View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6971_low_13 (Length: 284)
Name: NF6971_low_13
Description: NF6971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6971_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 90 - 276
Target Start/End: Complemental strand, 2159479 - 2159293
Alignment:
| Q |
90 |
atcattttgatcgtttggagcatgattattgcatcactttatcattgctaattggtaagtgatctctagtgaagatatagtattcaaaaggaattaagaa |
189 |
Q |
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| T |
2159479 |
atcattttgatcgtttggagcatgattattgcatcactttatcattgctaattggtaagtcatctctagtgaagatatagtattcaaaaggaattaagaa |
2159380 |
T |
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| Q |
190 |
accatagcagttatttgggtcatattcctattttacactatgaaatgcatggtgtacaataagcattcataattttgttttcttctc |
276 |
Q |
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| T |
2159379 |
accatagcaattatttgggtcatattcctattttacactatgaaatgcatggtgtacaataagcattcataattttgttttcttctc |
2159293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 2159594 - 2159515
Alignment:
| Q |
18 |
ataaaccaccctaaaatctaaaaacagcagcatctttggaatcttattcatacttctgaaaacaagtgcaatatcatttt |
97 |
Q |
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| T |
2159594 |
ataaaccaccctaaaatctaaaaacagcagcatctttggaatcttattcatacttctgaaaacaagtgcaatatcatttt |
2159515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 2162114 - 2162058
Alignment:
| Q |
40 |
aacagcagcatctttggaatcttattcatacttctgaaaacaagtgcaatatcattt |
96 |
Q |
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| T |
2162114 |
aacagcagcatctttgggatcttattcatacttcttctatcaagtgcaatatcattt |
2162058 |
T |
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