View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6971_high_12 (Length: 276)
Name: NF6971_high_12
Description: NF6971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6971_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 48393341 - 48393095
Alignment:
| Q |
1 |
accaaatgctcaaaattaaataagaatcaacttgtttcaagacagcaagcaaatatatctcaattgaaaccctaagcacttgaatttcaataatttgtga |
100 |
Q |
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| T |
48393341 |
accaaatgctcaaaattaaataagaatcaacttgtttcaagacaacaagcaaatatatctcaattgaaaccctaagcacttgaatttcaataatttgtga |
48393242 |
T |
|
| Q |
101 |
aaatgacacaattgaattgaatcacatgtgtcagtgtcacacaccagacacacgcaccttctattagaagtgttggtgttacaagagcaaatacctcaat |
200 |
Q |
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| T |
48393241 |
aaatgacacaattgaattgaatcacatgtgtcagtgtcaca-------------caccttctattagaagtgttggtgttacaagagcaaatacctcaat |
48393155 |
T |
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| Q |
201 |
tggaaccctaactccctaaccatcttcataaacacaattaaaaaccataataaacaatta |
260 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
48393154 |
tggaaccctaactccctaaccatcttcaaaaacacaattaaaaaccataataaacaatta |
48393095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 137
Target Start/End: Complemental strand, 6284711 - 6284663
Alignment:
| Q |
89 |
aataatttgtgaaaatgacacaattgaattgaatcacatgtgtcagtgt |
137 |
Q |
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| T |
6284711 |
aataatttgagaaaatgacataattgaatttaatcacatgtgttagtgt |
6284663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 138
Target Start/End: Complemental strand, 19323496 - 19323449
Alignment:
| Q |
91 |
taatttgtgaaaatgacacaattgaattgaatcacatgtgtcagtgtc |
138 |
Q |
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| T |
19323496 |
taatttgagaaaatgacataattgaatttaatcacatgtgtaagtgtc |
19323449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 89 - 138
Target Start/End: Complemental strand, 9210875 - 9210826
Alignment:
| Q |
89 |
aataatttgtgaaaatgacacaattgaattgaatcacatgtgtcagtgtc |
138 |
Q |
| |
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||||||||| |||||||||| |||| ||| ||||||||||||||| |||| |
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| T |
9210875 |
aataatttgagaaaatgacataattcaatggaatcacatgtgtcaatgtc |
9210826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 16630804 - 16630852
Alignment:
| Q |
89 |
aataatttgtgaaaatgacacaattgaattgaatcacatgtgtcagtgt |
137 |
Q |
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|||||||| |||||||||| |||| |||| |||||||||||||||||| |
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| T |
16630804 |
aataatttaagaaaatgacataattcaatttaatcacatgtgtcagtgt |
16630852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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