View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6971_low_19 (Length: 254)
Name: NF6971_low_19
Description: NF6971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6971_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 23 - 235
Target Start/End: Complemental strand, 4847186 - 4846972
Alignment:
| Q |
23 |
atctcgaataatatttattaggtaattgatattttgtccataagtcattggtcaacaatgatcatgcataatagatttagtaattcaagctaatatggat |
122 |
Q |
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| T |
4847186 |
atctccaacaatatttattaggtaattgatattttgtccatatgtcattggtcaacaatgatcatgcataatagatttagtacttcaaactaatatgcat |
4847087 |
T |
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| Q |
123 |
tttaaatcttaacctcataaagagcattctttt--atcaactaaactattataacattaaaagaggtacaatgatcatatgctttcttttcgaacacaaa |
220 |
Q |
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| T |
4847086 |
tttaaaacttaacctcaaaaagagcattttttttcatcaactaaactattataacattaacagaggtacaatgatcatatgctttctttttaaagacaaa |
4846987 |
T |
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| Q |
221 |
ttgtttagaatttca |
235 |
Q |
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| T |
4846986 |
ttgtttcgaatttca |
4846972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 23 - 244
Target Start/End: Complemental strand, 4801881 - 4801655
Alignment:
| Q |
23 |
atctcgaataatatttattaggtaattgatattttgtccataagtcattggtcaacaatgatcatgcataatagatttagtaattcaagctaatatggat |
122 |
Q |
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| T |
4801881 |
atctccaacaatatttattaggtaattgatattttgtccataagtcattggtcaacaatgatcatgcataatagatttaataattcaaggtaatatgcat |
4801782 |
T |
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| Q |
123 |
tttaaatcttaacctc-----ataaagagcattctttt-atcaactaaactattataacattaaaagaggtacaatgatcatatgctttcttttcgaaca |
216 |
Q |
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|||||||||||| ||| || |||| |||| |||| ||||| ||||||||||||||||||| |||||||||||||||||||||||| |||| || | |
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| T |
4801781 |
tttaaatcttaaactccaagaatgaagatcatttttttcatcaaataaactattataacattaacagaggtacaatgatcatatgcttt-tttttaaaga |
4801683 |
T |
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| Q |
217 |
caaattgtttagaatttcatttgatgtc |
244 |
Q |
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| T |
4801682 |
caaattgtttagaatttcaactgatgtc |
4801655 |
T |
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