View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6971_low_12 (Length: 295)
Name: NF6971_low_12
Description: NF6971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6971_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 280
Target Start/End: Complemental strand, 22271111 - 22270850
Alignment:
| Q |
19 |
agacaattaacttactaccttgttactttgcacgatttgatgcacttgccaattttactaaaatcactatcactccacttagtagaaatcacaacaccac |
118 |
Q |
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| T |
22271111 |
agacgattaacttactaccttattactttgcacgatttgatgcacttgccaatttcactaaaatcattatcactccccttagtagaaatcataacaccac |
22271012 |
T |
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| Q |
119 |
cgttcttcctccaactcctaaaggggaggttactctagttcaagggaatcaagagattcctcaagcttcaacaatcctccataattccaaccgtctttcg |
218 |
Q |
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| T |
22271011 |
cgttcttcctccaactcctaaaggggaggttactctagttcaagggaatcaagagattcctcaagcttcaacaatcctccataattccaaccgcctttcg |
22270912 |
T |
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| Q |
219 |
tccatcagaacgagcaagaccaaaatcaccaagtgcgattttttcaactctcagtagcacag |
280 |
Q |
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| T |
22270911 |
ttaatcagaacgagcaagaccaaaatcaccaagtgcgattctttcaactctcagtagcacag |
22270850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 18494626 - 18494564
Alignment:
| Q |
12 |
cctgtggaga-caattaacttactaccttgttactttgcacgatttgatgcacttgccaattt |
73 |
Q |
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| T |
18494626 |
cctgtggagaacaataaacttactaccttattacttgttacgatttggtgcacttgccaattt |
18494564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 14921207 - 14921131
Alignment:
| Q |
12 |
cctgtggagacaattaacttactaccttgttactttgcacgatttgatgcacttgccaattttactaaaatcactat |
88 |
Q |
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| T |
14921207 |
cctgaggagacgattaactcattactttattattttgtacgatttgatgcacttaccaatttatctaaaatcactat |
14921131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 92
Target Start/End: Original strand, 22512011 - 22512053
Alignment:
| Q |
50 |
acgatttgatgcacttgccaattttactaaaatcactatcact |
92 |
Q |
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| T |
22512011 |
acgatttggtgcacttgccaatttcactaaaatcaccatcact |
22512053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 33083662 - 33083616
Alignment:
| Q |
24 |
attaacttactaccttgttactttgcacgatttgatgcacttgccaa |
70 |
Q |
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| T |
33083662 |
attaacttactactctattactttgtacgatttgatgcacttgccaa |
33083616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 6177894 - 6177955
Alignment:
| Q |
12 |
cctgtggagacaattaacttactaccttgttactttgcacgatttgatgcacttgccaattt |
73 |
Q |
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| T |
6177894 |
cctgtgaagacaaaaaacttactactttgttacttgttacgatttgatgcacttgtcaattt |
6177955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 19602967 - 19603023
Alignment:
| Q |
12 |
cctgtggagacaattaacttactaccttgttactttgcacgatttgatgcacttgcc |
68 |
Q |
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| T |
19602967 |
cctgtggagacgattaacttactgctttattacttggtactatttgatgcacttgcc |
19603023 |
T |
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