View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6971_high_6 (Length: 363)
Name: NF6971_high_6
Description: NF6971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6971_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 17 - 351
Target Start/End: Original strand, 34655077 - 34655415
Alignment:
| Q |
17 |
catatttcttgatccttaaaacacttccttttgctccaatatttgccatgtagagtttcttcttaataaaagaacgcgtcccagttttctcatttgcaat |
116 |
Q |
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| T |
34655077 |
catatttcttgatccttaaaacacttccttttgctccaatatttgccatgtagagtttctttttaataaaagaacgcgtcccagttttctcatttgcaat |
34655176 |
T |
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| Q |
117 |
atctaaccatataatcatcattcacatcgttagaacaagaaccttgattcaaaagtaaatagatacgaaaaacgcaaacaaagaaaacacaacattttat |
216 |
Q |
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| T |
34655177 |
atctaaccatataatcatcattcacatcgttagaacaagaaccttgattcaaaagtaaacagatacgaaaaacgcaaacaaagaaaacacaacattttat |
34655276 |
T |
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| Q |
217 |
ctcagggttcggccagttgtgtctacgttctctgactacattgatattc----tattattcaagcttaggattacttttacaaatttacttcaaatgtta |
312 |
Q |
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| T |
34655277 |
ctcagggctcggccagttgtgtctacgttctctgactacattgatattctatatattattcaagcttaggattacttttacaaatttactttaaatgcta |
34655376 |
T |
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| Q |
313 |
cggtccaatttacatgattactcctaagccacttagtat |
351 |
Q |
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| T |
34655377 |
cggtccaatttacatgattactcctaagccacttagtat |
34655415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 201
Target Start/End: Complemental strand, 3101737 - 3101700
Alignment:
| Q |
164 |
ttcaaaagtaaatagatacgaaaaacgcaaacaaagaa |
201 |
Q |
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| T |
3101737 |
ttcaaaagtaaacagatacgataaacgcaaacaaagaa |
3101700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 208
Target Start/End: Complemental strand, 6263064 - 6263001
Alignment:
| Q |
145 |
gttagaacaagaaccttgattcaaaagtaaatagatacgaaaaacgcaaacaaagaaaacacaa |
208 |
Q |
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| T |
6263064 |
gttagaacaacaatcctggttcaaaagaaaatagatacgaaaaacgcaaacagagaacacacaa |
6263001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 146 - 213
Target Start/End: Original strand, 33717198 - 33717265
Alignment:
| Q |
146 |
ttagaacaagaaccttgattcaaaagtaaatagatacgaaaaacgcaaacaaagaaaacacaacattt |
213 |
Q |
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| T |
33717198 |
ttagaacaacaaccctagttcaaaagtaaacagatacgaaaaatgcaaacagagaacacacaagattt |
33717265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 5055928 - 5055884
Alignment:
| Q |
145 |
gttagaacaagaaccttgattcaaaagtaaatagatacgaaaaac |
189 |
Q |
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| T |
5055928 |
gttagaacaacaaccctggttcaaaagtaaaaagatacgaaaaac |
5055884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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