View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6971_high_11 (Length: 281)
Name: NF6971_high_11
Description: NF6971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6971_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 274
Target Start/End: Complemental strand, 36065144 - 36064888
Alignment:
| Q |
18 |
aaatgaagcctaaggtgacatgttaatgagatagcacgacgtgttaattgcctccacacataaaccttttgatatttacgcatttaacaagagacatctt |
117 |
Q |
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| T |
36065144 |
aaatgaagcctaaggtgacatgttaatgagatagcacgacgtgttaattgcctccacacataaatcttttgatatttacgcatttaacatgagacatctt |
36065045 |
T |
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| Q |
118 |
tcccttttatttagagacatgttcattctctcttctacaccannnnnnngtggtgtctttctaactaaaaaatgcatatcaatattgtgttcttcgtaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36065044 |
tcccttttatttagagacatgttcattctctcttctacaccatttttttgtggtgtctttctaactaaaaaatgcatatcaatattgtgttcttcgtaaa |
36064945 |
T |
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| Q |
218 |
ccttcttgaaatttgaatcattgtactctgtctcattatcttattacgaatacttga |
274 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
36064944 |
ccttcttgaaatttgaatcattgtactctgtctcattatcttattgcgaatacttga |
36064888 |
T |
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