View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6971_high_1 (Length: 429)
Name: NF6971_high_1
Description: NF6971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6971_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 36056192 - 36055779
Alignment:
| Q |
1 |
taagtaaaaaacggtgtccaaaatgtctatcccttccgaccatactcaagagggggtacctcagggttcaatgtaagagttgcaaaggcaattatactac |
100 |
Q |
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|||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36056192 |
taagtaaaaattggtgtccaaaacgtctatcccttccgtccatactcaagagggggtacctcagggttcaatgtaagagttgcaaaggcaattatactac |
36056093 |
T |
|
| Q |
101 |
tgcttgaactagtatatgggcttaaaggtagaaattcacaagtatttacttgttcgtgtaatttaaattcgtcatgctgctaatttggtattaaagtttg |
200 |
Q |
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| T |
36056092 |
tgcttgaactagtatatgggcttaaaggtagaaattcacaaggatttacttgttcgtgtaatttaaattcgtcatgctgctaatttggtattaaagtttg |
36055993 |
T |
|
| Q |
201 |
tccgacaatggggtttggggatgtttaagatgcatatatttaaatatgttttatcagaaaaacgttgttggaggttaatggtagagcacggaggttgtag |
300 |
Q |
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| T |
36055992 |
tccgacaatggggtttggggatgtttaagatgcgtatatttaaatatgttttatcagaaaaacgttgttggaggttaatagtagagcacagaggttgtag |
36055893 |
T |
|
| Q |
301 |
tttaaaattagggtgttcatgtttcataaacaatctgaattggatc------atggtttggttcaatctttaaaaacaactttaattaaaaagggagatg |
394 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36055892 |
tttaaaattagggtgttcatgtttcataaaccatctgaattggatcacaacgatggtttggttcaatctttaaaaacaactttaattaaaaagggagatg |
36055793 |
T |
|
| Q |
395 |
ttatatatcccgac |
408 |
Q |
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|||||||||||||| |
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| T |
36055792 |
ttatatatcccgac |
36055779 |
T |
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