View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6971_low_22 (Length: 242)
Name: NF6971_low_22
Description: NF6971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6971_low_22 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 9750523 - 9750701
Alignment:
| Q |
1 |
cctgtaatttgcttcacctttccatcatccaccaactttgttatccctatgctaagagcttcttctgccaaacaacgaaaaagggatccaaggggtctct |
100 |
Q |
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| T |
9750523 |
cctgtaatttgcttcacctttccatcatccaccaactttgttatccctatgctaagagcttcttctgccaaacaaagaaaaagggatccaaggggtctct |
9750622 |
T |
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| Q |
101 |
cttcctgataccccttgaacaagaaaaatatccttgttgtactccatttagggttattgataaagtagatgaagataag |
179 |
Q |
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| T |
9750623 |
ctgcctgataccccttgaacaagaaaaatatccttgttgtactccatttagggttattgataaagtagatgaagataag |
9750701 |
T |
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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 9750816 - 9750864
Alignment:
| Q |
177 |
aagctttggtaatgtcaattttcagagctatgttccctgcataagtctt |
225 |
Q |
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| T |
9750816 |
aagctttggtaatgacaattttcagaactatgttccctgcataagtctt |
9750864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 138783 - 138823
Alignment:
| Q |
179 |
gctttggtaatgtcaattttcagagctatgttccctgcata |
219 |
Q |
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| T |
138783 |
gctttggtaatatcaattttcaaagcaatgttccctgcata |
138823 |
T |
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