View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6971_low_1 (Length: 626)

Name: NF6971_low_1
Description: NF6971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6971_low_1
NF6971_low_1
[»] chr1 (11 HSPs)
chr1 (40-623)||(13867537-13868120)
chr1 (40-415)||(45795267-45795642)
chr1 (204-623)||(26510243-26510662)
chr1 (45-268)||(34352613-34352854)
chr1 (181-264)||(3544964-3545047)
chr1 (516-623)||(33150830-33150937)
chr1 (181-275)||(1248448-1248542)
chr1 (45-84)||(5808973-5809012)
chr1 (174-265)||(52691665-52691756)
chr1 (379-440)||(5808740-5808801)
chr1 (364-412)||(50730085-50730133)
[»] chr4 (4 HSPs)
chr4 (40-623)||(43516452-43517035)
chr4 (180-623)||(20543920-20544362)
chr4 (175-213)||(54483016-54483054)
chr4 (385-421)||(38295784-38295820)
[»] chr3 (8 HSPs)
chr3 (40-612)||(40513428-40514000)
chr3 (174-623)||(34829254-34829703)
chr3 (181-264)||(31675124-31675207)
chr3 (181-264)||(31921213-31921296)
chr3 (164-213)||(18368801-18368850)
chr3 (45-121)||(34829774-34829850)
chr3 (354-425)||(31921386-31921457)
chr3 (363-436)||(33121362-33121435)
[»] chr7 (5 HSPs)
chr7 (360-623)||(35213468-35213731)
chr7 (180-623)||(26855548-26855991)
chr7 (369-440)||(44433425-44433496)
chr7 (366-436)||(4077297-4077367)
chr7 (189-265)||(8753259-8753335)
[»] chr2 (8 HSPs)
chr2 (143-623)||(11196186-11196666)
chr2 (361-595)||(32624217-32624451)
chr2 (540-595)||(144246-144301)
chr2 (52-147)||(11196680-11196775)
chr2 (164-213)||(35488082-35488131)
chr2 (164-213)||(8066072-8066121)
chr2 (223-259)||(7300874-7300910)
chr2 (185-265)||(18844500-18844580)
[»] chr8 (7 HSPs)
chr8 (174-440)||(9510800-9511066)
chr8 (174-440)||(6245145-6245411)
chr8 (354-425)||(3939248-3939319)
chr8 (187-265)||(25193282-25193360)
chr8 (360-437)||(15439189-15439266)
chr8 (360-437)||(15530493-15530570)
chr8 (567-623)||(25900869-25900925)
[»] chr6 (8 HSPs)
chr6 (354-595)||(14687044-14687285)
chr6 (181-264)||(14844000-14844083)
chr6 (180-274)||(14686870-14686964)
chr6 (40-148)||(14686712-14686820)
chr6 (366-438)||(26513744-26513816)
chr6 (164-215)||(23065893-23065944)
chr6 (174-265)||(25350416-25350507)
chr6 (164-215)||(9565610-9565661)
[»] chr5 (4 HSPs)
chr5 (360-623)||(21367960-21368223)
chr5 (181-264)||(476407-476490)
chr5 (581-623)||(979350-979392)
chr5 (363-436)||(4415745-4415818)
[»] scaffold0555 (1 HSPs)
scaffold0555 (181-264)||(7862-7945)
[»] scaffold0043 (1 HSPs)
scaffold0043 (181-264)||(34472-34555)


Alignment Details
Target: chr1 (Bit Score: 488; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 40 - 623
Target Start/End: Original strand, 13867537 - 13868120
Alignment:
Q  40 cttagttttggtatgacaggtggctgagtgatgttcctttttgtatcaggttccgtcgtctatttaatttagtgtctaataagttgagcacggtagctga 139  Q
    |||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13867537 cttacttttggtatgacaggtggcttggtgatgttcctttttgtatcaggttccgtcgtctttttaatttagtgtctaataagttgagcacggtagctga 13867636  T
Q  140 tatggttgatggagaggcgtcgaattggcggcgtaggttaagggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttg 239  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  13867637 tatggttgttggagaggcgtggaattggcggcgtaggttaagggtgtgggaggaggatatgctagaggagtgtaggcttttaattaatggtgtcgttttg 13867736  T
Q  240 cagtctgatatttctgacaggtggcaatgagactccgattctgattgcggttacacggtgagaggtgtctatcaacaactgacagctcaggttcaacctc 339  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| || || |||||||||||| |||||||||||||||||||    
T  13867737 cagtctgatatttctgacaggtggcaatgggactccgattctgattacggttacacggtgatagatgcctatcaacaacttacagctcaggttcaacctc 13867836  T
Q  340 tagatgcttccattggagaccttatctggcataatcaggtgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaa 439  Q
     ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13867837 cagatgcttccattggcgaccttatctggcataatcaggtgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaa 13867936  T
Q  440 tcaccttctccggcgtggcatcatcattggcgaggcagcattgtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgct 539  Q
    |||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  13867937 tcaccttctccggcgtggtatcattgttggcgaggcagcattgtgtgttactgggtgtggcatggcagagtctgtttctcatttatttctacattgtgct 13868036  T
Q  540 acttttggtactttgtggcattttgtcaggtgttggattggaatgtcaggtgctgatccccttaatattgatgtccatctcatt 623  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  13868037 acttttggtactttatggcattttgtcaggtgttggattggaatgtcaggtgctgatccccttaatattgatgaccatttcatt 13868120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 40 - 415
Target Start/End: Complemental strand, 45795642 - 45795267
Alignment:
Q  40 cttagttttggtatgacaggtggctgagtgatgttcctttttgtatcaggttccgtcgtctatttaatttagtgtctaataagttgagcacggtagctga 139  Q
    |||| ||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45795642 cttacttttggtatgacaggtggctaggtgatgttcctttttgtatcagtttccgtcgtctatttaatttagtgtctaataagttgagcacggtagctga 45795543  T
Q  140 tatggttgatggagaggcgtcgaattggcggcgtaggttaagggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttg 239  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  45795542 tatggttgatggagaggcgtggaattggcggcgtaggttaagggtgtgggaggaggatatgctagaggagtgtaggcttttaattaatggtgtcgttttg 45795443  T
Q  240 cagtctgatatttctgacaggtggcaatgagactccgattctgattgcggttacacggtgagaggtgtctatcaacaactgacagctcaggttcaacctc 339  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45795442 cagtctgatatttctgacaggtggcaatgggactccgattctgattgtggttacacggtgagaggtgtctatcaacaactgacagctcaggttcaacctc 45795343  T
Q  340 tagatgcttccattggagaccttatctggcataatcaggtgccgcttaaggtttccatttttgcttggagattgtt 415  Q
     |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  45795342 cagatgcttccattggagaccttatttggcataatcaggtgccgcttaaggtttccatttttgcttggggattgtt 45795267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 204 - 623
Target Start/End: Original strand, 26510243 - 26510662
Alignment:
Q  204 gaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctgacaggtggcaatgagactccgattctgattgcggttacacggtgagag 303  Q
    |||||||||| ||  ||| || ||||||| |||||||||| |||| ||||||||||||||||||| ||||| |||| || | | |||||||| |||||||    
T  26510243 gaggagtgtaggcaattacttgatggtgttgttttgcagtatgatctttctgacaggtggcaatgggactctgattttgctggtggttacactgtgagag 26510342  T
Q  304 gtgtctatcaacaactgacagctcaggttcaacctctagatgcttccattggagaccttatctggcataatcaggtgccgcttaaggtttccatttttgc 403  Q
    || ||||| ||||||||||| |||||  | | |||| ||||| | | || ||||| |||||||||||||| || |||||||| ||||| ||||| |||||    
T  26510343 gtttctataaacaactgacaactcagactgatcctccagatggtactatgggagatcttatctggcataagcaagtgccgctgaaggtctccatctttgc 26510442  T
Q  404 ttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcatcatcattggcgaggcagcattgtgtgttactgggtgtggcatg 503  Q
    |||  | ||||| ||||| |||||||||||||||||| | ||| |  | |||||  | |||| |  ||| ||||   |||||||||| || || |||| |    
T  26510443 ttgacggttgttgcgggacaggttgccgactaagaataatcttatgagacgtggagtaatcaataccgaagcagttatgtgtgttacaggatgcggcaag 26510542  T
Q  504 gctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattggaatgtcaggtgctgatcccctta 603  Q
    |  |||||||   |||| || ||||| |||||||| | ||| ||||| |||||||||  | |||||| |||||| ||||||||||||| ||| ||| |||    
T  26510543 gaagagtctgcgcctcacttgtttattcattgtgccattttcggtacattgtggcatcatatcaggtcttggatcggaatgtcaggtgttgaccccttta 26510642  T
Q  604 atattgatgtccatctcatt 623  Q
    |||| |||| |||| |||||    
T  26510643 atatcgatgaccatttcatt 26510662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 45 - 268
Target Start/End: Complemental strand, 34352854 - 34352613
Alignment:
Q  45 ttttggtatgacaggtggctgagtgatgttcctttttgtatcaggttccgtcgtctatttaatttagtgtctaataagttgagcacggtagctgatatgg 144  Q
    ||||| ||||||||||||||  ||||||||||||||||||||||||| ||||| |||||| | |||| |||||||||| ||||||| |||||| ||||||    
T  34352854 ttttgatatgacaggtggcttggtgatgttcctttttgtatcaggttgcgtcgcctatttgacttagcgtctaataagctgagcacagtagctaatatgg 34352755  T
Q  145 ttg------------------atggagaggcgtcgaattggcggcgtaggttaagggtgtgggaggaggatttgctagaggagtgtaagcttttaattaa 226  Q
    |||                  | |||||||||| |   ||| |||||||||| |||||||||||||||||  ||||||||||||||| ||  |||| |||    
T  34352754 ttgcccttggtggggaggttgacggagaggcgtggggctggaggcgtaggttgagggtgtgggaggaggagatgctagaggagtgtaggcaattaactaa 34352655  T
Q  227 tggtgtcgttttgcagtctgatatttctgacaggtggcaatg 268  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  34352654 tggtgtcgttttgcagtctgatatttatgacaggtggcaatg 34352613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 3544964 - 3545047
Alignment:
Q  181 gggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctgacaggtggc 264  Q
    |||||||||||||||| ||| |||| ||||||| ||  ||| |||||||||| |||||||||||||||||||||||||||||||    
T  3544964 gggtgtgggaggaggagttggtagaagagtgtaggcaattacttaatggtgttgttttgcagtctgatatttctgacaggtggc 3545047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 516 - 623
Target Start/End: Complemental strand, 33150937 - 33150830
Alignment:
Q  516 tctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattggaatgtcaggtgctgatccccttaatattgatgtcc 615  Q
    |||||||||||||| || || || ||||||||  | ||||||||| || |||||| |||||| |||||||||||||| || |||||||||||||||| ||    
T  33150937 tctcatttatttattcactgcgccacttttggctcattgtggcatcttatcaggtcttggatcggaatgtcaggtgccgacccccttaatattgatgacc 33150838  T
Q  616 atctcatt 623  Q
    || |||||    
T  33150837 atttcatt 33150830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 181 - 275
Target Start/End: Original strand, 1248448 - 1248542
Alignment:
Q  181 gggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctgacaggtggcaatgagactcc 275  Q
    |||| |||||||||||  || |||||||||||| ||  ||| |||||||||| |||||||| | ||||||||||||||||||||| || ||||||    
T  1248448 gggtatgggaggaggagctgttagaggagtgtaggcaattacttaatggtgttgttttgcaatttgatatttctgacaggtggcactgggactcc 1248542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 84
Target Start/End: Complemental strand, 5809012 - 5808973
Alignment:
Q  45 ttttggtatgacaggtggctgagtgatgttcctttttgta 84  Q
    ||||||||||||||||||||  ||||||||||||||||||    
T  5809012 ttttggtatgacaggtggcttggtgatgttcctttttgta 5808973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 265
Target Start/End: Complemental strand, 52691756 - 52691665
Alignment:
Q  174 aggttaagggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctgacaggtggca 265  Q
    |||||| ||| |||||||||||| ||| | |||||||||| || | |  |||||| | | ||||||||| |||| |||||||||||||||||    
T  52691756 aggttatgggcgtgggaggaggagttggtggaggagtgtaggcatcttcttaatgattttgttttgcagactgacatttctgacaggtggca 52691665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 440
Target Start/End: Complemental strand, 5808801 - 5808740
Alignment:
Q  379 tgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaat 440  Q
    ||||||| |||||||| || ||||||||| | ||||| || || ||||||||||||||||||    
T  5808801 tgccgctaaaggtttctatctttgcttggcggttgttgcgagacaggttgccgactaagaat 5808740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 364 - 412
Target Start/End: Complemental strand, 50730133 - 50730085
Alignment:
Q  364 tctggcataatcaggtgccgcttaaggtttccatttttgcttggagatt 412  Q
    ||||||| || ||||| ||||| ||||| ||||||||||||||||||||    
T  50730133 tctggcacaaacaggtaccgctgaaggtgtccatttttgcttggagatt 50730085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 460; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 40 - 623
Target Start/End: Original strand, 43516452 - 43517035
Alignment:
Q  40 cttagttttggtatgacaggtggctgagtgatgttcctttttgtatcaggttccgtcgtctatttaatttagtgtctaataagttgagcacggtagctga 139  Q
    |||| ||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43516452 cttacttttggtatgacaagtggcttggtgatgttcctttttgtatcaggttccgtcgtctatttaatttagtgtctaataagttgagcacggtagctga 43516551  T
Q  140 tatggttgatggagaggcgtcgaattggcggcgtaggttaagggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttg 239  Q
    |||||||||||||||||||| || ||||||||||||||| |||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||    
T  43516552 tatggttgatggagaggcgtggagttggcggcgtaggttgagggtgtgggaggaggatatgctagaggagtgtaggcatttaattaatggtgtcgttttg 43516651  T
Q  240 cagtctgatatttctgacaggtggcaatgagactccgattctgattgcggttacacggtgagaggtgtctatcaacaactgacagctcaggttcaacctc 339  Q
    ||||||||||||||||| ||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  43516652 cagtctgatatttctgagaggtggcaatgggactttgattctgattgcggttacacggtgagaggtgtctatcaacaaccgacagctcaggttcaacctc 43516751  T
Q  340 tagatgcttccattggagaccttatctggcataatcaggtgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaa 439  Q
     ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  43516752 cagatgctaccattggagatcttatctggcataatcaggtgccgcttaaggtttccatttttgcttggagattgttatgggataggttgccgactaagaa 43516851  T
Q  440 tcaccttctccggcgtggcatcatcattggcgaggcagcattgtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgct 539  Q
    ||| || |||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||| |  ||||||||||||||||||||||||||||||||    
T  43516852 tcatctcctccggcgtggcatcatcgttggcgaggtagcattgtgtgttactgggtgcggcatgacatagtctgtttctcatttatttatacattgtgct 43516951  T
Q  540 acttttggtactttgtggcattttgtcaggtgttggattggaatgtcaggtgctgatccccttaatattgatgtccatctcatt 623  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  43516952 actttcggtactttgtggcattttatcaggtgttggattggaatgtcaggtgctgatccccttaatattgatgaccatttcatt 43517035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 180 - 623
Target Start/End: Complemental strand, 20544362 - 20543920
Alignment:
Q  180 agggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctgacaggtggcaatgagactccgatt 279  Q
    |||| ||||||||||||  || |||||||||||| | |||||||||||||||||| |||||||  | ||||| |||||||||| ||||| ||||| ||||    
T  20544362 agggcgtgggaggaggagatgttagaggagtgtaggtttttaattaatggtgtcg-tttgcagcataatattactgacaggtgacaatgggactctgatt 20544264  T
Q  280 ctgattgcggttacacggtgagaggtgtctatcaacaactgacagctcaggttcaacctctagatgcttccatt-ggagaccttatctggcataatcagg 378  Q
    ||| | | ||||| |  ||| |||| |||||||| || || ||| ||||||   |||||| ||| | |||| || ||||| ||||| |||||||| ||||    
T  20544263 ctgttggtggttatagtgtgggaggcgtctatcatcatcttacaactcaggcggaacctccagacg-ttcctttgggagatcttatatggcataagcagg 20544165  T
Q  379 tgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcatcatcattggcgaggcagc 478  Q
    ||||||| ||||||||||||||| ||||| |||| || || |||||||||||||||||||| || |||||  |||||||||| ||||  |||||| ||      
T  20544164 tgccgctgaaggtttccatttttacttggcgattattgcgagataggttgccgactaagaaccatcttctaaggcgtggcataatcaacggcgagacaag 20544065  T
Q  479 attgtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggatt 578  Q
      ||||||| || ||||| || ||||  ||| ||   |||||||||||||| || || || ||||||||| | ||||||||| || |||||| ||||||     
T  20544064 tatgtgtgtcacagggtgcggtatggaagagactacatctcatttatttattcactgcgccacttttggttcattgtggcatcttatcaggtcttggatc 20543965  T
Q  579 ggaatgtcaggtgctgatccccttaatattgatgtccatctcatt 623  Q
    ||||||||||||||||| ||| |||||||||||| |||| |||||    
T  20543964 ggaatgtcaggtgctgacccctttaatattgatgaccatttcatt 20543920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 175 - 213
Target Start/End: Original strand, 54483016 - 54483054
Alignment:
Q  175 ggttaagggtgtgggaggaggatttgctagaggagtgta 213  Q
    ||||| |||||||||||||||||||| ||||||||||||    
T  54483016 ggttatgggtgtgggaggaggatttggtagaggagtgta 54483054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 385 - 421
Target Start/End: Complemental strand, 38295820 - 38295784
Alignment:
Q  385 ttaaggtttccatttttgcttggagattgttacggga 421  Q
    |||| |||||||||||||||||||| |||||||||||    
T  38295820 ttaaagtttccatttttgcttggaggttgttacggga 38295784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 417; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 40 - 612
Target Start/End: Original strand, 40513428 - 40514000
Alignment:
Q  40 cttagttttggtatgacaggtggctgagtgatgttcctttttgtatcaggttccgtcgtctatttaatttagtgtctaataagttgagcacggtagctga 139  Q
    |||| |||||||||||||| |||||| ||||||||||||| ||||||||||||||||| || ||||||||||||||| |||||||||||||| |||||||    
T  40513428 cttacttttggtatgacagatggctgggtgatgttcctttctgtatcaggttccgtcgactttttaatttagtgtctgataagttgagcacgatagctga 40513527  T
Q  140 tatggttgatggagaggcgtcgaattggcggcgtaggttaagggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttg 239  Q
    |||||||| |||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||    
T  40513528 tatggttgctggagaggggtggaattggcggcgtaggttaagggtgtgggaggaggatatgctagaggagtgtaggctgttaattaatggtgtcgttttg 40513627  T
Q  240 cagtctgatatttctgacaggtggcaatgagactccgattctgattgcggttacacggtgagaggtgtctatcaacaactgacagctcaggttcaacctc 339  Q
    |||| |||||||||||||||||||||||| ||||||||| | |||| ||||||||||||||| | || |||||||||||| |||| ||||||||||||||    
T  40513628 cagtatgatatttctgacaggtggcaatgggactccgatacggattacggttacacggtgagcgatgcctatcaacaacttacagttcaggttcaacctc 40513727  T
Q  340 tagatgcttccattggagaccttatctggcataatcaggtgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaa 439  Q
     ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40513728 cagatgcttccattggcgaccttatctggcataatcaggtgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaa 40513827  T
Q  440 tcaccttctccggcgtggcatcatcattggcgaggcagcattgtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgct 539  Q
    ||||||||| |||||||| |||||| | || |||||||||||||||||| | |||||||||||||| |||||||| |||||||||||| |||||||| ||    
T  40513828 tcaccttcttcggcgtggtatcatcgtcggtgaggcagcattgtgtgtttccgggtgtggcatggcagagtctgtctctcatttatttctacattgtcct 40513927  T
Q  540 acttttggtactttgtggcattttgtcaggtgttggattggaatgtcaggtgctgatccccttaatattgatg 612  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  40513928 acttttggtactttatggcattttgtcaggtgttggattggaatgtcatgtgctgatccccttaatattgatg 40514000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 174 - 623
Target Start/End: Complemental strand, 34829703 - 34829254
Alignment:
Q  174 aggttaagggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctgacaggtggcaatgagact 273  Q
    ||||| ||| |||||||||||||  ||||||||||||||| |   ||| |||||||||| ||||||||||||||| ||||||||||||||||||| ||||    
T  34829703 aggttgaggctgtgggaggaggagatgctagaggagtgtaggaaattacttaatggtgttgttttgcagtctgatctttctgacaggtggcaatgggact 34829604  T
Q  274 ccgattctgattgcggttacacggtgagaggtgtctatcaacaactgacagctcaggttcaacctctagatgcttccattggagaccttatctggcataa 373  Q
    | |||| |||| | |||||||| ||||||||||||||||||||||||| | |||||| | | |||| | ||| | | || ||||| ||||||||||||||    
T  34829603 ctgattttgatggtggttacactgtgagaggtgtctatcaacaactgaaaactcaggctgatcctccatatggtactatgggagatcttatctggcataa 34829504  T
Q  374 tcaggtgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcatcatcattggcgag 473  Q
     ||||||| ||| ||||| ||||| ||||||||| | ||||| ||||| |||||| ||| ||||||| | |||||  | |||||  | |||| || |||     
T  34829503 gcaggtgctgctgaaggtctccatctttgcttggcggttgttgcgggacaggttgtcgattaagaataatcttctaagacgtggagtaatcaatgccgaa 34829404  T
Q  474 gcagcattgtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgtt 573  Q
    | ||   |||||||||| ||||| |||| ||  |||||||   |||| || ||||| |||||||| |||||  |||| |||||||||  | |||||| ||    
T  34829403 gtagttatgtgtgttacagggtgcggcaaggaagagtctgcgcctcacttgtttattcattgtgccactttcagtacattgtggcatcatatcaggtctt 34829304  T
Q  574 ggattggaatgtcaggtgctgatccccttaatattgatgtccatctcatt 623  Q
    |||| ||||||||||||| | | ||| |||||||||||| |||| |||||    
T  34829303 ggatcggaatgtcaggtgttaacccctttaatattgatgaccatttcatt 34829254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 31675207 - 31675124
Alignment:
Q  181 gggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctgacaggtggc 264  Q
    |||||||||||||||| ||| |||||||||||| |   ||| |||||||||| |||||||||||||||||||||||||||||||    
T  31675207 gggtgtgggaggaggagttggtagaggagtgtaggaaattacttaatggtgtggttttgcagtctgatatttctgacaggtggc 31675124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 31921213 - 31921296
Alignment:
Q  181 gggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctgacaggtggc 264  Q
    |||||||||||||||| ||| |||||||||||| |   ||| |||||||||| |||||||||||||||||||||||||||||||    
T  31921213 gggtgtgggaggaggagttggtagaggagtgtaggaaattacttaatggtgtggttttgcagtctgatatttctgacaggtggc 31921296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 164 - 213
Target Start/End: Original strand, 18368801 - 18368850
Alignment:
Q  164 ttggcggcgtaggttaagggtgtgggaggaggatttgctagaggagtgta 213  Q
    |||||||||||||||  ||||||||||||||| |||||||||||||||||    
T  18368801 ttggcggcgtaggttgtgggtgtgggaggaggctttgctagaggagtgta 18368850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 121
Target Start/End: Complemental strand, 34829850 - 34829774
Alignment:
Q  45 ttttggtatgacaggtggctgagtgatgttcctttttgtatcaggttccgtcgtctatttaatttagtgtctaataa 121  Q
    ||||||||||||||||||||  ||||||| ||||||||||  ||||| |||||  ||||| || |||||||||||||    
T  34829850 ttttggtatgacaggtggcttggtgatgtccctttttgtactaggtttcgtcggttatttgatctagtgtctaataa 34829774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 425
Target Start/End: Original strand, 31921386 - 31921457
Alignment:
Q  354 ggagaccttatctggcataatcaggtgccgcttaaggtttccatttttgcttggagattgttacgggatagg 425  Q
    ||||||||| |||||||||| ||||| ||  | |||||||||||| | |||||||| ||| |||||||||||    
T  31921386 ggagaccttgtctggcataagcaggttcctttgaaggtttccattatggcttggagtttgctacgggatagg 31921457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 436
Target Start/End: Original strand, 33121362 - 33121435
Alignment:
Q  363 atctggcataatcaggtgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaa 436  Q
    |||||||||| |||||||||| | ||||||||| | ||||||||||| ||| | || ||||| ||||| |||||    
T  33121362 atctggcatagtcaggtgccgttgaaggtttccttatttgcttggaggttgcttcgtgatagattgcctactaa 33121435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 360 - 623
Target Start/End: Complemental strand, 35213731 - 35213468
Alignment:
Q  360 cttatctggcataatcaggtgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggca 459  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  35213731 cttatctggcataatcaagtgccgcttaaggtttccatttttgcttgaagattgttacgggataggttgccgactaagaatcaccttctccggcatggca 35213632  T
Q  460 tcatcattggcgaggcagcattgtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggca 559  Q
    ||||  ||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||| | ||||||||||||    
T  35213631 tcattgttggcgaggcagcattgtgtgttactgggtgcggcatggcagagtctgtttcccatttatttatacattgtgctactttcgttactttgtggca 35213532  T
Q  560 ttttgtcaggtgttggattggaatgtcaggtgctgatccccttaatattgatgtccatctcatt 623  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||    
T  35213531 ttttgtcaggtgttggattggaatgtcaggtgttgatccccttaatattgatgaccatttcatt 35213468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 180 - 623
Target Start/End: Complemental strand, 26855991 - 26855548
Alignment:
Q  180 agggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctgacaggtggcaatgagactccgatt 279  Q
    |||| ||||||||||||  || |||||||||||| ||||||||||||||||||| ||||||||  | |||| || |||||||||||||| ||||| ||||    
T  26855991 agggcgtgggaggaggagctgttagaggagtgtaggcttttaattaatggtgtcattttgcagcataatatctccgacaggtggcaatgggactcggatt 26855892  T
Q  280 ctgattgcggttacacggtgagaggtgtctatcaacaactgacagctcaggttcaacctctagatgcttccattgg-agaccttatctggcataatcagg 378  Q
     || | ||||||| |  ||| |||| | |||||| || || ||| |||| | | |||||| ||| | |||| |||| ||||||||| |||||||| ||||    
T  26855891 atggtggcggttatagtgtgggaggcgcctatcatcatcttacaactcaagctgaacctccagacg-ttcctttgggagaccttatatggcataagcagg 26855793  T
Q  379 tgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcatcatcattggcgaggcagc 478  Q
    ||||||| ||||||||||||||||||||| |||| || || ||||||||||||||||||||||| ||| |  |||||||||| ||||   |||||||       
T  26855792 tgccgctcaaggtttccatttttgcttggcgattattgcgtgataggttgccgactaagaatcatctttttaggcgtggcataatcaacagcgaggcttg 26855693  T
Q  479 attgtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggatt 578  Q
      ||||||| || ||||| || ||||  ||| ||   |||||| | ||||| |||||  | ||||||||| ||||||||||| || |||||| || |||     
T  26855692 tatgtgtgtcacagggtgcggtatggaagagactacatctcatctttttattcattgcaccacttttggttctttgtggcatcttatcaggtctttgatc 26855593  T
Q  579 ggaatgtcaggtgctgatccccttaatattgatgtccatctcatt 623  Q
    ||||||||||||||||| ||  |||||||| ||| |||| |||||    
T  26855592 ggaatgtcaggtgctgacccttttaatattaatgaccatttcatt 26855548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 440
Target Start/End: Complemental strand, 44433496 - 44433425
Alignment:
Q  369 cataatcaggtgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaat 440  Q
    ||||||||||| ||||| ||||| || |||||||||||||||||||| || || ||||| || || ||||||    
T  44433496 cataatcaggtaccgctgaaggtgtctatttttgcttggagattgttgcgtgacaggttaccaaccaagaat 44433425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 366 - 436
Target Start/End: Complemental strand, 4077367 - 4077297
Alignment:
Q  366 tggcataatcaggtgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaa 436  Q
    |||||||| ||||||||| | |||||||| |||||||||||||| ||| | || ||||| ||||| |||||    
T  4077367 tggcataaccaggtgccgttgaaggtttctatttttgcttggaggttgcttcgtgatagattgcctactaa 4077297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 189 - 265
Target Start/End: Original strand, 8753259 - 8753335
Alignment:
Q  189 gaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctgacaggtggca 265  Q
    ||||||||  || ||| |||||||| ||| ||| || | ||| | |||||||| |||||||||||||||||||||||    
T  8753259 gaggaggacatggtagtggagtgtaggctcttacttgacggttttgttttgcattctgatatttctgacaggtggca 8753335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 169; Significance: 3e-90; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 143 - 623
Target Start/End: Complemental strand, 11196666 - 11196186
Alignment:
Q  143 ggttgatggagaggcgtcgaattggcggcgtaggttaagggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcag 242  Q
    |||||| |||||||||| |  |||| |||| | ||| |||||||||||||||||  ||||||||||||||| ||  ||||||||||||||||||||||||    
T  11196666 ggttgacggagaggcgtggggttggaggcgaatgttgagggtgtgggaggaggagatgctagaggagtgtaggcaattaattaatggtgtcgttttgcag 11196567  T
Q  243 tctgatatttctgacaggtggcaatgagactccgattctgattgcggttacacggtgagaggtgtctatcaacaactgacagctcaggttcaacctctag 342  Q
      | |||||||||||||||||||||| ||||| ||||||| | | |||||||  ||| |||| |||||||| || || ||  |||||| | |||||| ||    
T  11196566 cataatatttctgacaggtggcaatgggactctgattctgctggtggttacagtgtgggaggcgtctatcatcaccttactactcaggctgaacctccag 11196467  T
Q  343 atgcttccattggagaccttatctggcataatcaggtgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatca 442  Q
    ||| | | || ||||| |||||||||||||| ||||||||||| ||||||||||||||| ||||| ||||||| || |||||||||||||||||||| ||    
T  11196466 atgttactataggagatcttatctggcataagcaggtgccgctgaaggtttccatttttacttggcgattgttgcgagataggttgccgactaagaacca 11196367  T
Q  443 ccttctccggcgtggcatcatcattggcgaggcagcattgtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctact 542  Q
     |||||  |||||||||| |||| |||||||||||   |||||||||| ||||| || ||||| |||  ||  |||||||||||||| || || || |||    
T  11196366 tcttctaaggcgtggcataatcaatggcgaggcagttatgtgtgttacagggtgcggtatggcagagattgcgtctcatttatttattcactgcgccact 11196267  T
Q  543 tttggtactttgtggcattttgtcaggtgttggattggaatgtcaggtgctgatccccttaatattgatgtccatctcatt 623  Q
    |||||| | ||||||||| || |||||| ||||||  ||||||||||||  || | |||||||||||||| |||| |||||    
T  11196266 tttggttcattgtggcatcttatcaggtcttggatcagaatgtcaggtgtcgacctccttaatattgatgaccatttcatt 11196186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 361 - 595
Target Start/End: Complemental strand, 32624451 - 32624217
Alignment:
Q  361 ttatctggcataatcaggtgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcat 460  Q
    |||| |||||||| ||||||||||| |||||||||||||||| |||| |||| ||  | |||||||||||||||||||| || |||||  ||||||||||    
T  32624451 ttatatggcataagcaggtgccgctgaaggtttccatttttgtttggcgattattgagagataggttgccgactaagaaccatcttctaaggcgtggcat 32624352  T
Q  461 catcattggcgaggcagcattgtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcat 560  Q
     ||||  |||||||||    ||||||| || || || || ||||  ||| ||   |||||||||||||| ||||| || ||||||||| | |||||||||    
T  32624351 aatcaacggcgaggcatgtatgtgtgtcacaggatgcggtatggaagagactacatctcatttatttattcattgcgccacttttggttcattgtggcat 32624252  T
Q  561 tttgtcaggtgttggattggaatgtcaggtgctga 595  Q
     || |||||| ||||||||||||||||||||||||    
T  32624251 cttatcaggtcttggattggaatgtcaggtgctga 32624217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 540 - 595
Target Start/End: Original strand, 144246 - 144301
Alignment:
Q  540 acttttggtactttgtggcattttgtcaggtgttggattggaatgtcaggtgctga 595  Q
    ||||||||| ||||||||||| || |||||| |||||| |||||||||||||||||    
T  144246 acttttggttctttgtggcatcttatcaggtcttggatcggaatgtcaggtgctga 144301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 52 - 147
Target Start/End: Complemental strand, 11196775 - 11196680
Alignment:
Q  52 atgacaggtggctgagtgatgttcctttttgtatcaggttccgtcgtctatttaatttagtgtctaataagttgagcacggtagctgatatggttg 147  Q
    |||| ||||||||  |||||  ||||||||||| |||||||||| || ||||| | |||| |||||||||  |||| ||||| |||||||||||||    
T  11196775 atgataggtggcttggtgatactcctttttgtaccaggttccgttgtttatttgacttagcgtctaataaactgagtacggtggctgatatggttg 11196680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 35488131 - 35488082
Alignment:
Q  164 ttggcggcgtaggttaagggtgtgggaggaggatttgctagaggagtgta 213  Q
    |||||||||||||||  ||| ||||||||||| |||||||||||||||||    
T  35488131 ttggcggcgtaggttgtgggcgtgggaggaggctttgctagaggagtgta 35488082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 213
Target Start/End: Original strand, 8066072 - 8066121
Alignment:
Q  164 ttggcggcgtaggttaagggtgtgggaggaggatttgctagaggagtgta 213  Q
    |||||||||||||||  ||| ||||||||||| | |||||||||||||||    
T  8066072 ttggcggcgtaggttgtgggcgtgggaggaggctatgctagaggagtgta 8066121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 223 - 259
Target Start/End: Complemental strand, 7300910 - 7300874
Alignment:
Q  223 ttaatggtgtcgttttgcagtctgatatttctgacag 259  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  7300910 ttaatggtgttgttttgcagtctgatgtttctgacag 7300874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 185 - 265
Target Start/End: Original strand, 18844500 - 18844580
Alignment:
Q  185 gtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctgacaggtggca 265  Q
    |||||||||||| ||| | |||||||||| || | |  |||||| | | |||||| ||||||| |||||||||||||||||    
T  18844500 gtgggaggaggagttggtggaggagtgtaggcatcttcttaatgattttgttttgtagtctgacatttctgacaggtggca 18844580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 174 - 440
Target Start/End: Complemental strand, 9511066 - 9510800
Alignment:
Q  174 aggttaagggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctgacaggtggcaatgagact 273  Q
    ||||| |||||||||||||||||  || |||||||||||| ||  ||  |||||||||| ||||||||| || |||||| |||||| ||||  || ||||    
T  9511066 aggttgagggtgtgggaggaggagatgttagaggagtgtaggcaattgcttaatggtgttgttttgcagcctaatatttttgacagatggctttgggact 9510967  T
Q  274 ccgattctgattgcggttacacggtgagaggtgtctatcaacaactgacagctcaggttcaacctctagatgcttccattggagaccttatctggcataa 373  Q
    | | ||||||| | |||||||| ||||||||||||||| ||||||||||| | || | | | |||| ||||| | | |  ||||| ||||||||||||||    
T  9510966 ctgtttctgatggtggttacactgtgagaggtgtctatgaacaactgacaacgcaagctgatcctcaagatgttactacgggagatcttatctggcataa 9510867  T
Q  374 tcaggtgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaat 440  Q
     ||||||||| | |||||||| || ||||||||  | ||||| || || |||||| |||||||||||    
T  9510866 gcaggtgccgttaaaggtttctatctttgcttgacggttgttgcgagacaggttgtcgactaagaat 9510800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 174 - 440
Target Start/End: Complemental strand, 6245411 - 6245145
Alignment:
Q  174 aggttaagggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctgacaggtggcaatgagact 273  Q
    ||||| |||||||||||||||||  || |||| ||||||| |   ||| |||||||||| ||||||| | ||||||||||||||| |||||  || || |    
T  6245411 aggttgagggtgtgggaggaggagatgttagatgagtgtaggtaattacttaatggtgttgttttgccgcctgatatttctgacaagtggctttgggatt 6245312  T
Q  274 ccgattctgattgcggttacacggtgagaggtgtctatcaacaactgacagctcaggttcaacctctagatgcttccattggagaccttatctggcataa 373  Q
    | | ||||||| | |||||||| ||||||||||||||| |||||||||||   |||| |   |||| ||||| | | |  ||||| ||||| ||||||||    
T  6245311 ctgtttctgatggtggttacactgtgagaggtgtctatgaacaactgacaatgcaggctgttcctcaagatgttactacgggagatcttatttggcataa 6245212  T
Q  374 tcaggtgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaat 440  Q
     |||||||| || |||||||| || ||||||||| ||||| | || |||||||||| ||||||||||    
T  6245211 gcaggtgccactaaaggtttctatctttgcttggcgattgatgcgagataggttgctgactaagaat 6245145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 425
Target Start/End: Complemental strand, 3939319 - 3939248
Alignment:
Q  354 ggagaccttatctggcataatcaggtgccgcttaaggtttccatttttgcttggagattgttacgggatagg 425  Q
    ||||||||| |||||||||| ||||| ||  | |||||||||||| ||||||||   |||||||||||||||    
T  3939319 ggagaccttgtctggcataagcaggttcctttgaaggtttccattcttgcttggcatttgttacgggatagg 3939248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 187 - 265
Target Start/End: Complemental strand, 25193360 - 25193282
Alignment:
Q  187 gggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctgacaggtggca 265  Q
    |||||||||| ||| | |||||||||| || | |  |||||| | | |||||||||||||| |||||||||||||||||    
T  25193360 gggaggaggagttggtggaggagtgtaggcatcttcttaatgattttgttttgcagtctgacatttctgacaggtggca 25193282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 437
Target Start/End: Complemental strand, 15439266 - 15439189
Alignment:
Q  360 cttatctggcataatcaggtgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaag 437  Q
    ||||| |||||||| ||||| ||  | ||||| ||||||||||||||| ||||||| ||||| ||| |||| ||||||    
T  15439266 cttatgtggcataaacaggtacccatgaaggtctccatttttgcttggcgattgttgcgggacaggctgccaactaag 15439189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 437
Target Start/End: Complemental strand, 15530570 - 15530493
Alignment:
Q  360 cttatctggcataatcaggtgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaag 437  Q
    ||||| |||||||| ||||| ||  | ||||| ||||||||||||||| ||||||| ||||| ||| |||| ||||||    
T  15530570 cttatgtggcataaacaggtacccatgaaggtctccatttttgcttggcgattgttgcgggacaggctgccaactaag 15530493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 567 - 623
Target Start/End: Complemental strand, 25900925 - 25900869
Alignment:
Q  567 aggtgttggattggaatgtcaggtgctgatccccttaatattgatgtccatctcatt 623  Q
    |||| |||||| ||||||||||||| ||| ||| |||||||||||| |||| |||||    
T  25900925 aggtcttggatcggaatgtcaggtgttgacccctttaatattgatgaccatttcatt 25900869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 3e-31; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 354 - 595
Target Start/End: Original strand, 14687044 - 14687285
Alignment:
Q  354 ggagaccttatctggcataatcaggtgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggc 453  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||| || || ||||||||||||||||||||||| ||| |  |||    
T  14687044 ggagaccttatatggcataagcaggtgccgcttaaggtttccatttttgcttggcgattattgcgtgataggttgccgactaagaatcatctttttaggc 14687143  T
Q  454 gtggcatcatcattggcgaggcagcattgtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtacttt 553  Q
    ||||||| ||||   | ||||      ||||||| || ||||| ||  |||  ||| ||   |||||| | ||||| |||||  | ||||||||| ||||    
T  14687144 gtggcataatcaacagtgaggtttgtatgtgtgtcacagggtgcggtgtggaagagactacatctcatctttttattcattgcaccacttttggttcttt 14687243  T
Q  554 gtggcattttgtcaggtgttggattggaatgtcaggtgctga 595  Q
    ||||||| || |||||| |||||| |||||||||||||||||    
T  14687244 gtggcatcttatcaggtcttggatcggaatgtcaggtgctga 14687285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 14844000 - 14844083
Alignment:
Q  181 gggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctgacaggtggc 264  Q
    |||||||||||||||| ||| |||| ||||||| ||  ||| |||||||||| |||||||||||||||||||||||||||||||    
T  14844000 gggtgtgggaggaggagttggtagaagagtgtaggcaattacttaatggtgttgttttgcagtctgatatttctgacaggtggc 14844083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 180 - 274
Target Start/End: Original strand, 14686870 - 14686964
Alignment:
Q  180 agggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctgacaggtggcaatgagactc 274  Q
    |||| ||||||||| ||  || |||||||||||| | ||||||||||||||||| ||||||||  | |||| ||||||||||||||||| |||||    
T  14686870 agggcgtgggaggatgagctgttagaggagtgtagggttttaattaatggtgtcattttgcagcataatatctctgacaggtggcaatgggactc 14686964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 40 - 148
Target Start/End: Original strand, 14686712 - 14686820
Alignment:
Q  40 cttagttttggtatgacaggtggctgagtgatgttcctttttgtatcaggttccgtcgtctatttaatttagtgtctaataagttgagcacggtagctga 139  Q
    |||| ||||||||||||||||||||  |||||   ||||||||||  || ||||||||| | ||| ||||||  |||||||| |||||||| || |||||    
T  14686712 cttacttttggtatgacaggtggcttggtgatacacctttttgtactagattccgtcgtttgtttgatttagcatctaataaattgagcactgtggctga 14686811  T
Q  140 tatggttga 148  Q
    |||||||||    
T  14686812 tatggttga 14686820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 366 - 438
Target Start/End: Complemental strand, 26513816 - 26513744
Alignment:
Q  366 tggcataatcaggtgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaaga 438  Q
    |||||||| ||||| || || |||||||||||||||||||||   ||||| ||||||||||||||||| ||||    
T  26513816 tggcataagcaggttcctctaaaggtttccatttttgcttggcagttgttgcgggataggttgccgaccaaga 26513744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 23065893 - 23065944
Alignment:
Q  164 ttggcggcgtaggttaagggtgtgggaggaggatttgctagaggagtgtaag 215  Q
    |||||||||| ||||  ||| |||||||||||||||||||||||||||||||    
T  23065893 ttggcggcgtcggttgtgggcgtgggaggaggatttgctagaggagtgtaag 23065944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 174 - 265
Target Start/End: Complemental strand, 25350507 - 25350416
Alignment:
Q  174 aggttaagggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctgacaggtggca 265  Q
    |||||| ||| |||||||||||| ||| | |||||||||| |||| |  |||||| | | ||||||||| |||| |||||||||||||||||    
T  25350507 aggttatgggcgtgggaggaggagttggtggaggagtgtaggcttcttcttaatgattttgttttgcagactgacatttctgacaggtggca 25350416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 9565661 - 9565610
Alignment:
Q  164 ttggcggcgtaggttaagggtgtgggaggaggatttgctagaggagtgtaag 215  Q
    |||| ||||||||||  ||| ||||||||||| |||||||||||||||||||    
T  9565661 ttggaggcgtaggttgtgggcgtgggaggaggctttgctagaggagtgtaag 9565610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 3e-28; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 360 - 623
Target Start/End: Original strand, 21367960 - 21368223
Alignment:
Q  360 cttatctggcataatcaggtgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggca 459  Q
    ||||| ||||||||  |||||||||| ||||||||||||||| ||||| |||| ||  | |||||||||||||||||||| || || ||  |||||||||    
T  21367960 cttatatggcataagtaggtgccgctgaaggtttccattttttcttggcgattattgagagataggttgccgactaagaaccatctcctaaggcgtggca 21368059  T
Q  460 tcatcattggcgaggca-gcattgtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggc 558  Q
    | ||||  ||||||||| | | | ||||| || ||||| || ||||  ||| ||   ||| || | ||||| ||||| || ||||||||| | |||||||    
T  21368060 taatcaacggcgaggcatgtaat-tgtgtcacagggtgcggtatggaagagactacatcttatctttttattcattgcgccacttttggttcattgtggc 21368158  T
Q  559 attttgtcaggtgttggattggaatgtcaggtgctgatccccttaatattgatgtccatctcatt 623  Q
    || || |||||| |||||| ||||||||||||||||| || ||||||||||||| |||| |||||    
T  21368159 atcttatcaggtcttggatcggaatgtcaggtgctgaccctcttaatattgatgaccatttcatt 21368223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 476490 - 476407
Alignment:
Q  181 gggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctgacaggtggc 264  Q
    |||||||||||||||| ||| |||||||||||| ||  ||| |||||||||| |||||||||||||||||||||||||||||||    
T  476490 gggtgtgggaggaggagttggtagaggagtgtaggcaattacttaatggtgttgttttgcagtctgatatttctgacaggtggc 476407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 581 - 623
Target Start/End: Original strand, 979350 - 979392
Alignment:
Q  581 aatgtcaggtgctgatccccttaatattgatgtccatctcatt 623  Q
    ||||||||||| |||||||||||||||||||| |||| |||||    
T  979350 aatgtcaggtggtgatccccttaatattgatgaccatttcatt 979392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 436
Target Start/End: Original strand, 4415745 - 4415818
Alignment:
Q  363 atctggcataatcaggtgccgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaa 436  Q
    ||||||||||||||||||||| | ||||||||  | ||||||||||| ||| | || ||||| ||||| |||||    
T  4415745 atctggcataatcaggtgccgttgaaggtttctttatttgcttggaggttgcttcgtgatagattgcctactaa 4415818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 7945 - 7862
Alignment:
Q  181 gggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctgacaggtggc 264  Q
    |||||||||||||||| ||| |||||||||||| ||  ||| |||||| ||| |||||||||||||||||||||||||||||||    
T  7945 gggtgtgggaggaggagttggtagaggagtgtaggcaattacttaatgttgttgttttgcagtctgatatttctgacaggtggc 7862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 34472 - 34555
Alignment:
Q  181 gggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttttgcagtctgatatttctgacaggtggc 264  Q
    |||||||||||||||| ||| |||||||||||| ||  ||| |||||||||| ||||| |||||||||||||||||||||||||    
T  34472 gggtgtgggaggaggagttggtagaggagtgtaggcaattacttaatggtgttgttttacagtctgatatttctgacaggtggc 34555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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