View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6971_low_23 (Length: 240)
Name: NF6971_low_23
Description: NF6971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6971_low_23 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 5 - 225
Target Start/End: Complemental strand, 37700966 - 37700746
Alignment:
| Q |
5 |
gtttggtggttcagttcggttctcggttctttttgctcactcctaagtattgattgtggaaatcctcaataataaagcaagtggttccctcttcaaagtt |
104 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
37700966 |
gtttggcggttcagttcggttctcggttctttttgctcactcctaagtattgattgtggaaatcctcaataataaagcaagtggttccctcttcaaaatt |
37700867 |
T |
|
| Q |
105 |
tctgctggggtaccatcgtcttcaaggttgtcatctttaataagtgtcaatattcttttcactttgtcttcaatttccattttagctccatggaactgct |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37700866 |
tctgctggggtaccatcgtcttcaaggttgtcatctttaataagtttcaatattcttttcactttgtcttcaatttccattttagctccatggaactgct |
37700767 |
T |
|
| Q |
205 |
cttctttatcagggtcaatgt |
225 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
37700766 |
cttctttatcagggtcaatgt |
37700746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 51 - 181
Target Start/End: Complemental strand, 41795880 - 41795749
Alignment:
| Q |
51 |
gtattgattgtggaaatcctcaat-aataaagcaagtggttccctcttcaaagtttctgctggggtaccatcgtcttcaaggttgtcatctttaataagt |
149 |
Q |
| |
|
|||||||||||||| ||||||||| ||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
41795880 |
gtattgattgtggatatcctcaatcaattcagcaagtggttccctcttcaaaagttctgctggggtaccatcttcttcaaggttgtcatctttaataagt |
41795781 |
T |
|
| Q |
150 |
gtcaatattcttttcactttgtcttcaatttc |
181 |
Q |
| |
|
||||||| ||||| ||||||||||||||||| |
|
|
| T |
41795780 |
ttcaatatccttttgactttgtcttcaatttc |
41795749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 181
Target Start/End: Complemental strand, 41810473 - 41810396
Alignment:
| Q |
104 |
ttctgctggggtaccatcgtcttcaaggttgtcatctttaataagtgtcaatattcttttcactttgtcttcaatttc |
181 |
Q |
| |
|
||||||| ||||||||| || |||| |||||||||||||||||| |||| || ||||| ||||||||||||||||| |
|
|
| T |
41810473 |
ttctgctcgggtaccattttcgccaagtttgtcatctttaataagtttcaaaatcctttttactttgtcttcaatttc |
41810396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 37701090 - 37701048
Alignment:
| Q |
60 |
gtggaaatcctcaat-aataaagcaagtggttccctcttcaaa |
101 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37701090 |
gtggaaatcctcaatgaataaagcaagtggttccctcttcaaa |
37701048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 41795599 - 41795558
Alignment:
| Q |
184 |
ttttagctccatggaactgctcttctttatcagggtcaatgt |
225 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
41795599 |
ttttagctccctggagctgctcttctttatcagggtcaatgt |
41795558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 149
Target Start/End: Complemental strand, 41803810 - 41803741
Alignment:
| Q |
80 |
agcaagtggttccctcttcaaagtttctgctggggtaccatcgtcttcaaggttgtcatctttaataagt |
149 |
Q |
| |
|
||||| |||||||||||||||| ||||||| || ||||||| || ||||| ||||||| |||||||||| |
|
|
| T |
41803810 |
agcaaatggttccctcttcaaaagttctgctcggataccatcctcgtcaagtttgtcatatttaataagt |
41803741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 181
Target Start/End: Complemental strand, 41803497 - 41803420
Alignment:
| Q |
104 |
ttctgctggggtaccatcgtcttcaaggttgtcatctttaataagtgtcaatattcttttcactttgtcttcaatttc |
181 |
Q |
| |
|
||||||| | |||||||| || |||| |||||||||||||||||| || | || ||||| ||||||||| ||||||| |
|
|
| T |
41803497 |
ttctgctcgagtaccatcttcgccaagtttgtcatctttaataagtttccaaatcctttttactttgtctccaatttc |
41803420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University