||||||| |||||||||||||||||||||| |
|
|
| T |
28909495 |
atccaattatgatcaacaacagcgatacagattaggaaatcatactaatcattaaatacaacgtcataaacctgaattttacgcattttcttcaaaatca |
28909396 |
T |
|
| Q |
207 |
tcattaaccctaattttcccaa-ttttaccataagaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccaccctt |
304 |
Q |
| |
|
|||| || |||||||||||||| ||||||| |||||||| |||||| | ||||||||||||||||||| ||||| ||||| ||||||||||||||||| |
|
|
| T |
28909395 |
tcatcaaacctaattttcccaatttttaccttaagaacaattaaatagtttaattttcagaaatcatataatatcactattgaaagatgatcccaccctt |
28909296 |
T |
|
| Q |
305 |
accttag |
311 |
Q |
| |
|
||||||| |
|
|
| T |
28909295 |
accttag |
28909289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 311
Target Start/End: Complemental strand, 28945990 - 28945684
Alignment:
| Q |
8 |
gacatcaacaggaacaacaactag-cattaacaacaacaattcagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttc |
106 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||| ||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
28945990 |
gacatcaacaggaacaacaactaaacattaacaacaacaatccagcccaatcaggcattcatacagaaaatcccaaattcatacataacatgctcttttc |
28945891 |
T |
|
| Q |
107 |
atccaattatgatctacaatagcaatacagactaggaaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaatca |
206 |
Q |
| |
|
|||||||||||||| |||| ||| ||||||| |||||||||||||||||||| ||||||||| | |||||||||||| |||||||||||||||||||||| |
|
|
| T |
28945890 |
atccaattatgatcaacaacagcgatacagattaggaaatcatactaatcattaaatacaacgtcataaacctgaattttacgcattttcttcaaaatca |
28945791 |
T |
|
| Q |
207 |
tcattaaccctaattttcccaa-ttttaccataagaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccaccctt |
304 |
Q |
| |
|
|||| || |||||||||||||| ||||||| |||||||| |||||| | ||||||||||||||||||| ||||| ||||| ||||||||||||||||| |
|
|
| T |
28945790 |
tcatcaaacctaattttcccaatttttaccttaagaacaattaaatagtttaattttcagaaatcatataatatcactattgaaagatgatcccaccctt |
28945691 |
T |
|
| Q |
305 |
accttag |
311 |
Q |
| |
|
||||||| |
|
|
| T |
28945690 |
accttag |
28945684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 8 - 311
Target Start/End: Complemental strand, 28889643 - 28889337
Alignment:
| Q |
8 |
gacatcaacaggaacaacaactag-cattaacaacaacaattcagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttc |
106 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||||| ||||||||||| ||||||||| ||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
28889643 |
gacatcaacaggaacagcaactaaacattaacaacaacaatccagcccaatcaggcattcatacagaaaatcccaaattcatacataacatgctcttttc |
28889544 |
T |
|
| Q |
107 |
atccaattatgatctacaatagcaatacagactaggaaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaatca |
206 |
Q |
| |
|
|||||||||||||| |||| ||| ||||||| |||||||||||||||||||| ||||||||| | |||||||||||| |||||||||||||||||||||| |
|
|
| T |
28889543 |
atccaattatgatcaacaacagcgatacagattaggaaatcatactaatcattaaatacaacgtcataaacctgaattttacgcattttcttcaaaatca |
28889444 |
T |
|
| Q |
207 |
tcattaaccctaattttcccaa-ttttaccataagaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccaccctt |
304 |
Q |
| |
|
|||| || |||||||||||||| ||||||| |||||||| |||||| | ||||||||||||||||||| ||||| ||||| ||||||||||||||||| |
|
|
| T |
28889443 |
tcatcaaacctaattttcccaatttttaccttaagaacaattaaatagtttaattttcagaaatcatataatatcactattgaaagatgatcccaccctt |
28889344 |
T |
|
| Q |
305 |
accttag |
311 |
Q |
| |
|
||||||| |
|
|
| T |
28889343 |
accttag |
28889337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 8 - 311
Target Start/End: Complemental strand, 28896347 - 28896041
Alignment:
| Q |
8 |
gacatcaacaggaacaacaactag-cattaacaacaacaattcagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttc |
106 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||||| ||||||||||| ||||||||| ||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
28896347 |
gacatcaacaggaacagcaactaaacattaacaacaacaatccagcccaatcaggcattcatacagaaaatcccaaattcatacataacatgctcttttc |
28896248 |
T |
|
| Q |
107 |
atccaattatgatctacaatagcaatacagactaggaaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaatca |
206 |
Q |
| |
|
|||||||||||||| |||| ||| ||||||| |||||||||||||||||||| ||||||||| | |||||||||||| |||||||||||||||||||||| |
|
|
| T |
28896247 |
atccaattatgatcaacaacagcgatacagattaggaaatcatactaatcattaaatacaacgtcataaacctgaattttacgcattttcttcaaaatca |
28896148 |
T |
|
| Q |
207 |
tcattaaccctaattttcccaa-ttttaccataagaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccaccctt |
304 |
Q |
| |
|
|||| || |||||||||||||| ||||||| |||||||| |||||| | ||||||||||||||||||| ||||| ||||| ||||||||||||||||| |
|
|
| T |
28896147 |
tcatcaaacctaattttcccaatttttaccttaagaacaattaaatagtttaattttcagaaatcatataatatcactattgaaagatgatcccaccctt |
28896048 |
T |
|
| Q |
305 |
accttag |
311 |
Q |
| |
|
||||||| |
|
|
| T |
28896047 |
accttag |
28896041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 8 - 311
Target Start/End: Complemental strand, 28925173 - 28924867
Alignment:
| Q |
8 |
gacatcaacaggaacaacaactag-cattaacaacaacaattcagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttc |
106 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||||| ||||||||||| ||||||||| ||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
28925173 |
gacatcaacaggaacagcaactaaacattaacaacaacaatccagcccaatcaggcattcatacagaaaatcccaaattcatacataacatgctcttttc |
28925074 |
T |
|
| Q |
107 |
atccaattatgatctacaatagcaatacagactaggaaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaatca |
206 |
Q |
| |
|
|||||||||||||| |||| ||| ||||||| |||||||||||||||||||| ||||||||| | |||||||||||| |||||||||||||||||||||| |
|
|
| T |
28925073 |
atccaattatgatcaacaacagcgatacagattaggaaatcatactaatcattaaatacaacgtcataaacctgaattttacgcattttcttcaaaatca |
28924974 |
T |
|
| Q |
207 |
tcattaaccctaattttcccaa-ttttaccataagaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccaccctt |
304 |
Q |
| |
|
|||| || |||||||||||||| ||||||| |||||||| |||||| | ||||||||||||||||||| ||||| ||||| ||||||||||||||||| |
|
|
| T |
28924973 |
tcatcaaacctaattttcccaatttttaccttaagaacaattaaatagtttaattttcagaaatcatataatatcactattgaaagatgatcccaccctt |
28924874 |
T |
|
| Q |
305 |
accttag |
311 |
Q |
| |
|
||||||| |
|
|
| T |
28924873 |
accttag |
28924867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 8 - 311
Target Start/End: Original strand, 20819968 - 20820271
Alignment:
| Q |
8 |
gacatcaacaggaacaacaactag-cattaacaacaacaattcagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttc |
106 |
Q |
| |
|
|||||||||||||||| |||||| ||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |
|
|
| T |
20819968 |
gacatcaacaggaacagcaactaaacataaacaacaacaatttagcccaatcaagcattcatacagaaaattccaaattcatacataacatgctatttgc |
20820067 |
T |
|
| Q |
107 |
atccaattatgatctacaatagcaatacagactaggaaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaatca |
206 |
Q |
| |
|
|||||||||||||| || | | |||||| | |||| |||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
20820068 |
atccaattatgatcaactacaacaatactaattagg-gatcatactcatcatcaaatacaacattataaacctgaatcttatgcattctcttcaaaatca |
20820166 |
T |
|
| Q |
207 |
tcattaaccctaattttcccaattttaccataagaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccaccctta |
305 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||| ||| ||||||| ||| |||||||| |||||||| || ||||| |||||||||||||||||| |
|
|
| T |
20820167 |
tcattaaccctaatttt-ccaattttaccttaagaacggttgaattacttaatcatcagaaattatatattaacactattgaaagatgatcccaccctta |
20820265 |
T |
|
| Q |
306 |
ccttag |
311 |
Q |
| |
|
|||||| |
|
|
| T |
20820266 |
ccttag |
20820271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 8 - 311
Target Start/End: Original strand, 20827068 - 20827371
Alignment:
| Q |
8 |
gacatcaacaggaacaacaactag-cattaacaacaacaattcagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttc |
106 |
Q |
| |
|
|||||||||||||||| |||||| ||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |
|
|
| T |
20827068 |
gacatcaacaggaacagcaactaaacataaacaacaacaatttagcccaatcaagcattcatacagaaaattccaaattcatacataacatgctatttgc |
20827167 |
T |
|
| Q |
107 |
atccaattatgatctacaatagcaatacagactaggaaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaatca |
206 |
Q |
| |
|
|||||||||||||| || | | |||||| | |||| |||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
20827168 |
atccaattatgatcaactacaacaatactaattagg-gatcatactcatcatcaaatacaacattataaacctgaatcttatgcattctcttcaaaatca |
20827266 |
T |
|
| Q |
207 |
tcattaaccctaattttcccaattttaccataagaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccaccctta |
305 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||| ||| ||||||| ||| |||||||| |||||||| || ||||| |||||||||||||||||| |
|
|
| T |
20827267 |
tcattaaccctaatttt-ccaattttaccttaagaacggttgaattacttaatcatcagaaattatatattaacactattgaaagatgatcccaccctta |
20827365 |
T |
|
| Q |
306 |
ccttag |
311 |
Q |
| |
|
|||||| |
|
|
| T |
20827366 |
ccttag |
20827371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 8 - 311
Target Start/End: Original strand, 20772718 - 20773024
Alignment:
| Q |
8 |
gacatcaacaggaacaacaact-agcattaacaacaacaattcagcccaatcaagcattcatatagaaaattccaaa--ttcatacataacatgctattt |
104 |
Q |
| |
|
|||||||| || |||||||| | | ||| ||||||||||||| | |||||||| ||||||| |||| ||||||| ||||| ||| | || ||| || |
|
|
| T |
20772718 |
gacatcaaaagaaacaacaattcaacatcaacaacaacaattaactccaatcaaacattcattcagaac-ttccaaaacttcatccattatattctactt |
20772816 |
T |
|
| Q |
105 |
tcatccaattatgatctacaatagcaatacagactaggaaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaat |
204 |
Q |
| |
|
|||||||||||||||| ||| | ||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
20772817 |
tcatccaattatgatcaacatcaacaatatagagtaggaaatcatactaatcatcaaatacaacattataaacctgattcttacacattttcttcaaaat |
20772916 |
T |
|
| Q |
205 |
catcattaaccctaattttcccaattttaccataagaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccaccct |
303 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||| | ||||| ||||| |||||||||| |
|
|
| T |
20772917 |
catcattaaccctaaatttcccaattttaccttaagaacagttaaattgattaattttcagaaatcatatattataactattgaaagataatcccaccct |
20773016 |
T |
|
| Q |
304 |
taccttag |
311 |
Q |
| |
|
|||||||| |
|
|
| T |
20773017 |
taccttag |
20773024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 8 - 311
Target Start/End: Original strand, 20781493 - 20781799
Alignment:
| Q |
8 |
gacatcaacaggaacaacaact-agcattaacaacaacaattcagcccaatcaagcattcatatagaaaattccaaa--ttcatacataacatgctattt |
104 |
Q |
| |
|
|||||||| || |||||||| | | ||| ||||||||||||| | |||||||| ||||||| |||| ||||||| ||||| ||| | || ||| || |
|
|
| T |
20781493 |
gacatcaaaagaaacaacaattcaacatcaacaacaacaattaactccaatcaaacattcattcagaac-ttccaaaacttcatccattatattctactt |
20781591 |
T |
|
| Q |
105 |
tcatccaattatgatctacaatagcaatacagactaggaaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaat |
204 |
Q |
| |
|
|||||||||||||||| ||| | ||||| ||| |||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
20781592 |
tcatccaattatgatcaacatcaacaatatagagtaggaaatcataataatcatcaaatacaacattataaacctgattcttacacattttcttcaaaat |
20781691 |
T |
|
| Q |
205 |
catcattaaccctaattttcccaattttaccataagaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccaccct |
303 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||| ||||||| ||||| |||||||||| |
|
|
| T |
20781692 |
catcattaaccctaaatttcccaattttaccttaagaacagttaaattgattaattttcagaaatcatatattataattattgaaagataatcccaccct |
20781791 |
T |
|
| Q |
304 |
taccttag |
311 |
Q |
| |
|
|||||||| |
|
|
| T |
20781792 |
taccttag |
20781799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 8 - 232
Target Start/End: Complemental strand, 28931287 - 28931061
Alignment:
| Q |
8 |
gacatcaacaggaacaacaactag-cattaacaacaacaattcagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttc |
106 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||||| ||||||||||| ||||||||| ||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
28931287 |
gacatcaacaggaacagcaactaaacattaacaacaacaatccagcccaatcaggcattcatacagaaaatcccaaattcatacataacatgctcttttc |
28931188 |
T |
|
| Q |
107 |
atccaattatgatctacaatagcaatacagactaggaaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttc-aaaatc |
205 |
Q |
| |
|
|||||||||||||| |||| ||| ||||||| |||||||||||||||||||| ||||||||| | |||||||||||| |||| |||||||||| |||| | |
|
|
| T |
28931187 |
atccaattatgatcaacaacagcgatacagattaggaaatcatactaatcattaaatacaacgtcataaacctgaattttacccattttcttcaaaaacc |
28931088 |
T |
|
| Q |
206 |
atcattaaccctaattttcccaatttt |
232 |
Q |
| |
|
||||| || |||||||||||||||||| |
|
|
| T |
28931087 |
atcatcaaacctaattttcccaatttt |
28931061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 139 - 311
Target Start/End: Complemental strand, 24930102 - 24929928
Alignment:
| Q |
139 |
taggaaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaatcatcattaaccctaattttcccaattttaccata |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||| |||||||||||||||||| ||||||||||||||| || |
|
|
| T |
24930102 |
taggaaatcatactaatcatcaaatacaacattataaacctgattcttacacatttccttcagaatcatcattaaccctaaatttcccaattttacctta |
24930003 |
T |
|
| Q |
239 |
agaacagttaaatt-actcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttag |
311 |
Q |
| |
|
|||||||||||||| | | | |||| ||||||||||||||| | ||||| ||||| |||||||||||||||||| |
|
|
| T |
24930002 |
agaacagttaaattgattaattttttagaaatcatatattagaactattgaaagataatcccacccttaccttag |
24929928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 163 - 311
Target Start/End: Original strand, 19236805 - 19236955
Alignment:
| Q |
163 |
tacaacattataaacctgaatcttacgcattttctt-caaaatcatcattaaccctaattttcccaattttaccataagaacagttaaattactcaattt |
261 |
Q |
| |
|
||||||| ||||||||||| |||| | ||||||| |||||||||| |||||||||| ||||||||||||||| ||||||||||| |||| | ||||| |
|
|
| T |
19236805 |
tacaacaatataaacctgatccttataccttttctttcaaaatcatccttaaccctaaatttcccaattttaccttaagaacagttcaattgattaattt |
19236904 |
T |
|
| Q |
262 |
tcagaaatcatatattatcattattg-aagatgatcccacccttaccttag |
311 |
Q |
| |
|
|||||||| ||||||||| | ||||| ||||| |||||||||||||||||| |
|
|
| T |
19236905 |
tcagaaattatatattatgactattgaaagataatcccacccttaccttag |
19236955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 142 - 311
Target Start/End: Original strand, 22461039 - 22461211
Alignment:
| Q |
142 |
gaaatcatactaatcatcaaa-tacaacattataaacctgaatcttacgcattttcttcaaaatcatcattaaccctaattttcccaattttaccataag |
240 |
Q |
| |
|
|||| |||||||| ||||||| ||| ||| ||||||||||| |||| | ||||||| |||||||| |||||||||| ||||||||||||||| |||| |
|
|
| T |
22461039 |
gaaaacatactaaacatcaaagtacgacaatataaacctgatccttataccttttctttcaaatcatccttaaccctaaatttcccaattttaccttaag |
22461138 |
T |
|
| Q |
241 |
aacagttaaatt-actcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttag |
311 |
Q |
| |
|
||||||| |||| | | | ||||||||||| ||||||||| | ||||| ||||| |||||||||||||||||| |
|
|
| T |
22461139 |
aacagttcaattgattaatttttcagaaattatatattatgactattgaaagataatcccacccttaccttag |
22461211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 142 - 311
Target Start/End: Original strand, 22467663 - 22467835
Alignment:
| Q |
142 |
gaaatcatactaatcatcaaa-tacaacattataaacctgaatcttacgcattttcttcaaaatcatcattaaccctaattttcccaattttaccataag |
240 |
Q |
| |
|
|||| |||||||| ||||||| ||| ||| ||||||||||| |||| | ||||||| |||||||| |||||||||| ||||||||||||||| |||| |
|
|
| T |
22467663 |
gaaaacatactaaacatcaaagtacgacaatataaacctgatccttataccttttctttcaaatcatccttaaccctaaatttcccaattttaccttaag |
22467762 |
T |
|
| Q |
241 |
aacagttaaatt-actcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttag |
311 |
Q |
| |
|
||||||| |||| | | | ||||||||||| ||||||||| | ||||| ||||| |||||||||||||||||| |
|
|
| T |
22467763 |
aacagttcaattgattaatttttcagaaattatatattatgactattgaaagataatcccacccttaccttag |
22467835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 310
Target Start/End: Complemental strand, 18408000 - 18407944
Alignment:
| Q |
255 |
tcaattttcagaaatcatatattatcattattga-agatgatcccacccttacctta |
310 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||| |||| || ||||||||||||| |
|
|
| T |
18408000 |
tcaattttcagaaattatatattatgattattgagagatagtctcacccttacctta |
18407944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 311
Target Start/End: Original strand, 42961566 - 42961622
Alignment:
| Q |
256 |
caattttcagaaatcatatattatcattattgaagatgatcc-cacccttaccttag |
311 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||| | | || |||||||||||||| |
|
|
| T |
42961566 |
caattttcagaaatcatatattataatcattgaaggttagcctcacccttaccttag |
42961622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0131 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: scaffold0131
Description:
Target: scaffold0131; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 8 - 311
Target Start/End: Original strand, 747 - 1052
Alignment:
| Q |
8 |
gacatcaacaggaacaacaactag-cattaacaacaacaattcagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttc |
106 |
Q |
| |
|
|||||||||||||||| |||||| ||| |||||||||||| ||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
747 |
gacatcaacaggaacagcaactaaacataaacaacaacaatccagcccaatcaagcattaatacagaaaatcccaaattcatacataacatgctattttc |
846 |
T |
|
| Q |
107 |
atccaattatgatctacaatagcaatacagactaggaaa-tcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaatc |
205 |
Q |
| |
|
|||||||||||||| |||| | || || ||| | ||||| || |||||||||||||| ||||| |||||||||| |||||||| |||||||||||||||| |
|
|
| T |
847 |
atccaattatgatcaacaacaacattataga-tcggaaactcttactaatcatcaaacacaactttataaacctaaatcttacacattttcttcaaaatc |
945 |
T |
|
| Q |
206 |
atcattaaccctaattttcccaattttaccataagaacagttaaattactcaattttcagaaatcatatattatcattattga-agatgatcccaccctt |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
946 |
gccattaaccctaattttcccaattttaccataagaacagttaaattgcttaattttcagaaatcatatattatcactattgagagatgatcccaccctt |
1045 |
T |
|
| Q |
305 |
accttag |
311 |
Q |
| |
|
||||||| |
|
|
| T |
1046 |
accttag |
1052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1469 (Bit Score: 181; Significance: 8e-98; HSPs: 1)
Name: scaffold1469
Description:
Target: scaffold1469; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 36 - 311
Target Start/End: Original strand, 1134 - 1410
Alignment:
| Q |
36 |
aacaacaacaattcagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttcatccaattatgatctacaatagcaataca |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| |||| | ||||||| |
|
|
| T |
1134 |
aacaacaacaattcagcccaatcaagcattcatacagaaacttccaaattcacacataacatgctattttcatccaattatgatcaacaacaacaataca |
1233 |
T |
|
| Q |
136 |
gactaggaaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaatcatcattaaccctaattttcccaattttacc |
235 |
Q |
| |
|
|| ||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1234 |
gattaggaaatcatactaatcatcaattataacattgtaaacctgaatcttacgcattttcttcaaaatcatcattagacctaattttcccaattttacc |
1333 |
T |
|
| Q |
236 |
ataagaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttag |
311 |
Q |
| |
|
|||||||||||||||| | |||||||||||| ||||||||| || ||||| ||| |||||||||||||||||| |
|
|
| T |
1334 |
ttaagaacagttaaattgtttaattttcagaaagcatatattaacactattgaaaggaaatcccacccttaccttag |
1410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 129; Significance: 9e-67; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 104 - 311
Target Start/End: Original strand, 2465208 - 2465416
Alignment:
| Q |
104 |
ttcatccaattatgatctacaatagcaatacagactaggaaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaa |
203 |
Q |
| |
|
||||||||||||||||| ||| | ||||||||| |||||||||||| ||||||||||||| |||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
2465208 |
ttcatccaattatgatcaacatcaacaatacagagtaggaaatcatattaatcatcaaatataacattataaacctaaatcttacacattttcttcaaaa |
2465307 |
T |
|
| Q |
204 |
tcatcattaaccctaattttcccaattttaccataagaacagttaaattactcaattttcagaaatcatatattatcattattgaa-gatgatcccaccc |
302 |
Q |
| |
|
| ||||||||||||||| || | ||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2465308 |
ttgccattaaccctaatttcccaatttttaccataaaaacagttaaattgcttaattttcagaaatcatatattatcattattgaaggatgatcccaccc |
2465407 |
T |
|
| Q |
303 |
ttaccttag |
311 |
Q |
| |
|
||||||||| |
|
|
| T |
2465408 |
ttaccttag |
2465416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 104 - 311
Target Start/End: Complemental strand, 3857574 - 3857365
Alignment:
| Q |
104 |
ttcatccaattatgatctacaatagcaatacagactaggaaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaa |
203 |
Q |
| |
|
||||||||||||| ||| ||| | ||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
3857574 |
ttcatccaattataatcaacatcaacaatacagagtaggaaatcatattaatcatcaaatacaacattataaacctaaatcttacacattttcttcaaaa |
3857475 |
T |
|
| Q |
204 |
tcatcattaaccctaattttcccaatttt---accataagaacagttaaattactcaattttcagaaatcatatattatcattattgaagatgatcccac |
300 |
Q |
| |
|
| ||||||||||||||| ||||||||| ||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3857474 |
ttgccattaaccctaattt-cccaatttttttaccataaaaacagttaaattgcttaattttcagaaatcatatattatcattattgaagatgatcccac |
3857376 |
T |
|
| Q |
301 |
ccttaccttag |
311 |
Q |
| |
|
||||||||||| |
|
|
| T |
3857375 |
ccttaccttag |
3857365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 8 - 311
Target Start/End: Original strand, 16090822 - 16091130
Alignment:
| Q |
8 |
gacatcaacaggaacaacaactag-cattaacaacaacaattcagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttc |
106 |
Q |
| |
|
|||||||| ||||||| |||||| ||| ||||||| ||||||||||||||||||||||||| |||| | | |||||||| ||| | || |||||||| |
|
|
| T |
16090822 |
gacatcaaaaggaacagcaactaaacatcaacaacatcaattcagcccaatcaagcattcattcagaacttccaaaattcatccatcatattctattttc |
16090921 |
T |
|
| Q |
107 |
atc-caattatgatctacaatagcaatacagactaggaaatcatactaatcat-caaatacaacattataaacctgaatcttacgcattttctt-caaaa |
203 |
Q |
| |
|
|| |||||| |||| | | | ||| | || || ||||||||||||||||| ||||||||||||||||||||||| |||||| | ||||||| ||||| |
|
|
| T |
16090922 |
atttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaaa |
16091021 |
T |
|
| Q |
204 |
tcatcattaaccctaattttcccaattttaccataagaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccaccc |
302 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| || |||||||| |||| | || |||||||||| | ||||||| | ||||| ||||| ||||||||| |
|
|
| T |
16091022 |
tcatcattaacccttattttcccaattttaccttaggaacagtttaattgattaactttcagaaattacatattatgactattgaaagataatcccaccc |
16091121 |
T |
|
| Q |
303 |
ttaccttag |
311 |
Q |
| |
|
||||||||| |
|
|
| T |
16091122 |
ttaccttag |
16091130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 8 - 311
Target Start/End: Complemental strand, 29181417 - 29181109
Alignment:
| Q |
8 |
gacatcaacaggaacaacaactag-cattaacaacaacaattcagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttc |
106 |
Q |
| |
|
|||||||| ||||||| |||||| ||| ||||||| |||||||||||||||||||||||||| |||| | | |||||||| ||| | || |||||||| |
|
|
| T |
29181417 |
gacatcaaaaggaacagcaactaaacatcaacaacatcaattcagcccaatcaagcattcatacagaacttccaaaattcatccatcatattctattttc |
29181318 |
T |
|
| Q |
107 |
atc-caattatgatctacaatagcaatacagactaggaaatcatactaatcat-caaatacaacattataaacctgaatcttacgcattttctt-caaaa |
203 |
Q |
| |
|
|| |||||| |||| | | | ||| | || || ||||||||||||||||| ||||||||||||||||| ||||| |||||| | ||||||| ||||| |
|
|
| T |
29181317 |
atttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataagcctgattcttacaccttttctttcaaaa |
29181218 |
T |
|
| Q |
204 |
tcatcattaaccctaattttcccaattttaccataagaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccaccc |
302 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||| |||||| |||| |||| | ||||||||||||| | ||||||| | ||||| ||||| ||||||||| |
|
|
| T |
29181217 |
tcatcattaacccttattttccaaattttaccttaagaatagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccaccc |
29181118 |
T |
|
| Q |
303 |
ttaccttag |
311 |
Q |
| |
|
||||||||| |
|
|
| T |
29181117 |
ttaccttag |
29181109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 36 - 311
Target Start/End: Complemental strand, 20906738 - 20906461
Alignment:
| Q |
36 |
aacaacaacaattcagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttcatc-caattatgatctacaatagcaatac |
134 |
Q |
| |
|
|||||||||||||||||||| |||||||||| || | ||| ||| ||||||| ||| | || |||||||||| |||||| |||| ||| | ||| | |
|
|
| T |
20906738 |
aacaacaacaattcagcccattcaagcattcttaca-aaacttctcaattcatccatcatattctattttcatttcaattacgatcaacatcaacaacat |
20906640 |
T |
|
| Q |
135 |
agactaggaaatcatactaatcatcaaa-tacaacattataaacctgaatcttacgcattttctt-caaaatcatcattaaccctaattttcccaatttt |
232 |
Q |
| |
|
||| || ||||||||||||| ||||||| ||||||||||||||| ||| ||||| | ||||||| ||||||||||||||||||| | || ||||||||| |
|
|
| T |
20906639 |
agattaagaaatcatactaaacatcaaagtacaacattataaacttgattcttataccttttctttcaaaatcatcattaacccttaatt-cccaatttt |
20906541 |
T |
|
| Q |
233 |
accataagaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttag |
311 |
Q |
| |
|
||| |||||| |||| |||| | ||||||||||||| ||||||||| | ||||| ||||| |||||||||||||||||| |
|
|
| T |
20906540 |
accttaagaatagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttag |
20906461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 36 - 217
Target Start/End: Original strand, 2966741 - 2966925
Alignment:
| Q |
36 |
aacaacaacaattcagcccaatcaagcattcatatagaaaattcc-aaattcatacataacatgctattttca-tccaattatgatctacaatagcaata |
133 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| | ||| |||| |||||||| ||| | || ||||||||| |||||||| |||| ||| | ||| | |
|
|
| T |
2966741 |
aacaacaacaattcagcccattcaagcattcataca-aaacttccaaaattcatccatcatattctattttcattccaattacgatcaacatcaacaaca |
2966839 |
T |
|
| Q |
134 |
cagactaggaaatcatactaatcatcaaa-tacaacattataaacctgaatcttacgcattttc-ttcaaaatcatcattaaccct |
217 |
Q |
| |
|
|| || ||||||||||||||||||||| |||||||||| |||||||| ||||| | ||||| ||||||| ||||||||||||| |
|
|
| T |
2966840 |
tggattaagaaatcatactaatcatcaaagtacaacattaaaaacctgattcttataccttttctttcaaaaacatcattaaccct |
2966925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 212 - 311
Target Start/End: Original strand, 2971209 - 2971309
Alignment:
| Q |
212 |
aaccctaattttcccaattttaccataagaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacccttacctta |
310 |
Q |
| |
|
|||||| || |||||||||||||| ||||||||||| |||| | ||||||||||||| ||| ||||| | ||||| ||||| ||||||||||||||||| |
|
|
| T |
2971209 |
aacccttatcttcccaattttaccttaagaacagttcaattgattaattttcagaaattataaattatgactattgaaagataatcccacccttacctta |
2971308 |
T |
|
| Q |
311 |
g |
311 |
Q |
| |
|
| |
|
|
| T |
2971309 |
g |
2971309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 311
Target Start/End: Original strand, 31155396 - 31155449
Alignment:
| Q |
259 |
ttttcagaaatcatatattatcattattgaa-gatgatcccacccttaccttag |
311 |
Q |
| |
|
||||||||||| ||||||||| || |||||| ||| |||||||||||||||||| |
|
|
| T |
31155396 |
ttttcagaaattatatattataatcattgaaagataatcccacccttaccttag |
31155449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 36 - 311
Target Start/End: Complemental strand, 91481 - 91202
Alignment:
| Q |
36 |
aacaacaacaattcagcccaatcaagcattcatatagaaaattccaaa-ttcatacataacatgctattttcatccaattatgatctacaatagcaatac |
134 |
Q |
| |
|
||||||||||||||| | |||||| ||||||| |||| ||| ||| ||||| ||| | || ||| ||||||||||||||||| ||| | |||||| |
|
|
| T |
91481 |
aacaacaacaattcattcaaatcaaacattcattcagaactttcaaaacttcatccattatattctaccttcatccaattatgatcaacatcaccaatac |
91382 |
T |
|
| Q |
135 |
agactaggaaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaatcatcattaaccctaattttcccaa---ttt |
231 |
Q |
| |
|
||| |||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||| |||||||| ||| |
|
|
| T |
91381 |
agagtaggaaatcatattaatcatcaaatacaacattataaacctaaatcttacacattttcttcaaaattgccattaaccctaa-tttcccaatttttt |
91283 |
T |
|
| Q |
232 |
taccataagaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttag |
311 |
Q |
| |
|
|||||||| |||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
91282 |
taccataaaaacagttaaattgcttaattttcagaaatcatatattatcattattgaaagatgatcccacccttaccttag |
91202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 36 - 311
Target Start/End: Complemental strand, 97207 - 96928
Alignment:
| Q |
36 |
aacaacaacaattcagcccaatcaagcattcatatagaaaattccaaa-ttcatacataacatgctattttcatccaattatgatctacaatagcaatac |
134 |
Q |
| |
|
||||||||||||||| | |||||| ||||||| |||| ||| ||| ||||| ||| | || ||| ||||||||||||||||| ||| | |||||| |
|
|
| T |
97207 |
aacaacaacaattcattcaaatcaaacattcattcagaactttcaaaacttcatccattatattctaccttcatccaattatgatcaacatcaccaatac |
97108 |
T |
|
| Q |
135 |
agactaggaaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaatcatcattaaccctaattttcccaa---ttt |
231 |
Q |
| |
|
||| |||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||| |||||||| ||| |
|
|
| T |
97107 |
agagtaggaaatcatattaatcatcaaatacaacattataaacctaaatcttacacattttcttcaaaattgccattaaccctaa-tttcccaatttttt |
97009 |
T |
|
| Q |
232 |
taccataagaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttag |
311 |
Q |
| |
|
|||||||| |||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
97008 |
taccataaaaacagttaaattgcttaattttcagaaatcatatattatcattattgaaagatgatcccacccttaccttag |
96928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 119; Significance: 8e-61; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 29 - 311
Target Start/End: Complemental strand, 9099357 - 9099071
Alignment:
| Q |
29 |
tagcattaacaacaacaattcagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttca-tccaa-ttatgatctacaat |
126 |
Q |
| |
|
|||||| ||||||||||||| | |||||||| ||||||| |||| | | |||||||| || | || ||||||||| ||||| |||||||| | | |
|
|
| T |
9099357 |
tagcatcaacaacaacaattaactccaatcaaacattcattcagaacttccaaaattcatctatcatattctattttcactccaaattatgatcaatatc |
9099258 |
T |
|
| Q |
127 |
agcaatacagactaggaaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaatcatcattaaccctaattttccc |
226 |
Q |
| |
|
| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
9099257 |
aacaatatagattaggaaatcatactaatcatcaaatacaacattataaacctgattcttacacattttcttcagaatcatcattaaccctaaatttccc |
9099158 |
T |
|
| Q |
227 |
aattttaccataagaacagttaaatt-actcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttag |
311 |
Q |
| |
|
||||||||| |||||||||||||||| | | | ||||||||||||||||||||| | ||||| ||||| |||||||||||||||||| |
|
|
| T |
9099157 |
aattttaccttaagaacagttaaattgattaatttttcagaaatcatatattataactattgaaagataatcccacccttaccttag |
9099071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 36 - 309
Target Start/End: Complemental strand, 21364757 - 21364484
Alignment:
| Q |
36 |
aacaacaacaattcagcccaatcaagcattcatatagaaaattccaaa-ttcatacataacatgctattttcatccaattatgatctacaatagcaatac |
134 |
Q |
| |
|
||||||||||||||| | |||||| ||||||| |||| ||| ||| ||||| ||| | || ||| ||||||||||||||||| ||| | |||||| |
|
|
| T |
21364757 |
aacaacaacaattcattcaaatcaaacattcattcagaactttcaaaacttcatccattatattctaccttcatccaattatgatcaacatcaacaatac |
21364658 |
T |
|
| Q |
135 |
agactaggaaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaatcatcattaaccctaattttcccaattttac |
234 |
Q |
| |
|
||| |||||||||||| |||||||||||||||||||||||||||| | |||||| ||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
21364657 |
agagtaggaaatcatattaatcatcaaatacaacattataaacctaagtcttacatattttcttcaaaaatgccattaaccctaa-tttcccaattttac |
21364559 |
T |
|
| Q |
235 |
cataagaacagttaaattactcaattttcagaaatcatatattatcattattgaa-gatgatcccacccttacctt |
309 |
Q |
| |
|
||||| |||||||||||| || |||||||||||||||||||||||||||| |||| ||| |||||||||||||||| |
|
|
| T |
21364558 |
cataa-aacagttaaattgcttaattttcagaaatcatatattatcattactgaaggataatcccacccttacctt |
21364484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 36 - 309
Target Start/End: Complemental strand, 23968739 - 23968466
Alignment:
| Q |
36 |
aacaacaacaattcagcccaatcaagcattcatatagaaaattccaaa-ttcatacataacatgctattttcatccaattatgatctacaatagcaatac |
134 |
Q |
| |
|
||||||||||||||| | |||||| ||||||| |||| ||| ||| ||||| ||| | || ||| ||||||||||||||||| ||| | |||||| |
|
|
| T |
23968739 |
aacaacaacaattcattcaaatcaaacattcattcagaactttcaaaacttcatccattatattctaccttcatccaattatgatcaacatcaacaatac |
23968640 |
T |
|
| Q |
135 |
agactaggaaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaatcatcattaaccctaattttcccaattttac |
234 |
Q |
| |
|
||| |||||||||||| |||||||||||||||||||||||||||| | |||||| ||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
23968639 |
agagtaggaaatcatattaatcatcaaatacaacattataaacctaagtcttacatattttcttcaaaaatgccattaaccctaa-tttcccaattttac |
23968541 |
T |
|
| Q |
235 |
cataagaacagttaaattactcaattttcagaaatcatatattatcattattgaa-gatgatcccacccttacctt |
309 |
Q |
| |
|
||||| |||||||||||| || |||||||||||||||||||||||||||| |||| ||| |||||||||||||||| |
|
|
| T |
23968540 |
cataa-aacagttaaattgcttaattttcagaaatcatatattatcattactgaaggataatcccacccttacctt |
23968466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 81 - 311
Target Start/End: Complemental strand, 20008181 - 20007946
Alignment:
| Q |
81 |
aaattcatacataacatgctattttcat-ccaattatgatctacaatagcaatacagactaggaaatcatactaatcatcaaa-tacaacattataaacc |
178 |
Q |
| |
|
|||||||| ||| | || |||||||||| ||||||| |||| || | ||||| ||| || |||| |||||||| ||||||| ||||||| |||||||| |
|
|
| T |
20008181 |
aaattcattcatcatattctattttcattccaattacgatcagcatcaacaatatagattaagaaaacatactaaacatcaaagtacaacaatataaacc |
20008082 |
T |
|
| Q |
179 |
tgaatcttacgcattttctt-caaaatcatcattaaccctaattttcccaattttaccataagaacagttaaatt-actcaattttcagaaatcatatat |
276 |
Q |
| |
|
||| |||| | ||||||| |||||||||| |||||||||| ||||||||||||||| ||||||||||| |||| | | | |||||| |||| |||||| |
|
|
| T |
20008081 |
tgatccttataccttttctttcaaaatcatccttaaccctaaatttcccaattttaccttaagaacagttcaattgattaatttttcataaattatatat |
20007982 |
T |
|
| Q |
277 |
tatcattattg-aagatgatcccacccttaccttag |
311 |
Q |
| |
|
||| | ||||| |||||||||||||||||||||||| |
|
|
| T |
20007981 |
tatgactattgaaagatgatcccacccttaccttag |
20007946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 182
Target Start/End: Original strand, 29097747 - 29097790
Alignment:
| Q |
139 |
taggaaatcatactaatcatcaaatacaacattataaacctgaa |
182 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
29097747 |
taggaaatcatactaatcatcaaatacaacagtataaacctgaa |
29097790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 311
Target Start/End: Original strand, 15458492 - 15458545
Alignment:
| Q |
259 |
ttttcagaaatcatatattatcattattgaa-gatgatcccacccttaccttag |
311 |
Q |
| |
|
||||||||||| ||||||||| || |||||| ||| |||||||||||||||||| |
|
|
| T |
15458492 |
ttttcagaaattatatattataatcattgaaagataatcccacccttaccttag |
15458545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 311
Target Start/End: Original strand, 15465087 - 15465140
Alignment:
| Q |
259 |
ttttcagaaatcatatattatcattattgaa-gatgatcccacccttaccttag |
311 |
Q |
| |
|
||||||||||| ||||||||| || |||||| ||| |||||||||||||||||| |
|
|
| T |
15465087 |
ttttcagaaattatatattataatcattgaaagataatcccacccttaccttag |
15465140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 119; Significance: 8e-61; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 29 - 311
Target Start/End: Complemental strand, 19235354 - 19235068
Alignment:
| Q |
29 |
tagcattaacaacaacaattcagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttca-tccaa-ttatgatctacaat |
126 |
Q |
| |
|
|||||| ||||||||||||| | |||||||| ||||||| |||| | | |||||||| || | || ||||||||| ||||| |||||||| | | |
|
|
| T |
19235354 |
tagcatcaacaacaacaattaactccaatcaaacattcattcagaacttccaaaattcatctatcatattctattttcactccaaattatgatcaatatc |
19235255 |
T |
|
| Q |
127 |
agcaatacagactaggaaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaatcatcattaaccctaattttccc |
226 |
Q |
| |
|
| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
19235254 |
aacaatatagattaggaaatcatactaatcatcaaatacaacattataaacctgattcttacacattttcttcagaatcatcattaaccctaaatttccc |
19235155 |
T |
|
| Q |
227 |
aattttaccataagaacagttaaatt-actcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttag |
311 |
Q |
| |
|
||||||||| |||||||||||||||| | | | ||||||||||||||||||||| | ||||| ||||| |||||||||||||||||| |
|
|
| T |
19235154 |
aattttaccttaagaacagttaaattgattaatttttcagaaatcatatattataactattgaaagataatcccacccttaccttag |
19235068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 8 - 311
Target Start/End: Original strand, 14865593 - 14865901
Alignment:
| Q |
8 |
gacatcaacaggaacaacaactag-cattaacaacaacaattcagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttc |
106 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||| | | |||||||| ||| | || |||||||| |
|
|
| T |
14865593 |
gacatcaacaggaacaacaactaaacatcaacaacaacaattcagcccaatcaagcattcatacagaacttccaaaattcatccatcatattctattttc |
14865692 |
T |
|
| Q |
107 |
atc-caattatgatctacaatagcaatacagactaggaaatcatactaatcatcaaa-tacaacattataaacctgaatcttacgcattttctt-caaaa |
203 |
Q |
| |
|
|| |||||| |||| | | | ||| | || || |||||||||||||||||| || |||||||||||||||||| |||||| | ||||||| ||||| |
|
|
| T |
14865693 |
atttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcatccaagtacaacattataaacctgcttcttacaccttttctttcaaaa |
14865792 |
T |
|
| Q |
204 |
tcatcattaaccctaattttcccaattttaccataagaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccaccc |
302 |
Q |
| |
|
|||||||||||| | ||||||||||||||||| ||||||||||| |||| | ||||||||||||| | ||||||| | ||||| ||||| ||||||||| |
|
|
| T |
14865793 |
tcatcattaaccattattttcccaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccaccc |
14865892 |
T |
|
| Q |
303 |
ttaccttag |
311 |
Q |
| |
|
||||||||| |
|
|
| T |
14865893 |
ttaccttag |
14865901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 36 - 311
Target Start/End: Complemental strand, 12033723 - 12033444
Alignment:
| Q |
36 |
aacaacaacaattcagcccaatcaagcattcatatagaaaattccaaa-ttcatacataacatgctattttca-tccaattatgatctacaatagcaata |
133 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| | ||| ||||||| ||||| ||| | || ||||||||| | |||||| |||| ||| | ||| | |
|
|
| T |
12033723 |
aacaacaacaattcagcccattcaagcattcataca-aaacttccaaaattcatccatcatattctattttcaattcaattacgatcaacatcaacaaca |
12033625 |
T |
|
| Q |
134 |
cagactaggaaatcatactaatcatcaaa-tacaacattataaacctgaatcttacgcattttctt-caaaatcatcattaaccctaattttcccaattt |
231 |
Q |
| |
|
||| || ||||||||||||| ||||||| ||||||||||||||||||| ||||| | ||||||| ||||||||||||||||||| | ||||||||||| |
|
|
| T |
12033624 |
tagattaagaaatcatactaaacatcaaagtacaacattataaacctgattcttataccttttctttcaaaatcatcattaacccttaatttcccaattt |
12033525 |
T |
|
| Q |
232 |
taccataagaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttag |
311 |
Q |
| |
|
|||| ||||||||||| |||| | ||||||||||||| ||||||||| | ||||| ||||| |||||||||||||||||| |
|
|
| T |
12033524 |
taccttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttag |
12033444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 142 - 311
Target Start/End: Original strand, 17131615 - 17131787
Alignment:
| Q |
142 |
gaaatcatactaatcatcaaa-tacaacattataaacctgaatcttacgcattttctt-caaaatcatcattaaccctaattttcccaattttaccataa |
239 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||| |||| | ||||||| |||||||||| |||||||||| ||||||||||||||| ||| |
|
|
| T |
17131615 |
gaaatcatactaaacatcaaagtacaacattataaacctgatccttataccttttctttcaaaatcatccttaaccctaaatttcccaattttaccttaa |
17131714 |
T |
|
| Q |
240 |
gaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttag |
311 |
Q |
| |
|
|||||||| |||| | ||||||||||||| ||||||||| | ||||| ||||| |||||||||||||||||| |
|
|
| T |
17131715 |
gaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttag |
17131787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 311
Target Start/End: Complemental strand, 23370562 - 23370505
Alignment:
| Q |
255 |
tcaattttcagaaatcatatattatcattattga-agatgatcccacccttaccttag |
311 |
Q |
| |
|
||||||||||||||| ||| ||||| |||||||| |||| ||||||||||||||||| |
|
|
| T |
23370562 |
tcaattttcagaaattatagattatgattattgagagatagtcccacccttaccttag |
23370505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0053 (Bit Score: 109; Significance: 8e-55; HSPs: 1)
Name: scaffold0053
Description:
Target: scaffold0053; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 8 - 311
Target Start/End: Complemental strand, 79798 - 79490
Alignment:
| Q |
8 |
gacatcaacaggaacaacaactag-cattaacaacaacaattcagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttc |
106 |
Q |
| |
|
|||||||| ||||||| |||||| ||| ||||||| |||||||||||||||||||||||||| |||| | | |||||||| ||| | || |||||||| |
|
|
| T |
79798 |
gacatcaaaaggaacagcaactaaacatcaacaacatcaattcagcccaatcaagcattcatacagaacttccaaaattcatccatcatattctattttc |
79699 |
T |
|
| Q |
107 |
atc-caattatgatctacaatagcaatacagactaggaaatcatactaatcat-caaatacaacattataaacctgaatcttacgcattttctt-caaaa |
203 |
Q |
| |
|
|| |||||| |||| | | | ||| | || || ||||||||||||||||| ||||||||||||||||||||||| |||||| | ||||||| ||||| |
|
|
| T |
79698 |
atttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaaa |
79599 |
T |
|
| Q |
204 |
tcatcattaaccctaattttcccaattttaccataagaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccaccc |
302 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||| |||| | ||||||||||||| | ||||||| | ||||| ||||| ||||||||| |
|
|
| T |
79598 |
tcatcattaacccttattttcccaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccaccc |
79499 |
T |
|
| Q |
303 |
ttaccttag |
311 |
Q |
| |
|
||||||||| |
|
|
| T |
79498 |
ttaccttag |
79490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 8 - 311
Target Start/End: Complemental strand, 16147138 - 16146830
Alignment:
| Q |
8 |
gacatcaacaggaacaacaactag-cattaacaacaacaattcagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttc |
106 |
Q |
| |
|
|||||||| ||||||| |||||| ||| ||||||| |||||||||||||||||||||||||| |||| | | |||||||| ||| | || |||||||| |
|
|
| T |
16147138 |
gacatcaaaaggaacagcaactaaacatcaacaacatcaattcagcccaatcaagcattcatacagaacttccaaaattcatccatcatattctattttc |
16147039 |
T |
|
| Q |
107 |
atc-caattatgatctacaatagcaatacagactaggaaatcatactaatcat-caaatacaacattataaacctgaatcttacgcattttctt-caaaa |
203 |
Q |
| |
|
|| |||||| |||| | | | ||| | || || ||||||||||||||||| ||||||||||||||||||||||| |||||| | ||||||| ||||| |
|
|
| T |
16147038 |
atttcaattacgatcaatatcaacaacatggattaagaaatcatactaatcattcaaatacaacattataaacctgattcttacaccttttctttcaaaa |
16146939 |
T |
|
| Q |
204 |
tcatcattaaccctaattttcccaattttaccataagaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccaccc |
302 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||| ||||||||||| |||| | ||||||||||||| | ||||||| | ||||| ||||| ||||||||| |
|
|
| T |
16146938 |
tcatcattaacccttattttccaaattttaccttaagaacagtttaattgattaattttcagaaattacatattatgactattgaaagataatcccaccc |
16146839 |
T |
|
| Q |
303 |
ttaccttag |
311 |
Q |
| |
|
||||||||| |
|
|
| T |
16146838 |
ttaccttag |
16146830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 36 - 311
Target Start/End: Original strand, 21710595 - 21710873
Alignment:
| Q |
36 |
aacaacaacaattcagcccaatcaagcattcatatagaaaattcc-aaattcatacataacatgctattttca-tccaattatgatctacaatagcaata |
133 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| | || |||| |||||||| ||| | || ||||||||| ||||||||||||| ||| | ||| | |
|
|
| T |
21710595 |
aacaacaacaattcagcccattcaagcattcataca-aagcttccaaaattcatccatcatattctattttcattccaattatgatcaacatcaacaaca |
21710693 |
T |
|
| Q |
134 |
cagactaggaaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttc-ttcaaaatcatcattaaccctaattttcccaatttt |
232 |
Q |
| |
|
||| || | ||||||||||| |||||| || |||||||||||||||| |||| | ||||| |||||||||||| | |||||||| |||||||||||| |
|
|
| T |
21710694 |
tagattaaggaatcatactaaacatcaagtataacattataaacctgatccttatactttttctttcaaaatcatcttaaaccctaaatttcccaatttt |
21710793 |
T |
|
| Q |
233 |
accataagaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttag |
311 |
Q |
| |
|
||| ||||||||||| |||| | ||||||||||||| ||||||||| | ||||| ||||| |||||||||||||||||| |
|
|
| T |
21710794 |
accttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttag |
21710873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 142 - 311
Target Start/End: Complemental strand, 20851304 - 20851132
Alignment:
| Q |
142 |
gaaatcatactaatcatcaaa-tacaacattataaacctgaatcttacgcattttctt-caaaatcatcattaaccctaattttcccaattttaccataa |
239 |
Q |
| |
|
||||||||||||| ||||||| ||||||| ||||||||||| |||| | ||||||| |||||||||| |||||||||| ||||||||||||||| ||| |
|
|
| T |
20851304 |
gaaatcatactaaacatcaaagtacaacaatataaacctgatccttataccttttctttcaaaatcatccttaaccctaaatttcccaattttaccttaa |
20851205 |
T |
|
| Q |
240 |
gaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttag |
311 |
Q |
| |
|
|||||||| |||| | ||||||||||||| ||||||||| | ||||| ||||| |||||||||||||||||| |
|
|
| T |
20851204 |
gaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttag |
20851132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 142 - 311
Target Start/End: Complemental strand, 20857931 - 20857759
Alignment:
| Q |
142 |
gaaatcatactaatcatcaaa-tacaacattataaacctgaatcttacgcattttctt-caaaatcatcattaaccctaattttcccaattttaccataa |
239 |
Q |
| |
|
|||| |||||||| ||||||| ||||||| ||||||||||| |||| | ||||||| |||||||||| |||||||||| ||||||||||||||| ||| |
|
|
| T |
20857931 |
gaaaacatactaaacatcaaagtacaacaatataaacctgatccttataccttttctttcaaaatcatccttaaccctaaatttcccaattttaccttaa |
20857832 |
T |
|
| Q |
240 |
gaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttag |
311 |
Q |
| |
|
|||||||| |||| | ||||||||||||| ||||||||| | ||||| ||||| |||||||||||||||||| |
|
|
| T |
20857831 |
gaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttag |
20857759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 142 - 311
Target Start/End: Original strand, 21706159 - 21706331
Alignment:
| Q |
142 |
gaaatcatactaatcatcaaa-tacaacattataaacctgaatcttacgcattttctt-caaaatcatcattaaccctaattttcccaattttaccataa |
239 |
Q |
| |
|
|||| |||||||| ||||||| ||||||| ||||||||||| |||| | ||||||| |||||||||| |||||||||| ||||||||||||||| ||| |
|
|
| T |
21706159 |
gaaaacatactaaacatcaaagtacaacaatataaacctgatccttataccttttctttcaaaatcatccttaaccctaaatttcccaattttaccttaa |
21706258 |
T |
|
| Q |
240 |
gaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttag |
311 |
Q |
| |
|
|||||||| |||| | ||||||||||||| ||||||||| | ||||| ||||| |||||||||||||||||| |
|
|
| T |
21706259 |
gaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttag |
21706331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 36 - 311
Target Start/End: Complemental strand, 50250 - 49970
Alignment:
| Q |
36 |
aacaacaacaattcagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttcatc-caattatgatctacaatagcaatac |
134 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||| | | |||||||| ||| | || |||||||||| |||||| |||| | | | ||| | |
|
|
| T |
50250 |
aacaacatcaattcagcccaatcaagcattcatacagaacttccaaaattcatccatcatattctattttcatttcaattacgatcaatatcaacaacat |
50151 |
T |
|
| Q |
135 |
agactaggaaatcatactaatcat-caaatacaacattataaacctgaatcttacgcattttctt-caaaatcatcattaaccctaattttcccaa-ttt |
231 |
Q |
| |
|
|| || ||||||||||||||| | |||||| |||||||||||||||| |||||| | ||||||| ||||||||||||||||||| |||||||||| ||| |
|
|
| T |
50150 |
ggattaagaaatcatactaatctttcaaatataacattataaacctgattcttacaccttttctttcaaaatcatcattaacccttattttcccaatttt |
50051 |
T |
|
| Q |
232 |
taccataagaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttag |
311 |
Q |
| |
|
|||| ||||||||||| |||| | |||||| |||||| | ||||||| | ||||| ||||| |||||||||||||||||| |
|
|
| T |
50050 |
taccttaagaacagtttaattgattaatttttagaaattacatattatgactattgaaagataatcccacccttaccttag |
49970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0384 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: scaffold0384
Description:
Target: scaffold0384; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 129 - 311
Target Start/End: Complemental strand, 16247 - 16064
Alignment:
| Q |
129 |
caatacagactaggaaatcatactaatcatcaaatacaacattataaacctgaatcttacgcattttcttcaaaatcatcattaaccctaattttcccaa |
228 |
Q |
| |
|
||||| ||| ||| |||||||||||||||||||||||||||| || ||||||| |||| | |||||||||||||||||||||||||||||| |||| | |
|
|
| T |
16247 |
caatatagattagaaaatcatactaatcatcaaatacaacatcatgaacctgattcttgcacattttcttcaaaatcatcattaaccctaa-attccaat |
16149 |
T |
|
| Q |
229 |
ttttaccataagaacagttaaatt-actcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttag |
311 |
Q |
| |
|
||||| | ||| |||||||||||| | | | ||||||||||||||||||||| | ||||| ||||| |||||||||||||||||| |
|
|
| T |
16148 |
ttttatcttaaaaacagttaaattgattaatttttcagaaatcatatattataactattgaaagataatcccacccttaccttag |
16064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 142 - 311
Target Start/End: Complemental strand, 24320842 - 24320670
Alignment:
| Q |
142 |
gaaatcatactaatcatcaaa-tacaacattataaacctgaatcttacgcattttc-ttcaaaatcatcattaaccctaattttcccaattttaccataa |
239 |
Q |
| |
|
||||||||||||| ||||||| ||||||| ||||||||||| | || | ||||| |||||||||||| |||||||||| ||||||||||||||| ||| |
|
|
| T |
24320842 |
gaaatcatactaaacatcaaagtacaacaatataaacctgatccctataccttttctttcaaaatcatccttaaccctaaatttcccaattttaccttaa |
24320743 |
T |
|
| Q |
240 |
gaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttag |
311 |
Q |
| |
|
|||||||| |||| | ||||||||||||| ||||||||| | ||||| ||||| |||||||||||||||||| |
|
|
| T |
24320742 |
gaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttag |
24320670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 311
Target Start/End: Complemental strand, 27940907 - 27940851
Alignment:
| Q |
256 |
caattttcagaaatcatatattatcattattgaagatgatcc-cacccttaccttag |
311 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||| | | || |||||||||||||| |
|
|
| T |
27940907 |
caattttcagaaatcatatattataatcattgaaggttagcctcacccttaccttag |
27940851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 81 - 311
Target Start/End: Complemental strand, 25181163 - 25180929
Alignment:
| Q |
81 |
aaattcatacataacatgctattttcat-ccaattatgatctacaatagcaatacagactaggaaatcatactaatcatcaaa-tacaacattataaacc |
178 |
Q |
| |
|
|||||||| ||| | || |||||||||| ||||||| |||| ||| | ||| | ||| || ||||||||||||| ||||||| ||||| | |||||||| |
|
|
| T |
25181163 |
aaattcatccatcatattctattttcattccaattacgatcaacatcaacaacatagattaagaaatcatactaaacatcaaagtacaaaaatataaacc |
25181064 |
T |
|
| Q |
179 |
tgaatcttacgcattttctt-caaaatcatcattaaccctaattttcccaattttaccataagaacagttaaattactcaattttcagaaatcatatatt |
277 |
Q |
| |
|
||| || | ||||||| |||||||||| |||||||||| ||||||||||||||| ||||||||||| |||| | ||||||||||||| ||||||| |
|
|
| T |
25181063 |
tgatcaatataccttttctttcaaaatcatccttaaccctaaatttcccaattttaccttaagaacagttcaattgattaattttcagaaattatatatt |
25180964 |
T |
|
| Q |
278 |
atcattattg-aagatgatcccacccttaccttag |
311 |
Q |
| |
|
|| | ||||| ||||| |||||||||||||||||| |
|
|
| T |
25180963 |
atgactattgaaagataatcccacccttaccttag |
25180929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 142 - 311
Target Start/End: Original strand, 10460 - 10632
Alignment:
| Q |
142 |
gaaatcatactaatcatcaaa-tacaacattataaacctgaatcttacgcattttctt-caaaatcatcattaaccctaattttcccaattttaccataa |
239 |
Q |
| |
|
||||||||||||| ||||||| ||||||| ||||||||| | | || | ||||||| |||||||||| |||||||||| ||||||||||||||| ||| |
|
|
| T |
10460 |
gaaatcatactaaacatcaaagtacaacaatataaaccttatccctataccttttctttcaaaatcatccttaaccctaaatttcccaattttaccttaa |
10559 |
T |
|
| Q |
240 |
gaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttag |
311 |
Q |
| |
|
||||| || |||| | ||||||||||||| ||||||||| | ||||| ||||| |||||||||||||||||| |
|
|
| T |
10560 |
gaacaattcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttag |
10632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0348 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0348
Description:
Target: scaffold0348; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 36 - 311
Target Start/End: Original strand, 9113 - 9391
Alignment:
| Q |
36 |
aacaacaacaattcagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttcat-ccaattatgatctacaat-agcaata |
133 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||| | ||| |||| ||||||| ||| | || |||||||| | |||||| ||||| ||||| | ||| | |
|
|
| T |
9113 |
aacaacaacaattcagcccattcaagcaatcataca-aaacttcccaattcatccatcatattctattttcgttccaattctgatc-acaatcaacaaca |
9210 |
T |
|
| Q |
134 |
cagactaggaaatcatactaatcatcaaat-acaacattataaacctgaatcttacgcattttctt-caaaatcatcattaaccctaattttcccaattt |
231 |
Q |
| |
|
||| | ||||||||||||| |||||||| |||||| |||||||| | |||||| | ||||||| ||||||||||||||||||| | || |||||||| |
|
|
| T |
9211 |
tagattgagaaatcatactaaacatcaaattacaacacaataaacctaattcttacaccttttctttcaaaatcatcattaacccttaatt-cccaattt |
9309 |
T |
|
| Q |
232 |
taccat-aagaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttag |
311 |
Q |
| |
|
||| | |||||||||| |||| | ||||||||||||| ||||||||| | ||||| ||||| |||||||||||||||||| |
|
|
| T |
9310 |
tacttttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatcccacccttaccttag |
9391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0023
Description:
Target: scaffold0023; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 36 - 311
Target Start/End: Original strand, 135216 - 135493
Alignment:
| Q |
36 |
aacaacaacaattcagcccaatcaagcattcatatagaaaattccaaattcatacataacatgctattttcat-ccaattatgatctacaat-agcaata |
133 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| | ||| |||| ||||||| ||| | || |||||||||| |||||| ||||| || || | ||| | |
|
|
| T |
135216 |
aacaacaacaattcagcccattcaagcattcataca-aaacttcccaattcatccatcatattctattttcattccaattttgatc-acgatcaacaaca |
135313 |
T |
|
| Q |
134 |
cagactaggaaatcatactaatcatcaaat-acaacattataaacctgaatcttacgcattttctt-caaaatcatcattaaccctaattttcccaattt |
231 |
Q |
| |
|
||| || ||||||||||||| |||||||| |||||| |||||||||| |||||| | ||||||| ||||||||||||||||||| | || | |||||| |
|
|
| T |
135314 |
tagattaagaaatcatactaa-catcaaattacaacacaataaacctgattcttacaccttttctttcaaaatcatcattaacccttaatt-ctcaattt |
135411 |
T |
|
| Q |
232 |
taccat-aagaacagttaaattactcaattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttag |
311 |
Q |
| |
|
|||| | |||||||||| |||| | ||||||||||||| ||||||||| | ||||| ||||| ||| ||| |||||||||| |
|
|
| T |
135412 |
tacctttaagaacagttcaattgattaattttcagaaattatatattatgactattgaaagataatctcacgcttaccttag |
135493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1318 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold1318
Description:
Target: scaffold1318; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 163 - 310
Target Start/End: Complemental strand, 2062 - 1913
Alignment:
| Q |
163 |
tacaacattataaacctgaatcttacgcattttctt-caaaatcatcattaaccctaattttcccaattttaccat-aagaacagttaaattactcaatt |
260 |
Q |
| |
|
||||||| |||||||| | |||||| | ||||||| ||||||||||||||||||| | || ||||||||||| | |||||||||| |||| | |||| |
|
|
| T |
2062 |
tacaacacaataaacctaattcttacaccttttctttcaaaatcatcattaacccttaatt-cccaattttactttcaagaacagttcaattgattaatt |
1964 |
T |
|
| Q |
261 |
ttcagaaatcatatattatcattattg-aagatgatcccacccttacctta |
310 |
Q |
| |
|
||||||||| ||||||||| | ||||| ||||| ||||||||||||||||| |
|
|
| T |
1963 |
ttcagaaattatatattatgactattgaaagataatcccacccttacctta |
1913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0099 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0099
Description:
Target: scaffold0099; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 139 - 309
Target Start/End: Original strand, 12836 - 13019
Alignment:
| Q |
139 |
taggaaatcatactaatcat-caaatacaacattataaacct-gaatctt-acgcattttcttcaaaatcat-cattaaccctaattttccc--aatttt |
232 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| || |||| || ||||| ||||| |||||| |||||||||||| |||||| | |||| |
|
|
| T |
12836 |
taggaaatcatactaatcatacaaatacaacattataaacctagattcttaacacatttccttcagaatcatacattaaccctaaatttccccaattttt |
12935 |
T |
|
| Q |
233 |
acc-ataagaacagttaaatt----actcaattttcagaaatcatatattatcattattg--aagatgatcccacccttacctt |
309 |
Q |
| |
|
||| |||||||||||||| | | | | |||| ||||||||||||||| | ||||| ||||| |||||||||||||||| |
|
|
| T |
12936 |
acctttaagaacagttaaaatttagattaattttttagaaatcatatattagaactattgtaaagataatcccacccttacctt |
13019 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0609 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0609
Description:
Target: scaffold0609; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 311
Target Start/End: Complemental strand, 5912 - 5857
Alignment:
| Q |
257 |
aattttcagaaatcatatattatcattattg-aagatgatcccacccttaccttag |
311 |
Q |
| |
|
||||||||||||| ||||||||| || |||| ||||| |||||||||||||||||| |
|
|
| T |
5912 |
aattttcagaaattatatattataatcattgaaagataatcccacccttaccttag |
5857 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0815 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0815
Description:
Target: scaffold0815; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 233
Target Start/End: Original strand, 1388 - 1425
Alignment:
| Q |
196 |
cttcaaaatcatcattaaccctaattttcccaatttta |
233 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
1388 |
cttcaaaatcagcattaaccctaatttttccaatttta |
1425 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0553 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0553
Description:
Target: scaffold0553; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 311
Target Start/End: Complemental strand, 10252 - 10195
Alignment:
| Q |
255 |
tcaattttcagaaatcatatattatcattattga-agatgatcccacccttaccttag |
311 |
Q |
| |
|
||||||||||||||| ||| ||||| |||||||| |||| ||||||||||||||||| |
|
|
| T |
10252 |
tcaattttcagaaattatagattatgattattgagagatagtcccacccttaccttag |
10195 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0544 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0544
Description:
Target: scaffold0544; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 311
Target Start/End: Complemental strand, 1582 - 1525
Alignment:
| Q |
255 |
tcaattttcagaaatcatatattatcattattga-agatgatcccacccttaccttag |
311 |
Q |
| |
|
||||||||||||||| ||| ||||| |||||||| |||| ||||||||||||||||| |
|
|
| T |
1582 |
tcaattttcagaaattatagattatgattattgagagatagtcccacccttaccttag |
1525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0249 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0249
Description:
Target: scaffold0249; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 311
Target Start/End: Complemental strand, 13947 - 13894
Alignment:
| Q |
259 |
ttttcagaaatcatatattatcattattgaa-gatgatcccacccttaccttag |
311 |
Q |
| |
|
||||||||||| ||||||||| || |||||| ||| |||||||||||||||||| |
|
|
| T |
13947 |
ttttcagaaattatatattataatcattgaaagataatcccacccttaccttag |
13894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0183 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0183
Description:
Target: scaffold0183; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 311
Target Start/End: Original strand, 6 - 59
Alignment:
| Q |
259 |
ttttcagaaatcatatattatcattattg-aagatgatcccacccttaccttag |
311 |
Q |
| |
|
|||||||||||||||||||| | ||||| ||||| |||||||||||||||||| |
|
|
| T |
6 |
ttttcagaaatcatatattagaactattgaaagataatcccacccttaccttag |
59 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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