View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6971_high_2 (Length: 405)

Name: NF6971_high_2
Description: NF6971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6971_high_2
NF6971_high_2
[»] chr7 (32 HSPs)
chr7 (12-405)||(8325236-8325635)
chr7 (45-196)||(15755927-15756078)
chr7 (270-333)||(4437495-4437558)
chr7 (270-333)||(4444896-4444959)
chr7 (45-217)||(3172163-3172332)
chr7 (271-333)||(16382178-16382240)
chr7 (91-191)||(16436408-16436508)
chr7 (265-333)||(45148204-45148272)
chr7 (270-331)||(14939426-14939487)
chr7 (270-331)||(15367019-15367080)
chr7 (273-333)||(33558343-33558403)
chr7 (270-333)||(9609889-9609952)
chr7 (270-333)||(9837461-9837524)
chr7 (270-333)||(31499852-31499915)
chr7 (270-333)||(48353987-48354050)
chr7 (271-333)||(34242595-34242657)
chr7 (265-325)||(16207054-16207114)
chr7 (270-333)||(16921406-16921469)
chr7 (157-353)||(26427125-26427328)
chr7 (151-335)||(6461265-6461456)
chr7 (160-217)||(16195656-16195712)
chr7 (151-187)||(13460840-13460876)
chr7 (273-309)||(16918234-16918270)
chr7 (270-309)||(17225410-17225449)
chr7 (303-333)||(15979563-15979593)
chr7 (151-196)||(9128922-9128967)
chr7 (151-196)||(39293366-39293411)
chr7 (151-191)||(6210575-6210615)
chr7 (151-187)||(12246474-12246510)
chr7 (151-187)||(14252968-14253004)
chr7 (151-191)||(14278128-14278168)
chr7 (151-187)||(45148083-45148119)
[»] chr8 (21 HSPs)
chr8 (45-405)||(18032750-18033114)
chr8 (46-189)||(23543826-23543970)
chr8 (270-333)||(19333110-19333173)
chr8 (270-330)||(24554068-24554128)
chr8 (239-333)||(26010062-26010153)
chr8 (270-333)||(29296543-29296606)
chr8 (270-333)||(7468891-7468954)
chr8 (271-330)||(15931973-15932032)
chr8 (270-333)||(24266646-24266709)
chr8 (270-333)||(23227506-23227569)
chr8 (90-191)||(31195907-31196008)
chr8 (239-310)||(17265504-17265572)
chr8 (148-196)||(24623307-24623355)
chr8 (270-309)||(17283914-17283953)
chr8 (156-191)||(24906446-24906481)
chr8 (151-187)||(16041171-16041207)
chr8 (151-187)||(16042847-16042883)
chr8 (151-187)||(17500518-17500554)
chr8 (151-187)||(18610760-18610796)
chr8 (151-187)||(25608642-25608678)
chr8 (270-302)||(38637167-38637199)
[»] scaffold0282 (1 HSPs)
scaffold0282 (223-405)||(20382-20565)
[»] scaffold0333 (1 HSPs)
scaffold0333 (236-401)||(1409-1572)
[»] scaffold0005 (2 HSPs)
scaffold0005 (239-405)||(199458-199623)
scaffold0005 (157-191)||(200826-200860)
[»] chr4 (25 HSPs)
chr4 (239-405)||(14617754-14617919)
chr4 (272-405)||(18420298-18420434)
chr4 (46-191)||(18667805-18667951)
chr4 (270-333)||(12732791-12732854)
chr4 (46-129)||(18713540-18713623)
chr4 (47-134)||(5889743-5889832)
chr4 (151-310)||(19076291-19076452)
chr4 (45-137)||(12415209-12415293)
chr4 (272-325)||(42707399-42707452)
chr4 (270-333)||(7187397-7187460)
chr4 (270-333)||(38763427-38763490)
chr4 (272-335)||(10115854-10115918)
chr4 (270-333)||(18275463-18275526)
chr4 (150-186)||(11774843-11774879)
chr4 (157-191)||(14616517-14616551)
chr4 (152-190)||(15676507-15676545)
chr4 (90-191)||(20847339-20847440)
chr4 (61-121)||(11774762-11774822)
chr4 (66-110)||(17957534-17957577)
chr4 (159-191)||(17958490-17958522)
chr4 (151-187)||(19699238-19699274)
chr4 (151-187)||(19709823-19709859)
chr4 (61-121)||(21958569-21958629)
chr4 (151-187)||(40902370-40902406)
chr4 (151-187)||(41918420-41918456)
[»] scaffold0205 (2 HSPs)
scaffold0205 (239-405)||(3893-4059)
scaffold0205 (157-295)||(4038-4176)
[»] chr3 (33 HSPs)
chr3 (62-189)||(8853552-8853679)
chr3 (151-353)||(27050239-27050443)
chr3 (9-186)||(10724833-10725016)
chr3 (265-333)||(17759919-17759987)
chr3 (265-333)||(19061239-19061307)
chr3 (66-196)||(16220351-16220481)
chr3 (46-197)||(13438448-13438600)
chr3 (270-331)||(17320068-17320129)
chr3 (270-333)||(4163673-4163736)
chr3 (270-333)||(18968736-18968799)
chr3 (270-333)||(43429026-43429089)
chr3 (271-333)||(21168206-21168268)
chr3 (77-185)||(19633441-19633550)
chr3 (270-333)||(4147166-4147229)
chr3 (270-333)||(14817185-14817248)
chr3 (270-333)||(25105454-25105517)
chr3 (270-333)||(6230122-6230188)
chr3 (271-326)||(34558515-34558570)
chr3 (270-309)||(12020605-12020644)
chr3 (270-309)||(17203320-17203359)
chr3 (151-217)||(2548038-2548105)
chr3 (151-196)||(11401079-11401124)
chr3 (151-191)||(17385351-17385391)
chr3 (151-191)||(54040208-54040248)
chr3 (151-191)||(54049495-54049535)
chr3 (155-217)||(12254393-12254453)
chr3 (157-191)||(6808921-6808955)
chr3 (152-190)||(25606936-25606974)
chr3 (150-187)||(31413915-31413952)
chr3 (270-310)||(15549172-15549212)
chr3 (151-187)||(15551132-15551168)
chr3 (151-191)||(17391840-17391880)
chr3 (151-191)||(25105585-25105625)
[»] scaffold0058 (1 HSPs)
scaffold0058 (62-319)||(79238-79493)
[»] chr6 (27 HSPs)
chr6 (45-196)||(1560297-1560448)
chr6 (148-333)||(5485823-5486007)
chr6 (265-333)||(4173162-4173230)
chr6 (265-333)||(4228771-4228839)
chr6 (265-333)||(29161995-29162063)
chr6 (270-333)||(32350720-32350783)
chr6 (270-333)||(15006140-15006203)
chr6 (265-333)||(11374336-11374404)
chr6 (67-197)||(19728996-19729127)
chr6 (270-333)||(29604207-29604270)
chr6 (265-329)||(17375241-17375305)
chr6 (270-333)||(18631100-18631163)
chr6 (157-254)||(24217359-24217457)
chr6 (90-137)||(10973245-10973292)
chr6 (148-197)||(12975025-12975074)
chr6 (270-309)||(21621781-21621820)
chr6 (270-309)||(22363687-22363726)
chr6 (272-353)||(14874942-14875023)
chr6 (267-309)||(25918331-25918373)
chr6 (303-333)||(31162373-31162403)
chr6 (151-191)||(12466181-12466221)
chr6 (151-187)||(16374881-16374917)
chr6 (302-330)||(16375036-16375064)
chr6 (151-187)||(19627830-19627866)
chr6 (151-187)||(22595128-22595164)
chr6 (151-187)||(31162523-31162559)
chr6 (151-187)||(35010948-35010984)
[»] chr5 (16 HSPs)
chr5 (265-333)||(21108171-21108239)
chr5 (270-333)||(26561277-26561340)
chr5 (270-333)||(6455319-6455382)
chr5 (270-333)||(29912698-29912761)
chr5 (271-333)||(5622919-5622981)
chr5 (157-351)||(37278075-37278276)
chr5 (97-217)||(25340876-25340995)
chr5 (270-333)||(24082755-24082818)
chr5 (96-197)||(19318119-19318220)
chr5 (90-137)||(19266820-19266867)
chr5 (156-191)||(33627894-33627929)
chr5 (152-190)||(18532420-18532458)
chr5 (152-190)||(22055384-22055422)
chr5 (151-191)||(14343509-14343549)
chr5 (151-187)||(16837014-16837050)
chr5 (151-187)||(34937951-34937987)
[»] chr1 (9 HSPs)
chr1 (265-333)||(33395960-33396028)
chr1 (271-333)||(49998806-49998868)
chr1 (270-329)||(40437764-40437823)
chr1 (270-333)||(46144415-46144478)
chr1 (270-309)||(17022213-17022252)
chr1 (279-330)||(52399275-52399326)
chr1 (150-191)||(21199241-21199282)
chr1 (151-187)||(20252698-20252734)
chr1 (151-187)||(33395840-33395876)
[»] chr2 (16 HSPs)
chr2 (270-333)||(25132827-25132890)
chr2 (223-310)||(34135778-34135865)
chr2 (266-327)||(20272008-20272069)
chr2 (273-333)||(6093474-6093534)
chr2 (270-333)||(19660978-19661041)
chr2 (270-333)||(24881247-24881310)
chr2 (90-198)||(18994703-18994810)
chr2 (150-191)||(24533278-24533319)
chr2 (328-405)||(34135698-34135777)
chr2 (270-309)||(9782416-9782455)
chr2 (270-309)||(40641786-40641825)
chr2 (152-190)||(24342999-24343037)
chr2 (90-187)||(45619705-45619803)
chr2 (151-187)||(7513687-7513723)
chr2 (151-187)||(22331166-22331202)
chr2 (151-187)||(42180034-42180070)
[»] scaffold1204 (1 HSPs)
scaffold1204 (271-333)||(1697-1759)
[»] scaffold0317 (2 HSPs)
scaffold0317 (265-333)||(15380-15448)
scaffold0317 (151-191)||(15512-15552)
[»] scaffold0003 (1 HSPs)
scaffold0003 (91-191)||(26038-26138)
[»] scaffold0357 (1 HSPs)
scaffold0357 (270-333)||(6379-6442)
[»] scaffold0253 (2 HSPs)
scaffold0253 (270-333)||(9996-10059)
scaffold0253 (270-333)||(19421-19484)
[»] scaffold0174 (2 HSPs)
scaffold0174 (266-333)||(21571-21638)
scaffold0174 (270-333)||(1226-1289)
[»] scaffold0107 (1 HSPs)
scaffold0107 (270-333)||(12084-12147)
[»] scaffold0006 (1 HSPs)
scaffold0006 (270-333)||(198841-198904)
[»] scaffold0031 (1 HSPs)
scaffold0031 (271-333)||(98643-98705)
[»] scaffold0013 (1 HSPs)
scaffold0013 (265-333)||(10846-10913)
[»] scaffold0387 (1 HSPs)
scaffold0387 (270-333)||(2427-2490)
[»] scaffold0047 (1 HSPs)
scaffold0047 (270-333)||(1558-1621)
[»] scaffold0024 (1 HSPs)
scaffold0024 (90-217)||(101086-101215)
[»] scaffold0017 (1 HSPs)
scaffold0017 (265-332)||(11226-11293)
[»] scaffold0111 (1 HSPs)
scaffold0111 (303-404)||(23029-23133)
[»] scaffold0021 (3 HSPs)
scaffold0021 (272-333)||(19259-19320)
scaffold0021 (272-333)||(23524-23585)
scaffold0021 (272-333)||(28835-28896)
[»] scaffold0219 (1 HSPs)
scaffold0219 (270-329)||(25432-25491)
[»] scaffold0175 (1 HSPs)
scaffold0175 (270-333)||(6643-6706)
[»] scaffold0032 (1 HSPs)
scaffold0032 (270-333)||(106095-106158)
[»] scaffold0028 (1 HSPs)
scaffold0028 (270-333)||(63949-64012)
[»] scaffold0412 (1 HSPs)
scaffold0412 (90-197)||(1624-1730)
[»] scaffold0009 (2 HSPs)
scaffold0009 (270-309)||(68148-68187)
scaffold0009 (151-196)||(256037-256082)
[»] scaffold0508 (1 HSPs)
scaffold0508 (148-197)||(5847-5896)
[»] scaffold0112 (1 HSPs)
scaffold0112 (302-333)||(12366-12397)
[»] scaffold0186 (1 HSPs)
scaffold0186 (90-191)||(11471-11573)
[»] scaffold0010 (1 HSPs)
scaffold0010 (270-308)||(29752-29790)
[»] scaffold0123 (1 HSPs)
scaffold0123 (151-217)||(33830-33897)
[»] scaffold1869 (1 HSPs)
scaffold1869 (157-217)||(801-860)
[»] scaffold0396 (1 HSPs)
scaffold0396 (151-187)||(171-207)
[»] scaffold0138 (3 HSPs)
scaffold0138 (151-187)||(26806-26842)
scaffold0138 (151-187)||(27821-27857)
scaffold0138 (151-187)||(39817-39853)
[»] scaffold0115 (1 HSPs)
scaffold0115 (151-187)||(20219-20255)


Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 12 - 405
Target Start/End: Complemental strand, 8325635 - 8325236
Alignment:
Q  12 tcatcataagtccacaagtatacaaccacaatcg-------catacaattcactttgttcaagtattcacgacaatcaccaaaaattcaccaatgcacat 104  Q
    |||||||||||||||||||||||||||| |||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8325635 tcatcataagtccacaagtatacaaccagaatcgagtaatgcatacaattcactttgttcaagtattcacgacaatcaccaaaaattcaccaatgcacat 8325536  T
Q  105 atacaccgattcacatattcaagtatgactcgattagttaatcaataaatgtatgcaatgttctagactcatctagatgcatgtggtgccatataggagt 204  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  8325535 atacaccgattcacatattcaagtatgactcgactagttaatcaataaatgtatgcaatgttctagactcatctagatgcatgtggtgccata--ggagt 8325438  T
Q  205 ccgaagataattt-acagtttgaatacacactcacgtaagagtacacctcctcccatgtatttcacctatgtaaaagtacatctccttttacatttctca 303  Q
    ||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8325437 ccgaagataattttacagtttgaatccacacccacgtaagagtacacctcctcccatgtatttcacctatgtaaaagtacatctccttttacatttctca 8325338  T
Q  304 tatgactcaatatgactatgatgcatggacttcaagtaagactcgacaatccgtctaacaccaactatataatcacaaacaatgtaaaagtacacctcca 403  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  8325337 tatgacttaatatgactatgatgcatggacttcaagtaagactcgacaatccgtttaacaccaactatataatcaccaacaatgtaaaagtacacctcca 8325238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 45 - 196
Target Start/End: Complemental strand, 15756078 - 15755927
Alignment:
Q  45 gcatacaattcactttgttcaagtattcacgacaatcaccaaaaattcaccaatgcacatatacaccgattcacatattcaagtatgactcgattagtta 144  Q
    ||||||||||||||||  ||||| |||||| |||||||||||| |||||||||||||||||||||| ||||  ||||||||||||||||||||||  | |    
T  15756078 gcatacaattcacttttctcaagaattcacaacaatcaccaaacattcaccaatgcacatatacactgatttgcatattcaagtatgactcgattcatca 15755979  T
Q  145 atcaataaatgtatgcaatgttctagactcatctagatgcatgtggtgccat 196  Q
    || || || ||  ||||||||||||||||| |||| || |||||||| ||||    
T  15755978 attaacaattgcttgcaatgttctagactcttctatatacatgtggtaccat 15755927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 270 - 333
Target Start/End: Original strand, 4437495 - 4437558
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4437495 ctatgtaaaagtacatctccttttacatttctcatatgactcgatatgactatgatgcatggac 4437558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 270 - 333
Target Start/End: Original strand, 4444896 - 4444959
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4444896 ctatgtaaaagtacatctccttttacatttctcatatgactcgatatgactatgatgcatggac 4444959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 45 - 217
Target Start/End: Complemental strand, 3172332 - 3172163
Alignment:
Q  45 gcatacaattcactttgttcaagtattcacgacaatcaccaaaaattcaccaatgcacatatacaccgattcacatattcaagtatgactcgattagtta 144  Q
    |||||||||| || |||||||||||||||| | ||||||||||| | |||||||||||||||| ||  ||||||||| ||||||| ||||| | |  | |    
T  3172332 gcatacaattaacattgttcaagtattcacaaaaatcaccaaaagt-caccaatgcacatatatacaaattcacataatcaagtacgactcaactcatga 3172234  T
Q  145 atcaataaatgtatgcaatgttctagactcatctagatgcatgtggtgccatataggagtccgaagataattt 217  Q
    ||  ||||||| |||||||||| || |||| |||||||||||||||| ||  |||||| |||| |||||||||    
T  3172233 atagataaatgcatgcaatgttttaaactcttctagatgcatgtggtacc--ataggattccggagataattt 3172163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 271 - 333
Target Start/End: Original strand, 16382178 - 16382240
Alignment:
Q  271 tatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  16382178 tatgtaagagtacacctccttttacatttctcatatgactcaatatgactatgatgcatggac 16382240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 91 - 191
Target Start/End: Complemental strand, 16436508 - 16436408
Alignment:
Q  91 tcaccaatgcacatatacaccgattcacatattcaagtatgactcgattagttaatcaataaatgtatgcaatgttctagactcatctagatgcatgtgg 190  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||| |    |||  ||||||| |||| ||||||||||||| |||||||||||||||    
T  16436508 tcaccaatgcacatatacaccgattcacataatcaagtaagactcgactcaccaatagataaatgcatgctatgttctagactcttctagatgcatgtgg 16436409  T
Q  191 t 191  Q
    |    
T  16436408 t 16436408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 265 - 333
Target Start/End: Original strand, 45148204 - 45148272
Alignment:
Q  265 ttcacctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    |||| |||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  45148204 ttcaactatgtaaaaatacacctccttttacatttctcatatgacttaatatgactatgatgcatggac 45148272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 270 - 331
Target Start/End: Original strand, 14939426 - 14939487
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatgg 331  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||    
T  14939426 ctatgtaaaagtacacctccttttacatttctcatatgactcgatatgacgatgatgcatgg 14939487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 270 - 331
Target Start/End: Original strand, 15367019 - 15367080
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatgg 331  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||    
T  15367019 ctatgtaaaagtacacctccttttacatttctcatatgactcgatatgacgatgatgcatgg 15367080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 273 - 333
Target Start/End: Original strand, 33558343 - 33558403
Alignment:
Q  273 tgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||    
T  33558343 tgtaaaagtacacctccttttacatttctcatatgactcaatatgaccacgatgcatggac 33558403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 270 - 333
Target Start/End: Original strand, 9609889 - 9609952
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    |||||||||||||||  ||||||||||||||||||||||||| ||||||| |||||||||||||    
T  9609889 ctatgtaaaagtacacatccttttacatttctcatatgactcgatatgacaatgatgcatggac 9609952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 270 - 333
Target Start/End: Original strand, 9837461 - 9837524
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    |||||||||||||||  ||||||||||||||||||||||||| ||||||| |||||| ||||||    
T  9837461 ctatgtaaaagtacacatccttttacatttctcatatgactcgatatgacaatgatgaatggac 9837524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 270 - 333
Target Start/End: Original strand, 31499852 - 31499915
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    ||||||||||||||| ||||||||||||| ||||||| |||| |||||||||||||| ||||||    
T  31499852 ctatgtaaaagtacacctccttttacattactcatataactcgatatgactatgatgaatggac 31499915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 270 - 333
Target Start/End: Original strand, 48353987 - 48354050
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    |||||||||||| ||| ||||||||||||||||||||||||| ||||||| ||||| |||||||    
T  48353987 ctatgtaaaagtgcatatccttttacatttctcatatgactcgatatgacaatgatacatggac 48354050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 271 - 333
Target Start/End: Complemental strand, 34242657 - 34242595
Alignment:
Q  271 tatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||   |||||||||||    
T  34242657 tatgtaaaagtacacctccttttacatttctcatatgactcgatatgacacagatgcatggac 34242595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 265 - 325
Target Start/End: Original strand, 16207054 - 16207114
Alignment:
Q  265 ttcacctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgat 325  Q
    |||| |||||||||| |||| ||||||||||||||||||||||||||||| || |||||||    
T  16207054 ttcaactatgtaaaattacacctccttttacatttctcatatgactcaatttgtctatgat 16207114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 270 - 333
Target Start/End: Complemental strand, 16921469 - 16921406
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    ||||||||||| |||  |||||||||||||||| |||||||| ||||||| |||||||||||||    
T  16921469 ctatgtaaaagaacacatccttttacatttctcttatgactcgatatgacaatgatgcatggac 16921406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 157 - 353
Target Start/End: Original strand, 26427125 - 26427328
Alignment:
Q  157 atgcaatgttctagactcatctagatgcatgtggtgccatataggagtccgaagataattta--cagtttgaatacacactcacgtaagagtacacctcc 254  Q
    |||||||||||||||||| |||| ||||| ||||| ||| || ||| ||||||||||||||   ||  |||||| ||||| ||| |||||||||||||||    
T  26427125 atgcaatgttctagactcttctaaatgcacgtggtacca-attggattccgaagataattttaccatattgaatccacacccacataagagtacacctcc 26427223  T
Q  255 tcccatgtatttcac-----ctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatg-atgcatggacttcaagt-aagactc 347  Q
     |  |||||||| ||     | | ||||||||| | || | ||||||||  ||||| ||||||||||||||||| |||||| ||||| |||| |||||||    
T  26427224 acttatgtattttaccaaagcaaggtaaaagta-accttcatttacattattcataagactcaatatgactatgaatgcatagactttaagtaaagactc 26427322  T
Q  348 gacaat 353  Q
    ||||||    
T  26427323 gacaat 26427328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 151 - 335
Target Start/End: Complemental strand, 6461456 - 6461265
Alignment:
Q  151 aaatgtatgcaatgttctagactcatctagatgcatgtggtgccatataggagtccgaagataattta-cagt-ttgaatacacactcacgtaagagtac 248  Q
    ||||| ||| |||||| ||||||| || ||||||||||||| ||| ||  || ||||||||||||||  | || |||||| ||| | |||||||||||||    
T  6461456 aaatgcatgaaatgttttagactcttcaagatgcatgtggtacca-attcgattccgaagataattttgccgtattgaatccacgcccacgtaagagtac 6461358  T
Q  249 acctcctcccatgtatttcaccta-----tgtaaaagtacatctccttttacatttctcatatgactcaatatgactat-gatgcatggactt 335  Q
    |||||| |  |  ||||||||| |     ||||||||||||||||| ||||||||  ||||| ||||||| ||||||||  ||||||||||||    
T  6461357 acctccacttacatatttcaccaaagcaatgtaaaagtacatctccatttacattcttcataagactcaacatgactataaatgcatggactt 6461265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 16195656 - 16195712
Alignment:
Q  160 caatgttctagactcatctagatgcatgtggtgccatataggagtccgaagataattt 217  Q
    |||| ||||||||||||||||||||||||||| |||| ||||| ||||| ||||||||    
T  16195656 caatattctagactcatctagatgcatgtggtaccat-taggattccgacgataattt 16195712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 13460840 - 13460876
Alignment:
Q  151 aaatgtatgcaatgttctagactcatctagatgcatg 187  Q
    |||||||||||||||||||||||| ||||||||||||    
T  13460840 aaatgtatgcaatgttctagactcttctagatgcatg 13460876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 309
Target Start/End: Original strand, 16918234 - 16918270
Alignment:
Q  273 tgtaaaagtacatctccttttacatttctcatatgac 309  Q
    |||||||||||| ||||||||||||||||||||||||    
T  16918234 tgtaaaagtacacctccttttacatttctcatatgac 16918270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 270 - 309
Target Start/End: Complemental strand, 17225449 - 17225410
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgac 309  Q
    ||||||||||||||| ||||||||||||||| ||||||||    
T  17225449 ctatgtaaaagtacacctccttttacatttcacatatgac 17225410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 333
Target Start/End: Complemental strand, 15979593 - 15979563
Alignment:
Q  303 atatgactcaatatgactatgatgcatggac 333  Q
    |||||||||||||||||||||||||||||||    
T  15979593 atatgactcaatatgactatgatgcatggac 15979563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 196
Target Start/End: Complemental strand, 9128967 - 9128922
Alignment:
Q  151 aaatgtatgcaatgttctagactcatctagatgcatgtggtgccat 196  Q
    ||||| || ||||||||||||||| |||||||||||||||| ||||    
T  9128967 aaatgcatacaatgttctagactcttctagatgcatgtggtaccat 9128922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 196
Target Start/End: Complemental strand, 39293411 - 39293366
Alignment:
Q  151 aaatgtatgcaatgttctagactcatctagatgcatgtggtgccat 196  Q
    ||||| |||||||||||||||||| |||||||||||| ||| ||||    
T  39293411 aaatgcatgcaatgttctagactcttctagatgcatgcggtaccat 39293366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 191
Target Start/End: Complemental strand, 6210615 - 6210575
Alignment:
Q  151 aaatgtatgcaatgttctagactcatctagatgcatgtggt 191  Q
    ||||| |||||||||||||||||| ||||||||||| ||||    
T  6210615 aaatgcatgcaatgttctagactcttctagatgcatatggt 6210575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 12246474 - 12246510
Alignment:
Q  151 aaatgtatgcaatgttctagactcatctagatgcatg 187  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  12246474 aaatgcatgcaatgttctagactcttctagatgcatg 12246510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 14253004 - 14252968
Alignment:
Q  151 aaatgtatgcaatgttctagactcatctagatgcatg 187  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  14253004 aaatgcatgcaatgttctagactcttctagatgcatg 14252968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 191
Target Start/End: Complemental strand, 14278168 - 14278128
Alignment:
Q  151 aaatgtatgcaatgttctagactcatctagatgcatgtggt 191  Q
    ||||| |||||||||||||||||| |||| |||||||||||    
T  14278168 aaatgcatgcaatgttctagactcttctaaatgcatgtggt 14278128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 45148083 - 45148119
Alignment:
Q  151 aaatgtatgcaatgttctagactcatctagatgcatg 187  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  45148083 aaatgcatgcaatgttctagactcttctagatgcatg 45148119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 158; Significance: 6e-84; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 45 - 405
Target Start/End: Original strand, 18032750 - 18033114
Alignment:
Q  45 gcatacaattcactttgttcaagtattcacgacaatcaccaaaaattcaccaatgcacatatacaccgattcacatattcaagtatgactcgattagtta 144  Q
    ||||| ||||||| || |||||||||| || || ||||||||| |||||||||| ||||||||||||||||||||||| |||||||| ||||| |    |    
T  18032750 gcatataattcacctttttcaagtattgacaacgatcaccaaacattcaccaatacacatatacaccgattcacatatccaagtatggctcgactcacca 18032849  T
Q  145 atcaataaatgtatgcaatgttctagactcatctagatgcatgtggtgccatataggagtccgaagataattt-acagtttgaatacacactcacgtaag 243  Q
    || || |||||  |||||||||||||||||||||||||||||||||| |||| ||| | ||   ||||||||| || |||||||  ||||| ||||||||    
T  18032850 attaacaaatgcgtgcaatgttctagactcatctagatgcatgtggtaccat-tag-attcaagagataattttaccgtttgaacccacacccacgtaag 18032947  T
Q  244 agtacacctcctcccatgtatttcacctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatga---tgcatggacttcaagt 340  Q
    |||||||||||||  | ||||||||||||||||||||||||  || |||||||||| ||||||||||||||||||| ||||   ||||||||||||||||    
T  18032948 agtacacctcctcttacgtatttcacctatgtaaaagtacacttcattttacatttttcatatgactcaatatgaccatgatgctgcatggacttcaagt 18033047  T
Q  341 aagactcgacaatccgtctaacaccaactatataatca--caaacaatgtaaaagtacacctccaat 405  Q
    ||||||||||||| |  |||||||||||||||||| ||  |||||||||||||||||||||||||||    
T  18033048 aagactcgacaatgcacctaacaccaactatataaccacccaaacaatgtaaaagtacacctccaat 18033114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 46 - 189
Target Start/End: Complemental strand, 23543970 - 23543826
Alignment:
Q  46 catacaattcactttgttcaagtattcacgacaatcaccaaaaattcaccaatgcacatatacaccgattcacatattcaagt-atgactcgattagtta 144  Q
    ||||||||||||||||||||||||| ||| ||||| ||||||| |||| |||||||||||||||||||||||||||||||| | | ||||||| |    |    
T  23543970 catacaattcactttgttcaagtatccacaacaattaccaaaagttcaacaatgcacatatacaccgattcacatattcaaataaggactcgactcacca 23543871  T
Q  145 atcaataaatgtatgcaatgttctagactcatctagatgcatgtg 189  Q
    || ||||| || |||||||||||||||||| ||||||||||||||    
T  23543870 attaataagtgcatgcaatgttctagactcttctagatgcatgtg 23543826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 270 - 333
Target Start/End: Complemental strand, 19333173 - 19333110
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19333173 ctatgtaaaagtacacctccttttacatttctcatatgactcaatatgactatgatgcatggac 19333110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 270 - 330
Target Start/End: Complemental strand, 24554128 - 24554068
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatg 330  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  24554128 ctatgtaaaagtacacctccttttacatttctcatatgactcgatatgactatgatgcatg 24554068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 239 - 333
Target Start/End: Original strand, 26010062 - 26010153
Alignment:
Q  239 gtaagagtacacctcctcccatgtatttcacctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    ||||||||||||||||||  ||| |   || ||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||    
T  26010062 gtaagagtacacctcctcttatgca---caactatgtaaaagtacacctccttttacatttctcatatgactcgatatgacaatgatgcatggac 26010153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 270 - 333
Target Start/End: Original strand, 29296543 - 29296606
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||    
T  29296543 ctatgtaaaagtacacctccttttacatttctcatatgactcgatatgacaatgatgcatggac 29296606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 270 - 333
Target Start/End: Original strand, 7468891 - 7468954
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    ||||||||||||| | ||| |||||||||||||||||||||| |||||||||||||||||||||    
T  7468891 ctatgtaaaagtatacctcgttttacatttctcatatgactcgatatgactatgatgcatggac 7468954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 271 - 330
Target Start/End: Original strand, 15931973 - 15932032
Alignment:
Q  271 tatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatg 330  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||    
T  15931973 tatgtaaaagtacacctccttttacatttctcatatgactcgatatgacgatgatgcatg 15932032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 270 - 333
Target Start/End: Original strand, 24266646 - 24266709
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||| ||||    
T  24266646 ctatgtaaaagtacacctccttttacatttctcatatgactcgatatgacaatgatgcacggac 24266709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 270 - 333
Target Start/End: Complemental strand, 23227569 - 23227506
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    ||||||||||||||| ||||||||||||||| |||||||||| ||||||| || ||||||||||    
T  23227569 ctatgtaaaagtacacctccttttacatttcacatatgactcgatatgacgataatgcatggac 23227506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 191
Target Start/End: Complemental strand, 31196008 - 31195907
Alignment:
Q  90 ttcaccaatgcacatatacaccgattcacatattcaagtatgactcgattagttaatcaat-aaatgtatgcaatgttctagactcatctagatgcatgt 188  Q
    |||||||||||||| ||| ||| | |||||||||||| |||||| ||| |  | ||| | | ||||| |||||||||||||||||| |||||||||||||    
T  31196008 ttcaccaatgcacaaata-accaagtcacatattcaattatgacacgactcatcaattattcaaatgcatgcaatgttctagactcttctagatgcatgt 31195910  T
Q  189 ggt 191  Q
    |||    
T  31195909 ggt 31195907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 239 - 310
Target Start/End: Original strand, 17265504 - 17265572
Alignment:
Q  239 gtaagagtacacctcctcccatgtatttcacctatgtaaaagtacatctccttttacatttctcatatgact 310  Q
    ||||||||||||||||||  ||| |   || ||||||||||||||| ||| |||||||||||||||||||||    
T  17265504 gtaagagtacacctcctcttatgaa---caactatgtaaaagtacacctctttttacatttctcatatgact 17265572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 24623307 - 24623355
Alignment:
Q  148 aataaatgtatgcaatgttctagactcatctagatgcatgtggtgccat 196  Q
    |||||||| ||||||||||||| |||| |||||||||||||||| ||||    
T  24623307 aataaatgcatgcaatgttctaaactcttctagatgcatgtggtaccat 24623355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 270 - 309
Target Start/End: Original strand, 17283914 - 17283953
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgac 309  Q
    ||||||||||||||| ||||||||||||||| ||||||||    
T  17283914 ctatgtaaaagtacacctccttttacatttcacatatgac 17283953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 156 - 191
Target Start/End: Original strand, 24906446 - 24906481
Alignment:
Q  156 tatgcaatgttctagactcatctagatgcatgtggt 191  Q
    ||||||||||||||||||||||| ||||||||||||    
T  24906446 tatgcaatgttctagactcatcttgatgcatgtggt 24906481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 16041207 - 16041171
Alignment:
Q  151 aaatgtatgcaatgttctagactcatctagatgcatg 187  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  16041207 aaatgcatgcaatgttctagactcttctagatgcatg 16041171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 16042883 - 16042847
Alignment:
Q  151 aaatgtatgcaatgttctagactcatctagatgcatg 187  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  16042883 aaatgcatgcaatgttctagactcttctagatgcatg 16042847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 17500518 - 17500554
Alignment:
Q  151 aaatgtatgcaatgttctagactcatctagatgcatg 187  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  17500518 aaatgcatgcaatgttctagactcttctagatgcatg 17500554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 18610760 - 18610796
Alignment:
Q  151 aaatgtatgcaatgttctagactcatctagatgcatg 187  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  18610760 aaatgcatgcaatgttctagactcttctagatgcatg 18610796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 25608642 - 25608678
Alignment:
Q  151 aaatgtatgcaatgttctagactcatctagatgcatg 187  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  25608642 aaatgcatgcaatgttctagactcttctagatgcatg 25608678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 302
Target Start/End: Complemental strand, 38637199 - 38637167
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctc 302  Q
    ||||||||||||||| |||||||||||||||||    
T  38637199 ctatgtaaaagtacacctccttttacatttctc 38637167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0282 (Bit Score: 116; Significance: 7e-59; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 223 - 405
Target Start/End: Complemental strand, 20565 - 20382
Alignment:
Q  223 ttgaatacacactcacgtaagagtacacctcctcccatgtatttcacctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactat 322  Q
    |||||| ||||| |||||||||||| | ||||||  | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  20565 ttgaatccacacccacgtaagagtaaaactcctcttacgtatttcacctatgtaaaagtacacctccttttacatttctcatatgactcaatatgactat 20466  T
Q  323 gatgcatggacttcaagtaagactcgacaatccgtctaacaccaactatataatca-caaacaatgtaaaagtacacctccaat 405  Q
    ||||||||||||||||||||||||||||||| |  ||||||| | ||||||||||| ||| |||| ||||||||||||||||||    
T  20465 gatgcatggacttcaagtaagactcgacaatgcacctaacacaatctatataatcaccaagcaatataaaagtacacctccaat 20382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0333 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: scaffold0333
Description:

Target: scaffold0333; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 236 - 401
Target Start/End: Complemental strand, 1572 - 1409
Alignment:
Q  236 cacgtaagagtacacctcctcccatgtatttcacctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggactt 335  Q
    |||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1572 cacgtaagagtacacctcctcttaagtatttcacctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatacatggactt 1473  T
Q  336 caagtaagactcgacaatccgtctaacaccaactatataatcac--aaacaatgtaaaagtacacctc 401  Q
    |    ||||||||||||| |  ||||||||||||||||||||||  || |||||||||||||||||||    
T  1472 c----aagactcgacaatgcacctaacaccaactatataatcaccaaagcaatgtaaaagtacacctc 1409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 101; Significance: 6e-50; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 239 - 405
Target Start/End: Complemental strand, 199623 - 199458
Alignment:
Q  239 gtaagagtacacctcctcccatgtatttcacctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggacttcaa 338  Q
    |||||| |||||||||||| | |||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||  |||||||||||| |||     
T  199623 gtaagattacacctcctcctacgtatttcacctatgtaaaggtacacctcattttacatttctcatatgactcaatatgac--tgatgcatggacgtcac 199526  T
Q  339 gtaagactcgacaatccgtctaacaccaactatataatc-acaaacaatgtaaaagtacacctccaat 405  Q
     |||||||||||||| || ||||||||||||||||||||  |||||||||||||||||||||||||||    
T  199525 ataagactcgacaatgcgcctaacaccaactatataatcgccaaacaatgtaaaagtacacctccaat 199458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 191
Target Start/End: Complemental strand, 200860 - 200826
Alignment:
Q  157 atgcaatgttctagactcatctagatgcatgtggt 191  Q
    |||||||||||||||||| ||||||||||||||||    
T  200860 atgcaatgttctagactcctctagatgcatgtggt 200826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 6e-50; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 239 - 405
Target Start/End: Original strand, 14617754 - 14617919
Alignment:
Q  239 gtaagagtacacctcctcccatgtatttcacctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggacttcaa 338  Q
    |||||| |||||||||||| | |||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||  |||||||||||| |||     
T  14617754 gtaagattacacctcctcctacgtatttcacctatgtaaaggtacacctcattttacatttctcatatgactcaatatgac--tgatgcatggacgtcac 14617851  T
Q  339 gtaagactcgacaatccgtctaacaccaactatataatc-acaaacaatgtaaaagtacacctccaat 405  Q
     |||||||||||||| || ||||||||||||||||||||  |||||||||||||||||||||||||||    
T  14617852 ataagactcgacaatgcgcctaacaccaactatataatcgccaaacaatgtaaaagtacacctccaat 14617919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 272 - 405
Target Start/End: Complemental strand, 18420434 - 18420298
Alignment:
Q  272 atgtaaaagtacatctccttttacatttctcatatgactcaatatgactatga-tgcatggacttcaagtaagactcgacaatccgtctaacaccaacta 370  Q
    |||||||| |||| |||| ||||||||  ||||| ||||||| |||||||||| ||||||||||||||||||||||||||||| |  |||||| ||||||    
T  18420434 atgtaaaattacacctccatttacattcatcataagactcaacatgactatgaatgcatggacttcaagtaagactcgacaatgcacctaacatcaacta 18420335  T
Q  371 tataatcac--aaacaatgtaaaagtacacctccaat 405  Q
    |||| ||||  || |||||||||||||||||||||||    
T  18420334 tatattcaccaaagcaatgtaaaagtacacctccaat 18420298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 46 - 191
Target Start/End: Complemental strand, 18667951 - 18667805
Alignment:
Q  46 catacaattcactttgttcaagtattcacgacaatcaccaaaaattcaccaatgcacatatacaccgattcacatattcaagt-atgactcgattagtta 144  Q
    |||| ||||||  |||| ||||||||||| ||||||||||||| |||||||||||||||||| || ||||||||||||||||| | ||||||| |    |    
T  18667951 catataattcatcttgtgcaagtattcacaacaatcaccaaaagttcaccaatgcacatatatactgattcacatattcaagtaaggactcgactcacca 18667852  T
Q  145 atcaataaatgtatgcaatgttctagactcatctagatgcatgtggt 191  Q
    |  ||||| |  ||||||||||||| |||| ||||||||||||||||    
T  18667851 agtaataagtacatgcaatgttctatactcttctagatgcatgtggt 18667805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 270 - 333
Target Start/End: Original strand, 12732791 - 12732854
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    ||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||    
T  12732791 ctatgtaaaagtacaccttcttttacatttctcatatgactcgatatgactatgatgcatggac 12732854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 46 - 129
Target Start/End: Complemental strand, 18713623 - 18713540
Alignment:
Q  46 catacaattcactttgttcaagtattcacgacaatcaccaaaaattcaccaatgcacatatacaccgattcacatattcaagta 129  Q
    |||| ||||||  |||| ||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||| ||||||    
T  18713623 catataattcatcttgtgcaagtattcacaacaatcaccaaaagttcaccaatgcacatatataccgattcacatatccaagta 18713540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 47 - 134
Target Start/End: Original strand, 5889743 - 5889832
Alignment:
Q  47 atacaattcactttgttcaagtattcacgacaatcaccaaaaattcaccaatgcacatatacaccgattcac--atattcaagtatgact 134  Q
    |||| |||||| || ||| |||||||||||| |||||||||| ||||||||||||||||||||| |||||||  ||||||||||||||||    
T  5889743 atactattcacctttttcgagtattcacgacgatcaccaaaatttcaccaatgcacatatacactgattcacatatattcaagtatgact 5889832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 151 - 310
Target Start/End: Original strand, 19076291 - 19076452
Alignment:
Q  151 aaatgtatgcaatgttctagactcatct--agatgcatgtggtgccatataggagtccgaagataat-ttacagt-ttgaatacacactcacgtaagagt 246  Q
    ||||| |||||||||||||||||  |||  ||||||||||||| ||||   ||| |||| ||||||| |||| || |||||| ||||| ||| |||||||    
T  19076291 aaatgcatgcaatgttctagacttttctttagatgcatgtggtaccatt--ggattccggagataatattactgtattgaatccacacccacataagagt 19076388  T
Q  247 acacctcctcccatgtatttcacctatgtaaaagtacatctccttttacatttctcatatgact 310  Q
    ||| ||||||  | ||||||||| || |||||| |||| ||||||||||||| |||||||||||    
T  19076389 acatctcctcttacgtatttcacatacgtaaaaatacacctccttttacattcctcatatgact 19076452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 45 - 137
Target Start/End: Original strand, 12415209 - 12415293
Alignment:
Q  45 gcatacaattcactttgttcaagtattcacgacaatcaccaaaaattcaccaatgcacatatacaccgattcacatattcaagtatgactcga 137  Q
    |||||||||||||||| ||| ||||||| | ||||||||||||||||        ||||||||||||||||||||||| ||||||||||||||    
T  12415209 gcatacaattcacttttttcgagtattcgcaacaatcaccaaaaatt--------cacatatacaccgattcacatatccaagtatgactcga 12415293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 272 - 325
Target Start/End: Original strand, 42707399 - 42707452
Alignment:
Q  272 atgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgat 325  Q
    ||||||||||||| ||||||||||||||| |||||||||| |||||||||||||    
T  42707399 atgtaaaagtacacctccttttacatttcacatatgactcgatatgactatgat 42707452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 270 - 333
Target Start/End: Complemental strand, 7187460 - 7187397
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    |||||||||||||||||||||||| |||||| |||||||||| ||||||| |  ||||||||||    
T  7187460 ctatgtaaaagtacatctccttttccatttcacatatgactcgatatgacgaatatgcatggac 7187397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 270 - 333
Target Start/End: Original strand, 38763427 - 38763490
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    ||||||||||||||| ||||||||||||||| ||||||||   ||||||| |||||||||||||    
T  38763427 ctatgtaaaagtacacctccttttacatttcacatatgacatgatatgacaatgatgcatggac 38763490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 272 - 335
Target Start/End: Complemental strand, 10115918 - 10115854
Alignment:
Q  272 atgtaaaagtacatctccttttacatttctcatatgactcaatatgactatg-atgcatggactt 335  Q
    ||||||||||||| |||| ||||||||  ||||| ||||||||||||||||| ||||||||||||    
T  10115918 atgtaaaagtacacctccatttacattcttcataagactcaatatgactatgaatgcatggactt 10115854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 270 - 333
Target Start/End: Original strand, 18275463 - 18275526
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    ||||||||||||||| |||||||| ||||| ||||||||||| ||||||| || ||| ||||||    
T  18275463 ctatgtaaaagtacacctccttttccatttatcatatgactcgatatgacaataatgtatggac 18275526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 186
Target Start/End: Original strand, 11774843 - 11774879
Alignment:
Q  150 taaatgtatgcaatgttctagactcatctagatgcat 186  Q
    |||||| ||||||||||||||||||||||||||||||    
T  11774843 taaatgcatgcaatgttctagactcatctagatgcat 11774879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 191
Target Start/End: Original strand, 14616517 - 14616551
Alignment:
Q  157 atgcaatgttctagactcatctagatgcatgtggt 191  Q
    |||||||||||||||||| ||||||||||||||||    
T  14616517 atgcaatgttctagactcctctagatgcatgtggt 14616551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 190
Target Start/End: Complemental strand, 15676545 - 15676507
Alignment:
Q  152 aatgtatgcaatgttctagactcatctagatgcatgtgg 190  Q
    |||| |||||||||||||||||| |||||||||||||||    
T  15676545 aatgcatgcaatgttctagactcctctagatgcatgtgg 15676507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 191
Target Start/End: Original strand, 20847339 - 20847440
Alignment:
Q  90 ttcaccaatgcacatatacaccgattcacatattcaagtatgactcgattagttaatcaataaatgtatgcaatgttctagactcatctagatgcatgtg 189  Q
    |||| |||||||||||  |||| || |||||| ||||||||||| || ||    ||| |  ||||| |||||||||||||||||| ||||||| ||||||    
T  20847339 ttcatcaatgcacataatcaccaatacacatagtcaagtatgacacgtttcaccaatgatcaaatgcatgcaatgttctagactcttctagatacatgtg 20847438  T
Q  190 gt 191  Q
    ||    
T  20847439 gt 20847440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 11774762 - 11774822
Alignment:
Q  61 gttcaagtattcacgacaatcaccaaaaattcaccaatgcacatatacaccgattcacata 121  Q
    |||||| ||||||| |  |||| ||||| | ||||||||||||||||||| ||||||||||    
T  11774762 gttcaaatattcacaatcatcaacaaaagtccaccaatgcacatatacactgattcacata 11774822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 17957534 - 17957577
Alignment:
Q  66 agtattcacgacaatcaccaaaaattcaccaatgcacatatacac 110  Q
    ||||||||| ||||||||||||| |||||||||||||||| ||||    
T  17957534 agtattcacaacaatcaccaaaa-ttcaccaatgcacatacacac 17957577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 191
Target Start/End: Original strand, 17958490 - 17958522
Alignment:
Q  159 gcaatgttctagactcatctagatgcatgtggt 191  Q
    |||||||||||||||| ||||||||||||||||    
T  17958490 gcaatgttctagactcgtctagatgcatgtggt 17958522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 19699274 - 19699238
Alignment:
Q  151 aaatgtatgcaatgttctagactcatctagatgcatg 187  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  19699274 aaatgcatgcaatgttctagactcttctagatgcatg 19699238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 19709859 - 19709823
Alignment:
Q  151 aaatgtatgcaatgttctagactcatctagatgcatg 187  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  19709859 aaatgcatgcaatgttctagactcttctagatgcatg 19709823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 21958569 - 21958629
Alignment:
Q  61 gttcaagtattcacgacaatcaccaaaaattcaccaatgcacatatacaccgattcacata 121  Q
    |||||| ||||||| || |||| ||||| | ||||||||||||| |||||| |||||||||    
T  21958569 gttcaaatattcacaaccatcaacaaaagtccaccaatgcacatttacaccaattcacata 21958629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 40902406 - 40902370
Alignment:
Q  151 aaatgtatgcaatgttctagactcatctagatgcatg 187  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  40902406 aaatgcatgcaatgttctagactcttctagatgcatg 40902370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 41918456 - 41918420
Alignment:
Q  151 aaatgtatgcaatgttctagactcatctagatgcatg 187  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  41918456 aaatgcatgcaatgttctagactcttctagatgcatg 41918420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 239 - 405
Target Start/End: Complemental strand, 4059 - 3893
Alignment:
Q  239 gtaagagtacacctcctcccatgtatttcacctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggacttcaa 338  Q
    ||||||||||||||||||  | ||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||  ||||||||||| |||||    
T  4059 gtaagagtacacctcctcttacgtatttcacctatgtaaaagtacacatccttttacatttctcatatgacttaatatgac--tgatgcatggaattcaa 3962  T
Q  339 gtaagactcgacaatccgtctaacaccaactatataatcac--aaacaatgtaaaagtacacctccaat 405  Q
    ||||||||||| ||| |  ||||||||||||||||||||||  || ||| |||||||||||||||||||    
T  3961 gtaagactcgaaaatgcacctaacaccaactatataatcaccaaagcaacgtaaaagtacacctccaat 3893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 157 - 295
Target Start/End: Complemental strand, 4176 - 4038
Alignment:
Q  157 atgcaatgttctagactcatctagatgcatgtggtgccatataggagtccgaagataattt-acagtttgaatacacactcacgtaagagtacacctcct 255  Q
    ||||||| |||||||||| |||||||||||||||| |||| | ||| |  |  |||||||| || || ||||| ||||  ||||||||||||||| ||||    
T  4176 atgcaatattctagactcttctagatgcatgtggtaccattt-ggattatggggataattttaccgtatgaatccacatccacgtaagagtacacatcct 4078  T
Q  256 cccatgtatttcacctatgtaaaagtacatctccttttac 295  Q
    |  | ||||||||||||||||| |||||| ||||| ||||    
T  4077 cttacgtatttcacctatgtaagagtacacctcctcttac 4038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 8e-40; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 62 - 189
Target Start/End: Complemental strand, 8853679 - 8853552
Alignment:
Q  62 ttcaagtattcacgacaatcaccaaaaattcaccaatgcacatatacaccgattcacatattcaagtatgactcgattagttaatcaataaatgtatgca 161  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |    ||| | |||||| |||||    
T  8853679 ttcaagtattcacaacaatcaccaaaagttcaccaatgcacatatacaccgattcacatattcaagtatgactcgactcaccaattattaaatgcatgca 8853580  T
Q  162 atgttctagactcatctagatgcatgtg 189  Q
    |||||||||||||||||||||| |||||    
T  8853579 atgttctagactcatctagatgtatgtg 8853552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 151 - 353
Target Start/End: Original strand, 27050239 - 27050443
Alignment:
Q  151 aaatgtatgcaatgttctagactcatctagatgcatgtggtgccatataggagtccgaagataat-ttacagt-ttgaatacacactcacgtaagagtac 248  Q
    ||||| ||||||||||||| |||  ||||||||||||| || ||||   ||| |||||| ||||| |||| || |||||| ||||| |||||||||||||    
T  27050239 aaatgcatgcaatgttctatactattctagatgcatgtagtaccatt--ggattccgaaaataatcttaccgtattgaatccacacccacgtaagagtac 27050336  T
Q  249 acctcctcccatgtatttcacctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac-ttcaagt-aagact 346  Q
    || |||||  | |||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||| | ||||| ||||||    
T  27050337 acatcctcttacgtatttcacctatgtaaaagtacacctctttttacatttctcatatgacttaatatgactatgatgcatggacatacaagtaaagact 27050436  T
Q  347 cgacaat 353  Q
    |||||||    
T  27050437 cgacaat 27050443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 9 - 186
Target Start/End: Original strand, 10724833 - 10725016
Alignment:
Q  9 acatcatcataagtccacaagtatacaaccacaatcg-------catacaattcactttgttcaagtattcacgacaatcaccaaaaattcaccaatgca 101  Q
    |||||||||||||||||||||||||||| ||||||||       ||||| |||||| || ||||||||||| | ||||||||||||| ||||||||||||    
T  10724833 acatcatcataagtccacaagtatacaaacacaatcgagtaatgcatacgattcacctttttcaagtattcgcaacaatcaccaaaa-ttcaccaatgca 10724931  T
Q  102 catatacaccgattcacatattcaagtatgactcgattagttaatcaataaatgtatgcaatgttctagactcatctagatgcat 186  Q
    ||||||||| ||||||| || ||||||| ||||||| |    |||  ||||||  ||||||| ||||||||||||||||||||||    
T  10724932 catatacacagattcacgtaatcaagtacgactcgactcaccaatagataaattcatgcaatattctagactcatctagatgcat 10725016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 265 - 333
Target Start/End: Complemental strand, 17759987 - 17759919
Alignment:
Q  265 ttcacctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17759987 ttcaactatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 17759919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 265 - 333
Target Start/End: Complemental strand, 19061307 - 19061239
Alignment:
Q  265 ttcacctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19061307 ttcaactatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 19061239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 66 - 196
Target Start/End: Complemental strand, 16220481 - 16220351
Alignment:
Q  66 agtattcacgacaatcaccaaaaattcaccaatgcacatatacaccgattcacatattcaagtatgactcgattagttaatcaataaatgtatgcaatgt 165  Q
    ||||||||| |||||||||| || ||||||||||||| ||||||| ||||||||||| ||||||| |||||| |    ||| | |||||| |||||||||    
T  16220481 agtattcacaacaatcaccagaagttcaccaatgcacttatacactgattcacatatccaagtattactcgactcaccaattattaaatgcatgcaatgt 16220382  T
Q  166 tctagactcatctagatgcatgtggtgccat 196  Q
    | |||||| ||||||||||||||||| ||||    
T  16220381 tttagacttatctagatgcatgtggtaccat 16220351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 46 - 197
Target Start/End: Original strand, 13438448 - 13438600
Alignment:
Q  46 catacaattcactttgttcaagtattcacgacaatcaccaaaaattcaccaatgcacatatacaccgattcacatattcaagtatgactcgattagttaa 145  Q
    |||||| ||||| |||||||||||||||| ||  ||||||||  ||||||||||||| |||||||| |||||| || ||||||| ||||||| ||   ||    
T  13438448 catacagttcaccttgttcaagtattcacaacggtcaccaaat-ttcaccaatgcacgtatacaccaattcacgtaatcaagtacgactcgactacccaa 13438546  T
Q  146 tcaataa--atgtatgcaatgttctagactcatctagatgcatgtggtgccata 197  Q
      |||||  ||| |||||||||||||||||| |||||||||||||||| |||||    
T  13438547 ataataaatatgcatgcaatgttctagactcttctagatgcatgtggtaccata 13438600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 270 - 331
Target Start/End: Complemental strand, 17320129 - 17320068
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatgg 331  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  17320129 ctatgtaaaagtacacctccttttacatttctcatatgactcgatatgactatgatgcatgg 17320068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 270 - 333
Target Start/End: Complemental strand, 4163736 - 4163673
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||    
T  4163736 ctatgtaaaagtacacctccttttacatttctcatatgactcgatatgacgatgatgcatggac 4163673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 270 - 333
Target Start/End: Original strand, 18968736 - 18968799
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||    
T  18968736 ctatgtaaaagtacacctccttttacatttctcatatgactcgatatgacaatgatgcatggac 18968799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 270 - 333
Target Start/End: Complemental strand, 43429089 - 43429026
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    |||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||    
T  43429089 ctatgtaaaagtacacttccttttacatttctcatatgactcgatatgactatgatgcatggac 43429026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 271 - 333
Target Start/End: Complemental strand, 21168268 - 21168206
Alignment:
Q  271 tatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  21168268 tatgtaaaaatacacctccttttacatttctcatatgactcaatatgattatgatgcatggac 21168206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 77 - 185
Target Start/End: Complemental strand, 19633550 - 19633441
Alignment:
Q  77 caatcaccaaaaattcaccaatgcacatatacaccgattcacatattcaagtatgactcgattagttaatcaat-aaatgtatgcaatgttctagactca 175  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||  |||| |||||||| |    ||| ||| | ||| |||||||||||||||||||    
T  19633550 caatcaccaaaatttcaccaatgcacatatacaccaattcacatatcaaagtttgactcgactcaccaatgaatcatatgcatgcaatgttctagactca 19633451  T
Q  176 tctagatgca 185  Q
    ||||||||||    
T  19633450 tctagatgca 19633441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 270 - 333
Target Start/End: Complemental strand, 4147229 - 4147166
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    ||||||||||||||| ||||||||| |||||||||||||||| ||||||| |||||||||||||    
T  4147229 ctatgtaaaagtacacctccttttaaatttctcatatgactcgatatgacgatgatgcatggac 4147166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 270 - 333
Target Start/End: Complemental strand, 14817248 - 14817185
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    |||||||||| || |||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  14817248 ctatgtaaaaatatatctccttttacatttctcatatgactcgatatgacgatgatgcatggac 14817185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 270 - 333
Target Start/End: Complemental strand, 25105517 - 25105454
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||  |||||||    
T  25105517 ctatgtaaaagtacacctccttttacatttctcatatgactcgatatgactatgaaacatggac 25105454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 270 - 333
Target Start/End: Complemental strand, 6230188 - 6230122
Alignment:
Q  270 ctatgtaaaagtacat---ctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    ||||||||||||||||   |||||||||||||||||||||||||| ||||||| |||||||||||||    
T  6230188 ctatgtaaaagtacatgacctccttttacatttctcatatgactcgatatgacgatgatgcatggac 6230122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 271 - 326
Target Start/End: Original strand, 34558515 - 34558570
Alignment:
Q  271 tatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatg 326  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||    
T  34558515 tatgtaaaagtacacctccttttacatttctcatatgactcgatatgacaatgatg 34558570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 270 - 309
Target Start/End: Original strand, 12020605 - 12020644
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgac 309  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  12020605 ctatgtaaaagtacacctccttttacatttctcatatgac 12020644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 270 - 309
Target Start/End: Original strand, 17203320 - 17203359
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgac 309  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  17203320 ctatgtaaaagtacacctccttttacatttctcatatgac 17203359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 151 - 217
Target Start/End: Complemental strand, 2548105 - 2548038
Alignment:
Q  151 aaatgtatgcaatgttctagactc--atctagatgcatgtggtgccatataggagtccgaagataattt 217  Q
    ||||||||||||||||||| ||||   |||||||||||||||| |||| ||||| ||||||||||||||    
T  2548105 aaatgtatgcaatgttctatactcttctctagatgcatgtggtaccat-taggattccgaagataattt 2548038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 11401079 - 11401124
Alignment:
Q  151 aaatgtatgcaatgttctagactcatctagatgcatgtggtgccat 196  Q
    ||||| |||||||||||||||||| |||||||||||||||| ||||    
T  11401079 aaatgcatgcaatgttctagactcttctagatgcatgtggtaccat 11401124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 191
Target Start/End: Original strand, 17385351 - 17385391
Alignment:
Q  151 aaatgtatgcaatgttctagactcatctagatgcatgtggt 191  Q
    ||||| |||||||||||||||||| ||||||||||||||||    
T  17385351 aaatgcatgcaatgttctagactcttctagatgcatgtggt 17385391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 191
Target Start/End: Complemental strand, 54040248 - 54040208
Alignment:
Q  151 aaatgtatgcaatgttctagactcatctagatgcatgtggt 191  Q
    ||||| |||||||||||||||||| ||||||||||||||||    
T  54040248 aaatgcatgcaatgttctagactcttctagatgcatgtggt 54040208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 191
Target Start/End: Complemental strand, 54049535 - 54049495
Alignment:
Q  151 aaatgtatgcaatgttctagactcatctagatgcatgtggt 191  Q
    ||||| |||||||||||||||||| ||||||||||||||||    
T  54049535 aaatgcatgcaatgttctagactcttctagatgcatgtggt 54049495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 155 - 217
Target Start/End: Complemental strand, 12254453 - 12254393
Alignment:
Q  155 gtatgcaatgttctagactcatctagatgcatgtggtgccatataggagtccgaagataattt 217  Q
    |||||||||||||||||||| |||| ||||||||||| ||  |||||| |||| |||||||||    
T  12254453 gtatgcaatgttctagactcttctaaatgcatgtggtacc--ataggattccggagataattt 12254393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 191
Target Start/End: Original strand, 6808921 - 6808955
Alignment:
Q  157 atgcaatgttctagactcatctagatgcatgtggt 191  Q
    |||||||||||||||||| ||||||||||||||||    
T  6808921 atgcaatgttctagactcttctagatgcatgtggt 6808955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 190
Target Start/End: Complemental strand, 25606974 - 25606936
Alignment:
Q  152 aatgtatgcaatgttctagactcatctagatgcatgtgg 190  Q
    |||| |||||||||||||||||| |||||||||||||||    
T  25606974 aatgcatgcaatgttctagactcctctagatgcatgtgg 25606936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 187
Target Start/End: Complemental strand, 31413952 - 31413915
Alignment:
Q  150 taaatgtatgcaatgttctagactcatctagatgcatg 187  Q
    |||||| |||||||||||||||||| ||||||||||||    
T  31413952 taaatgcatgcaatgttctagactcttctagatgcatg 31413915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 310
Target Start/End: Original strand, 15549172 - 15549212
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgact 310  Q
    |||||||||| |||| ||||||||||||||| |||||||||    
T  15549172 ctatgtaaaaatacacctccttttacatttcacatatgact 15549212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 15551168 - 15551132
Alignment:
Q  151 aaatgtatgcaatgttctagactcatctagatgcatg 187  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  15551168 aaatgcatgcaatgttctagactcttctagatgcatg 15551132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 191
Target Start/End: Original strand, 17391840 - 17391880
Alignment:
Q  151 aaatgtatgcaatgttctagactcatctagatgcatgtggt 191  Q
    ||||| ||||||||||| |||||| ||||||||||||||||    
T  17391840 aaatgcatgcaatgttcaagactcttctagatgcatgtggt 17391880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 191
Target Start/End: Complemental strand, 25105625 - 25105585
Alignment:
Q  151 aaatgtatgcaatgttctagactcatctagatgcatgtggt 191  Q
    ||||| |||||||||||||||||| ||||| ||||||||||    
T  25105625 aaatgcatgcaatgttctagactcctctaggtgcatgtggt 25105585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 62 - 319
Target Start/End: Original strand, 79238 - 79493
Alignment:
Q  62 ttcaagtattcacgacaatcaccaaaaattcaccaatgcacatatacaccgattcacatattcaagtatgactcgattagttaatcaataaatgtatgca 161  Q
    ||||||||||||| | | |||||||| |||| |||||||||| | |||| ||||||| ||| |||||||||||| |||    ||| || |||||  ||||    
T  79238 ttcaagtattcacaatagtcaccaaacattcgccaatgcacagaaacactgattcacgtatccaagtatgactcaattcaccaattaacaaatgcgtgca 79337  T
Q  162 atgttctagactcatctagatgcatgtggtgccatataggagtccgaagataattt-acagtttgaatacacactcacgtaagagtacacctcctcccat 260  Q
    |||||||||| |||||||||||||| |||| ||||    || |||||||| ||||| || |||||||  ||||| |||||||||||  ||||||| | |     
T  79338 atgttctagattcatctagatgcatctggtaccattc--gattccgaagacaattttaccgtttgaacccacacccacgtaagagtg-acctccttctac 79434  T
Q  261 gtatttcacctatgtaaaagtacatctccttttacatttctcatatgactcaatatgac 319  Q
    |||||| |||||||| | |||||| ||||||||||||||||||||||||||||||||||    
T  79435 gtattttacctatgtgatagtacacctccttttacatttctcatatgactcaatatgac 79493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 45 - 196
Target Start/End: Original strand, 1560297 - 1560448
Alignment:
Q  45 gcatacaattcactttgttcaagtattcacgacaatcaccaaaaattcaccaatgcacatatacaccgattcacatattcaagtatgactcgattagtta 144  Q
    ||||||||||||||||  ||||| |||||| |||||||||||| |||||||||||||||||||||| ||||  ||||||||||||||||||||||  | |    
T  1560297 gcatacaattcacttttctcaagaattcacaacaatcaccaaacattcaccaatgcacatatacactgatttgcatattcaagtatgactcgattcatca 1560396  T
Q  145 atcaataaatgtatgcaatgttctagactcatctagatgcatgtggtgccat 196  Q
    || || || ||  ||||||||||||||||| |||| || |||||||| ||||    
T  1560397 attaacaattgcttgcaatgttctagactcttctatatacatgtggtaccat 1560448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 148 - 333
Target Start/End: Complemental strand, 5486007 - 5485823
Alignment:
Q  148 aataaatgtatgcaatgttctagactcatctagatgcatgtggtgccatataggagtccgaagataattt-acagtttgaatacacactcacgtaagagt 246  Q
    ||||| || |||||||||||||| ||| ||||| |||||||||| | ||  |  | ||| |||||||||| || ||  |||| |||||  |||||| |||    
T  5486007 aataagtgcatgcaatgttctagtctcttctaggtgcatgtggtacaattga--attcctaagataattttaccgtacgaatccacaccaacgtaaaagt 5485910  T
Q  247 acacctcctcccatgtatttcacctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    | |||||||  ||||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  5485909 atacctcctttcatgtatttgacctatgtaaaagtacacatccttttacatttctcatatgactcaatatgactatgatgcatggac 5485823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 265 - 333
Target Start/End: Complemental strand, 4173230 - 4173162
Alignment:
Q  265 ttcacctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  4173230 ttcacctatgtaaaagtacatctccttttacacttctcatatgactcaatatgactatgatgcatggac 4173162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 265 - 333
Target Start/End: Complemental strand, 4228839 - 4228771
Alignment:
Q  265 ttcacctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  4228839 ttcacctatgtaaaagtacacctccttttacacttctcatatgactcaatatgactatgatgcatggac 4228771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 265 - 333
Target Start/End: Complemental strand, 29162063 - 29161995
Alignment:
Q  265 ttcacctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  29162063 ttcaactatgtaaaagtacatcttcttttacatttctcatatgactcaatatgactatgatgcatggac 29161995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 270 - 333
Target Start/End: Original strand, 32350720 - 32350783
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32350720 ctatgtaaaagtgcatctccttttacatttctcatatgactcaatatgactatgatgcatggac 32350783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 270 - 333
Target Start/End: Complemental strand, 15006203 - 15006140
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  15006203 ctatgtaaaagtacacctccttttacatttctcatatgactcgatatgactatgatgcatggac 15006140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 265 - 333
Target Start/End: Complemental strand, 11374404 - 11374336
Alignment:
Q  265 ttcacctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    |||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  11374404 ttcaactatgtaaaaggacacctccttttacatttctcatatgactcaatatgactatgatgtatggac 11374336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 67 - 197
Target Start/End: Complemental strand, 19729127 - 19728996
Alignment:
Q  67 gtattcacgacaatcaccaaaaattcaccaatgcacatatacaccgattcacatattcaagt-atgactcgattagttaatcaataaatgtatgcaatgt 165  Q
    |||| ||| ||||||||||||| || | |||| |||||| |||||||||||||||||||||| | ||||||| |    ||| ||||| || |||||||||    
T  19729127 gtatccacaacaatcaccaaaagtttagcaatacacatacacaccgattcacatattcaagtaaagactcgactcaccaattaataagtgcatgcaatgt 19729028  T
Q  166 tctagactcatctagatgcatgtggtgccata 197  Q
    ||||||||| |||||||||||||||| |||||    
T  19729027 tctagactcttctagatgcatgtggtaccata 19728996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 270 - 333
Target Start/End: Original strand, 29604207 - 29604270
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||    
T  29604207 ctatgtaaaagtacacctccttttacatttctcatatgactcgatatgacgatgatgcatggac 29604270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 265 - 329
Target Start/End: Complemental strand, 17375305 - 17375241
Alignment:
Q  265 ttcacctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcat 329  Q
    |||| ||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||    
T  17375305 ttcaactatgtaaaagtagacctccttttacatttctcatatgactcaatatgaatatgatgcat 17375241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 270 - 333
Target Start/End: Complemental strand, 18631163 - 18631100
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    ||||||||||| ||| ||||||||||||||| |||||||||| ||||||| |||||||||||||    
T  18631163 ctatgtaaaagaacacctccttttacatttcacatatgactcgatatgacgatgatgcatggac 18631100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 157 - 254
Target Start/End: Original strand, 24217359 - 24217457
Alignment:
Q  157 atgcaatgttctagactcatctagatgcatgtggtgccatataggagtccgaagataa-tttacagt-ttgaatacacactcacgtaagagtacacctcc 254  Q
    |||||||||||||||||| |||| ||||||||||| ||| |||||| ||   |||||| |||||||| || ||| |||||||||||||||||||||||||    
T  24217359 atgcaatgttctagactcttctaaatgcatgtggtacca-ataggattctatagataattttacagtattaaatccacactcacgtaagagtacacctcc 24217457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 137
Target Start/End: Original strand, 10973245 - 10973292
Alignment:
Q  90 ttcaccaatgcacatatacaccgattcacatattcaagtatgactcga 137  Q
    ||||||||||||| |||||||| ||||||||| |||||||||||||||    
T  10973245 ttcaccaatgcacgtatacaccaattcacataatcaagtatgactcga 10973292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 12975025 - 12975074
Alignment:
Q  148 aataaatgtatgcaatgttctagactcatctagatgcatgtggtgccata 197  Q
    |||||||||||||||||||||||||   |||||||||||||||| |||||    
T  12975025 aataaatgtatgcaatgttctagacatttctagatgcatgtggtaccata 12975074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 270 - 309
Target Start/End: Original strand, 21621781 - 21621820
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgac 309  Q
    ||||||||||||||| ||||||||||||||| ||||||||    
T  21621781 ctatgtaaaagtacacctccttttacatttcacatatgac 21621820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 270 - 309
Target Start/End: Complemental strand, 22363726 - 22363687
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgac 309  Q
    ||||||||||| |||||||||||||||||| |||||||||    
T  22363726 ctatgtaaaagaacatctccttttacatttttcatatgac 22363687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 353
Target Start/End: Complemental strand, 14875023 - 14874942
Alignment:
Q  272 atgtaaaagtacatctccttttacatttctcatatgactcaatatgactatg-atgcatggacttcaagtaagactcgacaat 353  Q
    ||||||||||| | |||| ||||||||  ||||| ||||||| |||| |||| ||||||||||||||||  ||||||||||||    
T  14875023 atgtaaaagtaaacctccatttacattcttcataagactcaacatgaatatgaatgcatggacttcaag-cagactcgacaat 14874942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 309
Target Start/End: Original strand, 25918331 - 25918373
Alignment:
Q  267 cacctatgtaaaagtacatctccttttacatttctcatatgac 309  Q
    |||||||||||||||||| ||||||||||||||| || |||||    
T  25918331 cacctatgtaaaagtacacctccttttacatttcacaaatgac 25918373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 333
Target Start/End: Complemental strand, 31162403 - 31162373
Alignment:
Q  303 atatgactcaatatgactatgatgcatggac 333  Q
    |||||||||||||||||||||||||||||||    
T  31162403 atatgactcaatatgactatgatgcatggac 31162373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 191
Target Start/End: Complemental strand, 12466221 - 12466181
Alignment:
Q  151 aaatgtatgcaatgttctagactcatctagatgcatgtggt 191  Q
    ||||| |||||||||||||||||| |||||||| |||||||    
T  12466221 aaatgcatgcaatgttctagactcttctagatgtatgtggt 12466181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 16374881 - 16374917
Alignment:
Q  151 aaatgtatgcaatgttctagactcatctagatgcatg 187  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  16374881 aaatgcatgcaatgttctagactcttctagatgcatg 16374917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 330
Target Start/End: Original strand, 16375036 - 16375064
Alignment:
Q  302 catatgactcaatatgactatgatgcatg 330  Q
    |||||||||||||||||||||||||||||    
T  16375036 catatgactcaatatgactatgatgcatg 16375064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 19627830 - 19627866
Alignment:
Q  151 aaatgtatgcaatgttctagactcatctagatgcatg 187  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  19627830 aaatgcatgcaatgttctagactcttctagatgcatg 19627866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 22595164 - 22595128
Alignment:
Q  151 aaatgtatgcaatgttctagactcatctagatgcatg 187  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  22595164 aaatgcatgcaatgttctagactcttctagatgcatg 22595128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 31162559 - 31162523
Alignment:
Q  151 aaatgtatgcaatgttctagactcatctagatgcatg 187  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  31162559 aaatgcatgcaatgttctagactcttctagatgcatg 31162523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 35010984 - 35010948
Alignment:
Q  151 aaatgtatgcaatgttctagactcatctagatgcatg 187  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  35010984 aaatgcatgcaatgttctagactcttctagatgcatg 35010948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 265 - 333
Target Start/End: Original strand, 21108171 - 21108239
Alignment:
Q  265 ttcacctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  21108171 ttcaactatgtaaaagtacacctccttttacatttctcatatgactcaatatgactatgatgcatggac 21108239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 270 - 333
Target Start/End: Complemental strand, 26561340 - 26561277
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26561340 ctatgtaaaagtacacctccttttacatttctcatatgactcaatatgattatgatgcatggac 26561277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 270 - 333
Target Start/End: Original strand, 6455319 - 6455382
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    ||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||    
T  6455319 ctatgtaaaagtacacctccttttacatttctcatatgactcgttatgactatgatgcatggac 6455382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 270 - 333
Target Start/End: Original strand, 29912698 - 29912761
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||    
T  29912698 ctatgtaaaagtacacctccttttacatttctcatatgactcgatatgacgatgatgcatggac 29912761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 271 - 333
Target Start/End: Complemental strand, 5622981 - 5622919
Alignment:
Q  271 tatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  5622981 tatgtaaaaatacacctccttttacatttctcatatgactcaatatgattatgatgcatggac 5622919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 157 - 351
Target Start/End: Original strand, 37278075 - 37278276
Alignment:
Q  157 atgcaatgttctagactcatctagatgcatgtggtgccatataggagtccgaagataattt-acagt-ttgaatacacactcacgtaagagtacacctcc 254  Q
    |||||||||||||||||| | ||||| || ||||| ||| || ||| |||| ||||||||| ||||  |||||| ||||| |||||||||||||||||||    
T  37278075 atgcaatgttctagactcttttagatacacgtggtacca-attggattccggagataattttacagcattgaatccacacccacgtaagagtacacctcc 37278173  T
Q  255 tcccatgtatttcac-----ctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatga-tgcatggacttcaagtaagactcg 348  Q
     |  | |||||||||     | || ||||||||||  |||  |||||||  ||||| ||||||| |||||||||| ||||||||||||||||||||||||    
T  37278174 acttacgtatttcactaacgcaatataaaagtacacgtccagttacattcgtcataagactcaacatgactatgaatgcatggacttcaagtaagactcg 37278273  T
Q  349 aca 351  Q
    |||    
T  37278274 aca 37278276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 97 - 217
Target Start/End: Original strand, 25340876 - 25340995
Alignment:
Q  97 atgcacatatacaccgattcacatattcaagtatgactcgattagttaatcaataaatgtatgcaatgttctagactcatctagatgcatgtggtgccat 196  Q
    ||||||||| ||||| ||| |||||| |||||||||||||| |    ||| || ||||| ||||||||||||||||||||||||||||||||||| ||||    
T  25340876 atgcacatacacaccaattgacatatccaagtatgactcgactcaccaattaacaaatgcatgcaatgttctagactcatctagatgcatgtggtaccat 25340975  T
Q  197 ataggagtccgaagataattt 217  Q
     ||||| |||  |||||||||    
T  25340976 -taggattccagagataattt 25340995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 270 - 333
Target Start/End: Original strand, 24082755 - 24082818
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    ||||||||||||||| |||||||||||||||||||| ||||| ||||||| |||||||||||||    
T  24082755 ctatgtaaaagtacacctccttttacatttctcatacgactcgatatgacgatgatgcatggac 24082818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 197
Target Start/End: Complemental strand, 19318220 - 19318119
Alignment:
Q  96 aatgcacatatacaccgattcacatattcaagtatgactcgattagttaatcaataaatgtatgcaatgttctagactcatctagatgcatgtggtgcca 195  Q
    ||||||| |||||||| || |||||| ||||||| ||||||| |    ||  |||||||| ||| |||||||||||||| |||||||||||||||| |||    
T  19318220 aatgcacgtatacaccaatacacataatcaagtacgactcgactcaccaaataataaatgcatgtaatgttctagactcttctagatgcatgtggtacca 19318121  T
Q  196 ta 197  Q
    ||    
T  19318120 ta 19318119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 90 - 137
Target Start/End: Original strand, 19266820 - 19266867
Alignment:
Q  90 ttcaccaatgcacatatacaccgattcacatattcaagtatgactcga 137  Q
    |||||||| |||| |||||||| ||||||||| |||||||||||||||    
T  19266820 ttcaccaaagcacgtatacaccaattcacataatcaagtatgactcga 19266867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 156 - 191
Target Start/End: Complemental strand, 33627929 - 33627894
Alignment:
Q  156 tatgcaatgttctagactcatctagatgcatgtggt 191  Q
    ||||||||||||||||||||| ||||||||||||||    
T  33627929 tatgcaatgttctagactcatgtagatgcatgtggt 33627894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 190
Target Start/End: Complemental strand, 18532458 - 18532420
Alignment:
Q  152 aatgtatgcaatgttctagactcatctagatgcatgtgg 190  Q
    |||| |||||||||||||||||| |||||||||||||||    
T  18532458 aatgcatgcaatgttctagactcctctagatgcatgtgg 18532420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 190
Target Start/End: Complemental strand, 22055422 - 22055384
Alignment:
Q  152 aatgtatgcaatgttctagactcatctagatgcatgtgg 190  Q
    |||| |||||||||||||||||| |||||||||||||||    
T  22055422 aatgcatgcaatgttctagactcctctagatgcatgtgg 22055384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 191
Target Start/End: Complemental strand, 14343549 - 14343509
Alignment:
Q  151 aaatgtatgcaatgttctagactcatctagatgcatgtggt 191  Q
    ||||| ||||||||||| |||||| ||||||||||||||||    
T  14343549 aaatgcatgcaatgttccagactcttctagatgcatgtggt 14343509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 16837050 - 16837014
Alignment:
Q  151 aaatgtatgcaatgttctagactcatctagatgcatg 187  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  16837050 aaatgcatgcaatgttctagactcttctagatgcatg 16837014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 34937951 - 34937987
Alignment:
Q  151 aaatgtatgcaatgttctagactcatctagatgcatg 187  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  34937951 aaatgcatgcaatgttctagactcttctagatgcatg 34937987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 265 - 333
Target Start/End: Original strand, 33395960 - 33396028
Alignment:
Q  265 ttcacctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33395960 ttcaactatgtaaaagtacacctccttttacatttctcatatgactcaatatgactatgatgcatggac 33396028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 271 - 333
Target Start/End: Complemental strand, 49998868 - 49998806
Alignment:
Q  271 tatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    ||||||||||| || |||||||||||||||||||||||||| ||||||| |||||||||||||    
T  49998868 tatgtaaaagtgcacctccttttacatttctcatatgactcgatatgacaatgatgcatggac 49998806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 270 - 329
Target Start/End: Complemental strand, 40437823 - 40437764
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcat 329  Q
    |||||||||||||||  |||||||||||||||||||| |||| |||||||||||||||||    
T  40437823 ctatgtaaaagtacacatccttttacatttctcatattactcgatatgactatgatgcat 40437764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 270 - 333
Target Start/End: Original strand, 46144415 - 46144478
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    ||||||||||||||| ||||||||||||||||||||||| |  ||||||| || ||||||||||    
T  46144415 ctatgtaaaagtacacctccttttacatttctcatatgatttgatatgacgataatgcatggac 46144478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 270 - 309
Target Start/End: Original strand, 17022213 - 17022252
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgac 309  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  17022213 ctatgtaaaagtacacctccttttacatttctcatatgac 17022252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 279 - 330
Target Start/End: Original strand, 52399275 - 52399326
Alignment:
Q  279 agtacatctccttttacatttctcatatgactcaatatgactatgatgcatg 330  Q
    |||||| |||||||||||||||||||| ||||| ||||||| ||||||||||    
T  52399275 agtacacctccttttacatttctcatacgactcgatatgacgatgatgcatg 52399326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 21199282 - 21199241
Alignment:
Q  150 taaatgtatgcaatgttctagactcatctagatgcatgtggt 191  Q
    |||||| |||||||||||||||||| ||||||||||||||||    
T  21199282 taaatgcatgcaatgttctagactcgtctagatgcatgtggt 21199241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 20252698 - 20252734
Alignment:
Q  151 aaatgtatgcaatgttctagactcatctagatgcatg 187  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  20252698 aaatgcatgcaatgttctagactcttctagatgcatg 20252734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 33395840 - 33395876
Alignment:
Q  151 aaatgtatgcaatgttctagactcatctagatgcatg 187  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  33395840 aaatgcatgcaatgttctagactcttctagatgcatg 33395876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 270 - 333
Target Start/End: Original strand, 25132827 - 25132890
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  25132827 ctatgtaaaagtacacctccttttacatttctcatatgactcgatatgactatgatgcatggac 25132890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 223 - 310
Target Start/End: Complemental strand, 34135865 - 34135778
Alignment:
Q  223 ttgaatacacactcacgtaagagtacacctcctcccatgtatttcacctatgtaaaagtacatctccttttacatttctcatatgact 310  Q
    |||||| ||||| || ||||||||||||||||||  | |||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  34135865 ttgaatccacacccaagtaagagtacacctcctcttacgtatttcacctatgtaaaagtacacctccttttacattcctcatatgact 34135778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 266 - 327
Target Start/End: Original strand, 20272008 - 20272069
Alignment:
Q  266 tcacctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgc 327  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  20272008 tcacctatgtaaaagtacacctccttttacatttctcatatgactcaatatgactgtgatgc 20272069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 273 - 333
Target Start/End: Original strand, 6093474 - 6093534
Alignment:
Q  273 tgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    ||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||    
T  6093474 tgtaaaagtacaaacccttttacatttctcatatgactcaatatgactatgatgcatggac 6093534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 270 - 333
Target Start/End: Original strand, 19660978 - 19661041
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    ||||||||||||||| ||||||||||||||| |||||||||| ||||||| |||||||||||||    
T  19660978 ctatgtaaaagtacacctccttttacatttcacatatgactcgatatgacgatgatgcatggac 19661041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 270 - 333
Target Start/End: Original strand, 24881247 - 24881310
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    ||||||||||||||| |||||||||||||||||| ||||| | ||||||| |||||||||||||    
T  24881247 ctatgtaaaagtacacctccttttacatttctcaaatgacccgatatgacgatgatgcatggac 24881310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 90 - 198
Target Start/End: Original strand, 18994703 - 18994810
Alignment:
Q  90 ttcaccaatgcacatatacaccgattcacatattcaagtatgactcgatt-agttaatcaataaatgtatgcaatgttctagactcatctagatgcatgt 188  Q
    ||||||||||||| |||||||| ||||| ||| |||||||||||| || | |   |||||   ||||||||||||| ||||||||| |||||||||||||    
T  18994703 ttcaccaatgcacgtatacaccaattcatataatcaagtatgacttgactcaccaaatcac--aatgtatgcaatgctctagactcttctagatgcatgt 18994800  T
Q  189 ggtgccatat 198  Q
    ||| ||||||    
T  18994801 ggtaccatat 18994810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 24533319 - 24533278
Alignment:
Q  150 taaatgtatgcaatgttctagactcatctagatgcatgtggt 191  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  24533319 taaatggatgcaatgttctagactcatctagatgcatgtggt 24533278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 405
Target Start/End: Complemental strand, 34135777 - 34135698
Alignment:
Q  328 atggacttcaagtaagactcgacaatccgtctaacaccaactatataatcac--aaacaatgtaaaagtacacctccaat 405  Q
    ||||||||||| |||||||| ||||| |  |||||||||||||||||| |||  || |||| ||||| ||||||||||||    
T  34135777 atggacttcaaataagactcaacaatgcacctaacaccaactatataaccaccaaagcaatataaaactacacctccaat 34135698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 270 - 309
Target Start/End: Complemental strand, 9782455 - 9782416
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgac 309  Q
    ||||||||||||||| ||||||||||||||| ||||||||    
T  9782455 ctatgtaaaagtacacctccttttacatttcacatatgac 9782416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 270 - 309
Target Start/End: Complemental strand, 40641825 - 40641786
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgac 309  Q
    ||||||||||||||| ||||||||||||||| ||||||||    
T  40641825 ctatgtaaaagtacacctccttttacatttcacatatgac 40641786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 190
Target Start/End: Complemental strand, 24343037 - 24342999
Alignment:
Q  152 aatgtatgcaatgttctagactcatctagatgcatgtgg 190  Q
    |||| |||||||||||||||||| |||||||||||||||    
T  24343037 aatgcatgcaatgttctagactcctctagatgcatgtgg 24342999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 187
Target Start/End: Complemental strand, 45619803 - 45619705
Alignment:
Q  90 ttcaccaatgcacatatacaccgattcacatattcaagtatgactcgattagttaatcaat-aaatgtatgcaatgttctagactcatctagatgcatg 187  Q
    |||||||||||||| || |||| | |||| ||||||| |||||| | |||  | || || | ||||| |||||||||||||||||| ||||||||||||    
T  45619803 ttcaccaatgcacaaattcaccaagtcacgtattcaattatgacacaattcatcaaccattcaaatgcatgcaatgttctagactcttctagatgcatg 45619705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 7513723 - 7513687
Alignment:
Q  151 aaatgtatgcaatgttctagactcatctagatgcatg 187  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  7513723 aaatgcatgcaatgttctagactcttctagatgcatg 7513687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 22331166 - 22331202
Alignment:
Q  151 aaatgtatgcaatgttctagactcatctagatgcatg 187  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  22331166 aaatgcatgcaatgttctagactcttctagatgcatg 22331202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 42180070 - 42180034
Alignment:
Q  151 aaatgtatgcaatgttctagactcatctagatgcatg 187  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  42180070 aaatgcatgcaatgttctagactcttctagatgcatg 42180034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1204 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold1204
Description:

Target: scaffold1204; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 271 - 333
Target Start/End: Complemental strand, 1759 - 1697
Alignment:
Q  271 tatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1759 tatgtaagagtacacctccttttacatttctcatatgactcaatatgactatgatgcatggac 1697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 265 - 333
Target Start/End: Complemental strand, 15448 - 15380
Alignment:
Q  265 ttcacctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    |||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||| |||||||||    
T  15448 ttcacctatgtaaaagtacacccccttttacatttctcatatggctcaatatgactatgttgcatggac 15380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 191
Target Start/End: Complemental strand, 15552 - 15512
Alignment:
Q  151 aaatgtatgcaatgttctagactcatctagatgcatgtggt 191  Q
    ||||| |||||||||||||||||| ||||||||||||||||    
T  15552 aaatgcatgcaatgttctagactcttctagatgcatgtggt 15512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 91 - 191
Target Start/End: Complemental strand, 26138 - 26038
Alignment:
Q  91 tcaccaatgcacatatacaccgattcacatattcaagtatgactcgattagttaatcaataaatgtatgcaatgttctagactcatctagatgcatgtgg 190  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||| |    |||  ||||||| |||| ||||||||||||| |||||||||||||||    
T  26138 tcaccaatgcacatatacaccgattcacataatcaagtaagactcgactcaccaatagataaatgcatgctatgttctagactcttctagatgcatgtgg 26039  T
Q  191 t 191  Q
    |    
T  26038 t 26038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0357 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0357
Description:

Target: scaffold0357; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 270 - 333
Target Start/End: Original strand, 6379 - 6442
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||    
T  6379 ctatgtaaaagtacacctccttttacatttctcatatgactcgatatgacgatgatgcatggac 6442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0253 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0253
Description:

Target: scaffold0253; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 270 - 333
Target Start/End: Original strand, 9996 - 10059
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||    
T  9996 ctatgtaaaagtacacctccttttacatttctcatatgactcgatatgacgatgatgcatggac 10059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0253; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 270 - 333
Target Start/End: Original strand, 19421 - 19484
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||    
T  19421 ctatgtaaaagtacacctccttttacatttctcatatgactcgatatgacgatgatgcatggac 19484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 266 - 333
Target Start/End: Complemental strand, 21638 - 21571
Alignment:
Q  266 tcacctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    |||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  21638 tcacctatgtaaaattacacctccttttagatttctcatatgactcaatatgactataatgcatggac 21571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 270 - 333
Target Start/End: Original strand, 1226 - 1289
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    ||||||||||||| | |||||||||||||||||||||||||  ||||||| |||||||||||||    
T  1226 ctatgtaaaagtaaacctccttttacatttctcatatgactagatatgacgatgatgcatggac 1289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 270 - 333
Target Start/End: Original strand, 12084 - 12147
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||    
T  12084 ctatgtaaaagtacacctccttttacatttctcatatgactcgatatgacaatgatgcatggac 12147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 270 - 333
Target Start/End: Complemental strand, 198904 - 198841
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||    
T  198904 ctatgtaaaagtacatctccttttatatttctcatatgactcgatatgacaatgatgcatggac 198841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 271 - 333
Target Start/End: Complemental strand, 98705 - 98643
Alignment:
Q  271 tatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||    
T  98705 tatgtaaaagtacacctccttttacatttctcatatgactcgatatgacgatgatgcatggac 98643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 265 - 333
Target Start/End: Complemental strand, 10913 - 10846
Alignment:
Q  265 ttcacctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    |||| |||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10913 ttcaactatgttaaagtacacctccttttacatt-ctcatatgactcaatatgactatgatgcatggac 10846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0387 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0387
Description:

Target: scaffold0387; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 270 - 333
Target Start/End: Complemental strand, 2490 - 2427
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||  ||||||||||||    
T  2490 ctatgtaaaagtacatctccttttaaatttctcatatgactcgatatgacggtgatgcatggac 2427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 270 - 333
Target Start/End: Complemental strand, 1621 - 1558
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    ||||||||||||||| || ||||||||||||||||||||||| ||||||| |||||||||||||    
T  1621 ctatgtaaaagtacacctgcttttacatttctcatatgactcgatatgacaatgatgcatggac 1558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 90 - 217
Target Start/End: Complemental strand, 101215 - 101086
Alignment:
Q  90 ttcaccaatgcacatatacaccga-ttcacatattcaa--gtatgactcgattagttaatcaataaatgtatgcaatgttctagactcatctagatgcat 186  Q
    |||||||||||||||| ||||| | ||||||||| |||  ||||||||||| |    ||| |||||||| ||||||||||||||||||||||||||||||    
T  101215 ttcaccaatgcacatacacaccaaattcacatatccaaaagtatgactcgacttaccaattaataaatgcatgcaatgttctagactcatctagatgcat 101116  T
Q  187 gtggtgccatataggagtccgaagataattt 217  Q
    ||||| |||| ||||| || | |||||||||    
T  101115 gtggtaccat-taggattcaggagataattt 101086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 265 - 332
Target Start/End: Original strand, 11226 - 11293
Alignment:
Q  265 ttcacctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatgga 332  Q
    |||| |||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||| ||||    
T  11226 ttcaactatgtaaaagtacacatccttttacatttctcatatgactcgatatgactatgatgcttgga 11293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 303 - 404
Target Start/End: Original strand, 23029 - 23133
Alignment:
Q  303 atatgactcaatatgactatgatgcatggac-ttcaagtaagactcgacaatccgtctaacaccaactatataatcac--aaacaatgtaaaagtacacc 399  Q
    |||||||||||||||||||||||||||| || | ||||| |||||||||||| || ||||||||||| | |||| |||  ||  ||||||||||||||||    
T  23029 atatgactcaatatgactatgatgcatgaacatacaagtgagactcgacaatgcgcctaacaccaacaacataaccaccaaataaatgtaaaagtacacc 23128  T
Q  400 tccaa 404  Q
    |||||    
T  23129 tccaa 23133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 272 - 333
Target Start/End: Complemental strand, 19320 - 19259
Alignment:
Q  272 atgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    ||||||||||||| |||||||||||||||||||||||||| || |||| |||||||||||||    
T  19320 atgtaaaagtacacctccttttacatttctcatatgactcgatgtgacgatgatgcatggac 19259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 272 - 333
Target Start/End: Complemental strand, 23585 - 23524
Alignment:
Q  272 atgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    |||||||| |||| |||||||||||||||||||||||||| ||||||| |||||||||||||    
T  23585 atgtaaaattacacctccttttacatttctcatatgactcgatatgacgatgatgcatggac 23524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 272 - 333
Target Start/End: Complemental strand, 28896 - 28835
Alignment:
Q  272 atgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    ||||||||||||| |||||||||||||||||||||||||| || |||| |||||||||||||    
T  28896 atgtaaaagtacacctccttttacatttctcatatgactcgatgtgacgatgatgcatggac 28835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 270 - 329
Target Start/End: Complemental strand, 25491 - 25432
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcat 329  Q
    |||||||||| |||| |||||||||||||||||||||||||| ||||||| |||||||||    
T  25491 ctatgtaaaattacacctccttttacatttctcatatgactcgatatgacaatgatgcat 25432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0175 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 270 - 333
Target Start/End: Complemental strand, 6706 - 6643
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    |||||||||| |||| ||||||||||||||| |||||||||| ||||||| |||||||||||||    
T  6706 ctatgtaaaaatacacctccttttacatttcacatatgactcgatatgacaatgatgcatggac 6643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 270 - 333
Target Start/End: Complemental strand, 106158 - 106095
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    |||||| |||||||| ||||||||||||||| |||||||||| ||||||| |||||||||||||    
T  106158 ctatgttaaagtacacctccttttacatttcacatatgactcgatatgacgatgatgcatggac 106095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 270 - 333
Target Start/End: Complemental strand, 64012 - 63949
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgactcaatatgactatgatgcatggac 333  Q
    ||||||||||||||| ||||||||||||||| |||||||||  ||||||| |||||||||||||    
T  64012 ctatgtaaaagtacacctccttttacatttcacatatgacttgatatgacgatgatgcatggac 63949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0412 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0412
Description:

Target: scaffold0412; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 90 - 197
Target Start/End: Original strand, 1624 - 1730
Alignment:
Q  90 ttcaccaatgcacatatacaccgattcacatattcaagtatgactcga-ttagttaatcaataaatgtatgcaatgttctagactcatctagatgcatgt 188  Q
    |||||||||||||||||||||| ||||||||| ||| ||||||||| | | | | |||||   |||||||| ||||||| |||||| |||||||||||||    
T  1624 ttcaccaatgcacatatacaccaattcacatagtcatgtatgactcaactcactgaatca--caatgtatgaaatgttcaagactcttctagatgcatgt 1721  T
Q  189 ggtgccata 197  Q
    ||| |||||    
T  1722 ggtaccata 1730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 270 - 309
Target Start/End: Original strand, 68148 - 68187
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatgac 309  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  68148 ctatgtaaaagtacacctccttttacatttctcatatgac 68187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 196
Target Start/End: Complemental strand, 256082 - 256037
Alignment:
Q  151 aaatgtatgcaatgttctagactcatctagatgcatgtggtgccat 196  Q
    ||||| |||||||||||||||||| |||||||||||| ||| ||||    
T  256082 aaatgcatgcaatgttctagactcttctagatgcatgcggtaccat 256037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 5847 - 5896
Alignment:
Q  148 aataaatgtatgcaatgttctagactcatctagatgcatgtggtgccata 197  Q
    |||||||| |||||||||||||||| | |||||||||||||||| |||||    
T  5847 aataaatgcatgcaatgttctagacccttctagatgcatgtggtaccata 5896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 302 - 333
Target Start/End: Original strand, 12366 - 12397
Alignment:
Q  302 catatgactcaatatgactatgatgcatggac 333  Q
    ||||||||||||||||||||||||||||||||    
T  12366 catatgactcaatatgactatgatgcatggac 12397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 191
Target Start/End: Original strand, 11471 - 11573
Alignment:
Q  90 ttcaccaatgcacatatacaccgattcacatattcaagtatgactcgattagtt-aatcaataaatgtatgcaatgttctagactcatctagatgcatgt 188  Q
    ||||||||||||||||| |||| | ||||||| ||||||||||| || ||     ||| |  ||||| ||||||| |||||||||| |||||||||||||    
T  11471 ttcaccaatgcacatattcaccaagtcacatagtcaagtatgacacgttttcaccaattatcaaatgcatgcaatattctagactcttctagatgcatgt 11570  T
Q  189 ggt 191  Q
    |||    
T  11571 ggt 11573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 308
Target Start/End: Original strand, 29752 - 29790
Alignment:
Q  270 ctatgtaaaagtacatctccttttacatttctcatatga 308  Q
    ||||||||||||||| ||| |||||||||||||||||||    
T  29752 ctatgtaaaagtacacctcattttacatttctcatatga 29790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 217
Target Start/End: Original strand, 33830 - 33897
Alignment:
Q  151 aaatgtatgcaatgttctagactc--atctagatgcatgtggtgccatataggagtccgaagataattt 217  Q
    ||||| ||||||||||||||||||   |||||||||||||||| |||| ||||| |||| |||||||||    
T  33830 aaatgcatgcaatgttctagactcttctctagatgcatgtggtaccat-taggattccggagataattt 33897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1869 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1869
Description:

Target: scaffold1869; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 801 - 860
Alignment:
Q  157 atgcaatgttctagactcatctagatgcatgtggtgccatataggagtccgaagataattt 217  Q
    ||||||||||||| |||| ||||||||||| ||||  || |||||| ||||||||||||||    
T  801 atgcaatgttctaaactcttctagatgcatatggtagca-ataggattccgaagataattt 860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0396 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0396
Description:

Target: scaffold0396; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 207 - 171
Alignment:
Q  151 aaatgtatgcaatgttctagactcatctagatgcatg 187  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  207 aaatgcatgcaatgttctagactcttctagatgcatg 171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 26806 - 26842
Alignment:
Q  151 aaatgtatgcaatgttctagactcatctagatgcatg 187  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  26806 aaatgcatgcaatgttctagactcttctagatgcatg 26842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 27821 - 27857
Alignment:
Q  151 aaatgtatgcaatgttctagactcatctagatgcatg 187  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  27821 aaatgcatgcaatgttctagactcttctagatgcatg 27857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 39817 - 39853
Alignment:
Q  151 aaatgtatgcaatgttctagactcatctagatgcatg 187  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  39817 aaatgcatgcaatgttctagactcttctagatgcatg 39853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 20219 - 20255
Alignment:
Q  151 aaatgtatgcaatgttctagactcatctagatgcatg 187  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  20219 aaatgcatgcaatgttctagactcttctagatgcatg 20255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University